RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 NISCHQ9Y2I1 1504 aa23.87■■□□□ 1.41
SYNE1-234ENST00000536990 CCDC180Q9P1Z9 1646 aa20.35■□□□□ 0.85
SYNE1-234ENST00000536990 SHROOM4Q9ULL8 1493 aa20.25■□□□□ 0.83
SYNE1-234ENST00000536990 ZCCHC6Q5VYS8 1495 aaKnown RBP20.18■□□□□ 0.82
SYNE1-234ENST00000536990 SUPT5HO00267 1087 aaKnown RBP19.86■□□□□ 0.77
SYNE1-234ENST00000536990 DCAF8L2P0C7V8 631 aa19.79■□□□□ 0.76
SYNE1-234ENST00000536990 DCAF1Q9Y4B6 1507 aa19.62■□□□□ 0.73
SYNE1-234ENST00000536990 MYO15BQ96JP2 1530 aa19.42■□□□□ 0.7
SYNE1-234ENST00000536990 CHIC1Q5VXU3 224 aa19.42■□□□□ 0.7
SYNE1-234ENST00000536990 HRCP23327 699 aa19.15■□□□□ 0.66
SYNE1-234ENST00000536990 ABCC9O60706 1549 aa19.02■□□□□ 0.64
SYNE1-234ENST00000536990 SCRIBQ14160 1630 aa19.02■□□□□ 0.63
SYNE1-234ENST00000536990 PCGF6Q9BYE7 350 aa18.96■□□□□ 0.63
SYNE1-234ENST00000536990 RSF1Q96T23 1441 aaPredicted RBP18.86■□□□□ 0.61
SYNE1-234ENST00000536990 NACADO15069 1562 aa18.83■□□□□ 0.61
SYNE1-234ENST00000536990 LOC105371045A0A1W2PR82 267 aa18.82■□□□□ 0.6
SYNE1-234ENST00000536990 PPARGC1BQ86YN6 1023 aaKnown RBP18.69■□□□□ 0.58
SYNE1-234ENST00000536990 RB1CC1Q8TDY2 1594 aa18.66■□□□□ 0.58
SYNE1-234ENST00000536990 CECR2Q9BXF3 1484 aa18.59■□□□□ 0.57
SYNE1-234ENST00000536990 TRIM26Q12899 539 aaPredicted RBP18.59■□□□□ 0.57
SYNE1-234ENST00000536990 TRIM41Q8WV44 630 aa18.54■□□□□ 0.56
SYNE1-234ENST00000536990 MROH2BQ7Z745 1585 aa18.53■□□□□ 0.56
SYNE1-234ENST00000536990 WIZO95785 1651 aa18.44■□□□□ 0.54
SYNE1-234ENST00000536990 BAZ1AQ9NRL2 1556 aaPredicted RBP18.36■□□□□ 0.53
SYNE1-234ENST00000536990 FAM9AQ8IZU1 332 aaPredicted RBP18.34■□□□□ 0.53
SYNE1-234ENST00000536990 ZEB1P37275 1124 aaPredicted RBP18.27■□□□□ 0.51
SYNE1-234ENST00000536990 UNC13AQ9UPW8 1703 aa18.23■□□□□ 0.51
SYNE1-234ENST00000536990 SMARCA4P51532 1647 aa18.19■□□□□ 0.5
SYNE1-234ENST00000536990 TOP2AP11388 1531 aaKnown RBP18.17■□□□□ 0.5
SYNE1-234ENST00000536990 EIF4G1Q04637 1599 aaKnown RBP18.16■□□□□ 0.5
SYNE1-234ENST00000536990 EHMT2Q96KQ7 1210 aa18.15■□□□□ 0.5
SYNE1-234ENST00000536990 CCDC88BA6NC98 1476 aa18.08■□□□□ 0.48
SYNE1-234ENST00000536990 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
SYNE1-234ENST00000536990 PABPN1Q86U42 306 aaKnown RBP eCLIP18■□□□□ 0.47
SYNE1-234ENST00000536990 BICRAQ9NZM4 1560 aa17.99■□□□□ 0.47
SYNE1-234ENST00000536990 ABCC8Q09428 1581 aa17.99■□□□□ 0.47
SYNE1-234ENST00000536990 PEG3Q9GZU2 1588 aa17.86■□□□□ 0.45
SYNE1-234ENST00000536990 SOGA1O94964 1423 aa17.82■□□□□ 0.44
SYNE1-234ENST00000536990 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.44
SYNE1-234ENST00000536990 EEA1Q15075 1411 aa17.79■□□□□ 0.44
SYNE1-234ENST00000536990 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.78■□□□□ 0.44
SYNE1-234ENST00000536990 SCAF1Q9H7N4 1312 aaKnown RBP17.76■□□□□ 0.43
SYNE1-234ENST00000536990 CSRNP3Q8WYN3 585 aa17.75■□□□□ 0.43
SYNE1-234ENST00000536990 CCER1Q8TC90 406 aaPredicted RBP17.74■□□□□ 0.43
SYNE1-234ENST00000536990 CEP162Q5TB80 1403 aa17.74■□□□□ 0.43
SYNE1-234ENST00000536990 ATAD2BQ9ULI0 1458 aa17.74■□□□□ 0.43
SYNE1-234ENST00000536990 TNIKQ9UKE5 1360 aa17.73■□□□□ 0.43
SYNE1-234ENST00000536990 RUSC2Q8N2Y8 1516 aa17.71■□□□□ 0.43
SYNE1-234ENST00000536990 BAZ1BQ9UIG0 1483 aaKnown RBP17.7■□□□□ 0.42
SYNE1-234ENST00000536990 UBTFP17480 764 aaKnown RBP17.67■□□□□ 0.42
SYNE1-234ENST00000536990 GOLGA3Q08378 1498 aa17.64■□□□□ 0.41
SYNE1-234ENST00000536990 SYNJ1O43426 1573 aa17.62■□□□□ 0.41
SYNE1-234ENST00000536990 PELP1Q8IZL8 1130 aaKnown RBP17.61■□□□□ 0.41
SYNE1-234ENST00000536990 TTBK1Q5TCY1 1321 aaPredicted RBP17.56■□□□□ 0.4
SYNE1-234ENST00000536990 CEP164Q9UPV0 1460 aa17.55■□□□□ 0.4
SYNE1-234ENST00000536990 ACIN1Q9UKV3 1341 aaKnown RBP17.53■□□□□ 0.4
SYNE1-234ENST00000536990 KIF21BO75037 1637 aa17.52■□□□□ 0.39
SYNE1-234ENST00000536990 DIEXFQ68CQ4 756 aaKnown RBP17.52■□□□□ 0.39
SYNE1-234ENST00000536990 NEUROD1Q13562 356 aa17.48■□□□□ 0.39
SYNE1-234ENST00000536990 TOP2BQ02880 1626 aa17.44■□□□□ 0.38
SYNE1-234ENST00000536990 CLIP1P30622 1438 aa17.42■□□□□ 0.38
SYNE1-234ENST00000536990 NCAPD3P42695 1498 aa17.42■□□□□ 0.38
SYNE1-234ENST00000536990 HMGXB3Q12766 1538 aa17.41■□□□□ 0.38
SYNE1-234ENST00000536990 RAPGEF2Q9Y4G8 1499 aa17.39■□□□□ 0.37
SYNE1-234ENST00000536990 BIVM-ERCC5R4GMW8 1640 aa17.38■□□□□ 0.37
SYNE1-234ENST00000536990 CENPBP07199 599 aaPredicted RBP17.36■□□□□ 0.37
SYNE1-234ENST00000536990 ZNF316A6NFI3 1004 aaPredicted RBP17.35■□□□□ 0.37
SYNE1-234ENST00000536990 VPS8Q8N3P4 1428 aa17.34■□□□□ 0.37
SYNE1-234ENST00000536990 APLP2Q06481 763 aa17.3■□□□□ 0.36
SYNE1-234ENST00000536990 GTF3C3Q9Y5Q9 886 aa17.3■□□□□ 0.36
SYNE1-234ENST00000536990 RANGAP1P46060 587 aaPredicted RBP17.28■□□□□ 0.36
SYNE1-234ENST00000536990 CUX1P39880 1505 aa17.26■□□□□ 0.35
SYNE1-234ENST00000536990 HNRNPUL2Q1KMD3 747 aaKnown RBP17.26■□□□□ 0.35
SYNE1-234ENST00000536990 ERICH3Q5RHP9 1530 aa17.26■□□□□ 0.35
SYNE1-234ENST00000536990 CFTRP13569 1480 aa17.25■□□□□ 0.35
SYNE1-234ENST00000536990 PRXQ9BXM0 1461 aa17.25■□□□□ 0.35
SYNE1-234ENST00000536990 KIF27Q86VH2 1401 aa17.2■□□□□ 0.34
SYNE1-234ENST00000536990 PRDM2Q13029 1718 aa17.14■□□□□ 0.33
SYNE1-234ENST00000536990 MIER1Q8N108 512 aa17.13■□□□□ 0.33
SYNE1-234ENST00000536990 ARAP1Q96P48 1450 aa17.13■□□□□ 0.33
SYNE1-234ENST00000536990 CADPSQ9ULU8 1353 aa17.08■□□□□ 0.32
SYNE1-234ENST00000536990 YTHDC1Q96MU7 727 aaKnown RBP17.07■□□□□ 0.32
SYNE1-234ENST00000536990 CLSPNQ9HAW4 1339 aa17.04■□□□□ 0.32
SYNE1-234ENST00000536990 CUX2O14529 1486 aa17.03■□□□□ 0.32
SYNE1-234ENST00000536990 KANK4Q5T7N3 995 aaPredicted RBP17.02■□□□□ 0.32
SYNE1-234ENST00000536990 DHX57Q6P158 1386 aaKnown RBP17.02■□□□□ 0.32
SYNE1-234ENST00000536990 IGF1RP08069 1367 aa17■□□□□ 0.31
SYNE1-234ENST00000536990 ARHGAP35Q9NRY4 1499 aa17■□□□□ 0.31
SYNE1-234ENST00000536990 CC2D2AQ9P2K1 1620 aa16.99■□□□□ 0.31
SYNE1-234ENST00000536990 FGD5Q6ZNL6 1462 aa16.97■□□□□ 0.31
SYNE1-234ENST00000536990 RRBP1Q9P2E9 1410 aaKnown RBP16.97■□□□□ 0.31
SYNE1-234ENST00000536990 CARMIL1Q5VZK9 1371 aa16.94■□□□□ 0.3
SYNE1-234ENST00000536990 FANCD2Q9BXW9 1451 aa16.91■□□□□ 0.3
SYNE1-234ENST00000536990 CCNB3Q8WWL7 1395 aa16.87■□□□□ 0.29
SYNE1-234ENST00000536990 DNMBPQ6XZF7 1577 aa16.83■□□□□ 0.28
SYNE1-234ENST00000536990 MAP3K1Q13233 1512 aa16.82■□□□□ 0.28
SYNE1-234ENST00000536990 TIAM1Q13009 1591 aa16.81■□□□□ 0.28
SYNE1-234ENST00000536990 RAD54L2Q9Y4B4 1467 aa16.79■□□□□ 0.28
SYNE1-234ENST00000536990 TOPBP1Q92547 1522 aa16.79■□□□□ 0.28
SYNE1-234ENST00000536990 ITGAEP38570 1179 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms