RNA–Protein interactions for RNA: ENST00000537304.5

LMO3-215, Transcript of LIM domain only 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO3, Length 1,685 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-215ENST00000537304 NISCHQ9Y2I1 1504 aa21.1■□□□□ 0.97
LMO3-215ENST00000537304 CCDC180Q9P1Z9 1646 aa18.33■□□□□ 0.52
LMO3-215ENST00000537304 HRCP23327 699 aa18.15■□□□□ 0.5
LMO3-215ENST00000537304 PELP1Q8IZL8 1130 aaKnown RBP17.81■□□□□ 0.44
LMO3-215ENST00000537304 SHROOM4Q9ULL8 1493 aa17.75■□□□□ 0.43
LMO3-215ENST00000537304 ZCCHC6Q5VYS8 1495 aaKnown RBP17.75■□□□□ 0.43
LMO3-215ENST00000537304 SUPT5HO00267 1087 aaKnown RBP17.74■□□□□ 0.43
LMO3-215ENST00000537304 DCAF1Q9Y4B6 1507 aa17.65■□□□□ 0.42
LMO3-215ENST00000537304 CHIC1Q5VXU3 224 aa17.61■□□□□ 0.41
LMO3-215ENST00000537304 MYO15BQ96JP2 1530 aa17.6■□□□□ 0.41
LMO3-215ENST00000537304 PCGF6Q9BYE7 350 aa17.58■□□□□ 0.41
LMO3-215ENST00000537304 ZEB1P37275 1124 aaPredicted RBP17.41■□□□□ 0.38
LMO3-215ENST00000537304 PPARGC1BQ86YN6 1023 aaKnown RBP17.36■□□□□ 0.37
LMO3-215ENST00000537304 TRIM26Q12899 539 aaPredicted RBP17.33■□□□□ 0.37
LMO3-215ENST00000537304 DCAF8L2P0C7V8 631 aa17.32■□□□□ 0.36
LMO3-215ENST00000537304 MYT1Q01538 1121 aa17.27■□□□□ 0.36
LMO3-215ENST00000537304 ABCC9O60706 1549 aa17.17■□□□□ 0.34
LMO3-215ENST00000537304 NACADO15069 1562 aa17.03■□□□□ 0.32
LMO3-215ENST00000537304 LOC105371045A0A1W2PR82 267 aa16.96■□□□□ 0.31
LMO3-215ENST00000537304 SCAF1Q9H7N4 1312 aaKnown RBP16.95■□□□□ 0.3
LMO3-215ENST00000537304 SCRIBQ14160 1630 aa16.85■□□□□ 0.29
LMO3-215ENST00000537304 RB1CC1Q8TDY2 1594 aa16.84■□□□□ 0.29
LMO3-215ENST00000537304 ACIN1Q9UKV3 1341 aaKnown RBP16.74■□□□□ 0.27
LMO3-215ENST00000537304 CENPBP07199 599 aaPredicted RBP16.73■□□□□ 0.27
LMO3-215ENST00000537304 TRIM41Q8WV44 630 aa16.62■□□□□ 0.25
LMO3-215ENST00000537304 RSF1Q96T23 1441 aaPredicted RBP16.53■□□□□ 0.24
LMO3-215ENST00000537304 UNC13AQ9UPW8 1703 aa16.51■□□□□ 0.23
LMO3-215ENST00000537304 NEUROD1Q13562 356 aa16.51■□□□□ 0.23
LMO3-215ENST00000537304 GTF3C3Q9Y5Q9 886 aa16.46■□□□□ 0.23
LMO3-215ENST00000537304 DIEXFQ68CQ4 756 aaKnown RBP16.46■□□□□ 0.23
LMO3-215ENST00000537304 CCER1Q8TC90 406 aaPredicted RBP16.46■□□□□ 0.23
LMO3-215ENST00000537304 CECR2Q9BXF3 1484 aa16.37■□□□□ 0.21
LMO3-215ENST00000537304 BICRAQ9NZM4 1560 aa16.35■□□□□ 0.21
LMO3-215ENST00000537304 FAM9AQ8IZU1 332 aaPredicted RBP16.31■□□□□ 0.2
LMO3-215ENST00000537304 WRNQ14191 1432 aaPredicted RBP eCLIP16.3■□□□□ 0.2
LMO3-215ENST00000537304 MROH2BQ7Z745 1585 aa16.3■□□□□ 0.2
LMO3-215ENST00000537304 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.29■□□□□ 0.2
LMO3-215ENST00000537304 BAZ1AQ9NRL2 1556 aaPredicted RBP16.27■□□□□ 0.19
LMO3-215ENST00000537304 CLSPNQ9HAW4 1339 aa16.26■□□□□ 0.19
LMO3-215ENST00000537304 ZNF316A6NFI3 1004 aaPredicted RBP16.24■□□□□ 0.19
LMO3-215ENST00000537304 TTBK1Q5TCY1 1321 aaPredicted RBP16.23■□□□□ 0.19
LMO3-215ENST00000537304 PABPN1Q86U42 306 aaKnown RBP eCLIP16.22■□□□□ 0.19
LMO3-215ENST00000537304 SMARCA4P51532 1647 aa16.18■□□□□ 0.18
LMO3-215ENST00000537304 WIZO95785 1651 aa16.17■□□□□ 0.18
LMO3-215ENST00000537304 AEBP2Q6ZN18 517 aaPredicted RBP16.14■□□□□ 0.18
LMO3-215ENST00000537304 EEA1Q15075 1411 aa16.08■□□□□ 0.16
LMO3-215ENST00000537304 EIF4G1Q04637 1599 aaKnown RBP16.08■□□□□ 0.16
LMO3-215ENST00000537304 TNIKQ9UKE5 1360 aa16.05■□□□□ 0.16
LMO3-215ENST00000537304 CEP162Q5TB80 1403 aa16.04■□□□□ 0.16
LMO3-215ENST00000537304 TOP2AP11388 1531 aaKnown RBP16.01■□□□□ 0.15
LMO3-215ENST00000537304 EHMT2Q96KQ7 1210 aa16■□□□□ 0.15
LMO3-215ENST00000537304 PEG3Q9GZU2 1588 aa15.99■□□□□ 0.15
LMO3-215ENST00000537304 YTHDC1Q96MU7 727 aaKnown RBP15.94■□□□□ 0.14
LMO3-215ENST00000537304 MIER1Q8N108 512 aa15.92■□□□□ 0.14
LMO3-215ENST00000537304 GOLGA3Q08378 1498 aa15.88■□□□□ 0.13
LMO3-215ENST00000537304 ATAD2BQ9ULI0 1458 aa15.88■□□□□ 0.13
LMO3-215ENST00000537304 SMARCA2P51531 1590 aa15.87■□□□□ 0.13
LMO3-215ENST00000537304 CCDC88BA6NC98 1476 aa15.85■□□□□ 0.13
LMO3-215ENST00000537304 CSRNP3Q8WYN3 585 aa15.79■□□□□ 0.12
LMO3-215ENST00000537304 ANP32EQ9BTT0 268 aa15.79■□□□□ 0.12
LMO3-215ENST00000537304 BAZ1BQ9UIG0 1483 aaKnown RBP15.79■□□□□ 0.12
LMO3-215ENST00000537304 SUPT16HQ9Y5B9 1047 aaKnown RBP15.76■□□□□ 0.11
LMO3-215ENST00000537304 ABCC8Q09428 1581 aa15.74■□□□□ 0.11
LMO3-215ENST00000537304 KIF21BO75037 1637 aa15.74■□□□□ 0.11
LMO3-215ENST00000537304 CEP164Q9UPV0 1460 aa15.74■□□□□ 0.11
LMO3-215ENST00000537304 UBTFP17480 764 aaKnown RBP15.73■□□□□ 0.11
LMO3-215ENST00000537304 NCAPD3P42695 1498 aa15.73■□□□□ 0.11
LMO3-215ENST00000537304 SOGA1O94964 1423 aa15.71■□□□□ 0.11
LMO3-215ENST00000537304 HMGXB3Q12766 1538 aa15.71■□□□□ 0.1
LMO3-215ENST00000537304 VPS8Q8N3P4 1428 aa15.69■□□□□ 0.1
LMO3-215ENST00000537304 APLP2Q06481 763 aa15.68■□□□□ 0.1
LMO3-215ENST00000537304 TSHZ2Q9NRE2 1034 aa15.66■□□□□ 0.1
LMO3-215ENST00000537304 CLIP1P30622 1438 aa15.64■□□□□ 0.09
LMO3-215ENST00000537304 HNRNPUL2Q1KMD3 747 aaKnown RBP15.64■□□□□ 0.09
LMO3-215ENST00000537304 BCL11AQ9H165 835 aa15.59■□□□□ 0.09
LMO3-215ENST00000537304 CC2D2AQ9P2K1 1620 aa15.55■□□□□ 0.08
LMO3-215ENST00000537304 DHX57Q6P158 1386 aaKnown RBP15.54■□□□□ 0.08
LMO3-215ENST00000537304 RUSC2Q8N2Y8 1516 aa15.54■□□□□ 0.08
LMO3-215ENST00000537304 CUX2O14529 1486 aa15.5■□□□□ 0.07
LMO3-215ENST00000537304 NEFLP07196 543 aa15.45■□□□□ 0.06
LMO3-215ENST00000537304 RRBP1Q9P2E9 1410 aaKnown RBP15.42■□□□□ 0.06
LMO3-215ENST00000537304 MYT1LQ9UL68 1186 aa15.41■□□□□ 0.06
LMO3-215ENST00000537304 ERICH3Q5RHP9 1530 aa15.41■□□□□ 0.06
LMO3-215ENST00000537304 CFTRP13569 1480 aa15.41■□□□□ 0.06
LMO3-215ENST00000537304 SYNJ1O43426 1573 aa15.39■□□□□ 0.05
LMO3-215ENST00000537304 RAPGEF2Q9Y4G8 1499 aa15.36■□□□□ 0.05
LMO3-215ENST00000537304 PRDM2Q13029 1718 aa15.34■□□□□ 0.05
LMO3-215ENST00000537304 CADPSQ9ULU8 1353 aa15.32■□□□□ 0.04
LMO3-215ENST00000537304 FKBP8Q14318 412 aa15.32■□□□□ 0.04
LMO3-215ENST00000537304 TIMELESSQ9UNS1 1208 aa15.32■□□□□ 0.04
LMO3-215ENST00000537304 CCER2I3L3R5 266 aa15.32■□□□□ 0.04
LMO3-215ENST00000537304 RBM19Q9Y4C8 960 aaKnown RBP15.31■□□□□ 0.04
LMO3-215ENST00000537304 TOP2BQ02880 1626 aa15.31■□□□□ 0.04
LMO3-215ENST00000537304 BIVM-ERCC5R4GMW8 1640 aa15.3■□□□□ 0.04
LMO3-215ENST00000537304 CCNB3Q8WWL7 1395 aa15.29■□□□□ 0.04
LMO3-215ENST00000537304 ARAP1Q96P48 1450 aa15.28■□□□□ 0.04
LMO3-215ENST00000537304 FANCIQ9NVI1 1328 aa15.27■□□□□ 0.04
LMO3-215ENST00000537304 PRXQ9BXM0 1461 aa15.25■□□□□ 0.03
LMO3-215ENST00000537304 MAP3K1Q13233 1512 aa15.24■□□□□ 0.03
LMO3-215ENST00000537304 CUX1P39880 1505 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms