RNA–Protein interactions for RNA: ENST00000534669.1

GEN1-207, Transcript of GEN1, Holliday junction 5' flap endonuclease, humanhuman

TSL 2

Gene GEN1, Length 435 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GEN1-207ENST00000534669 AEBP2Q6ZN18 517 aaPredicted RBP21.31■■□□□ 1
GEN1-207ENST00000534669 CHIC1Q5VXU3 224 aa20.51■□□□□ 0.87
GEN1-207ENST00000534669 NISCHQ9Y2I1 1504 aa18.27■□□□□ 0.51
GEN1-207ENST00000534669 SENP3Q9H4L4 574 aaPredicted RBP18.22■□□□□ 0.51
GEN1-207ENST00000534669 PHF23Q9BUL5 403 aaPredicted RBP17.96■□□□□ 0.47
GEN1-207ENST00000534669 FOXD1Q16676 465 aa16.89■□□□□ 0.29
GEN1-207ENST00000534669 ABCC9O60706 1549 aa16.64■□□□□ 0.25
GEN1-207ENST00000534669 PLPPR3Q6T4P5 718 aa16.52■□□□□ 0.24
GEN1-207ENST00000534669 CCDC180Q9P1Z9 1646 aa16.46■□□□□ 0.23
GEN1-207ENST00000534669 PPP6R1Q9UPN7 881 aa15.95■□□□□ 0.14
GEN1-207ENST00000534669 ADRA2BP18089 450 aa15.91■□□□□ 0.14
GEN1-207ENST00000534669 PIAS4Q8N2W9 510 aaPredicted RBP15.85■□□□□ 0.13
GEN1-207ENST00000534669 DNAJC5BQ9UF47 199 aa15.79■□□□□ 0.12
GEN1-207ENST00000534669 MSH5O43196 834 aa15.78■□□□□ 0.12
GEN1-207ENST00000534669 RB1CC1Q8TDY2 1594 aa15.7■□□□□ 0.1
GEN1-207ENST00000534669 NACADO15069 1562 aa15.56■□□□□ 0.08
GEN1-207ENST00000534669 UNC13AQ9UPW8 1703 aa15.5■□□□□ 0.07
GEN1-207ENST00000534669 PABPN1Q86U42 306 aaKnown RBP eCLIP15.45■□□□□ 0.06
GEN1-207ENST00000534669 DCAF8L2P0C7V8 631 aa15.42■□□□□ 0.06
GEN1-207ENST00000534669 BICRAQ9NZM4 1560 aa15.36■□□□□ 0.05
GEN1-207ENST00000534669 MYO15BQ96JP2 1530 aa15.27■□□□□ 0.03
GEN1-207ENST00000534669 ZCCHC6Q5VYS8 1495 aaKnown RBP15.12■□□□□ 0.01
GEN1-207ENST00000534669 DCAF1Q9Y4B6 1507 aa15.04■□□□□ -0
GEN1-207ENST00000534669 SCRIBQ14160 1630 aa15.03■□□□□ -0
GEN1-207ENST00000534669 CC2D2AQ9P2K1 1620 aa15.03■□□□□ -0
GEN1-207ENST00000534669 SHROOM4Q9ULL8 1493 aa14.99□□□□□ -0.01
GEN1-207ENST00000534669 CECR2Q9BXF3 1484 aa14.97□□□□□ -0.01
GEN1-207ENST00000534669 EIF4G1Q04637 1599 aaKnown RBP14.94□□□□□ -0.02
GEN1-207ENST00000534669 POTEDQ86YR6 584 aa14.92□□□□□ -0.02
GEN1-207ENST00000534669 SCAF1Q9H7N4 1312 aaKnown RBP14.66□□□□□ -0.06
GEN1-207ENST00000534669 MAPK8IP2Q13387 824 aaPredicted RBP14.52□□□□□ -0.09
GEN1-207ENST00000534669 DNAJC5Q9H3Z4 198 aa14.51□□□□□ -0.09
GEN1-207ENST00000534669 PPP4R3CPQ6ZMV5 832 aa14.48□□□□□ -0.09
GEN1-207ENST00000534669 DMRT2Q9Y5R5 561 aa14.47□□□□□ -0.09
GEN1-207ENST00000534669 NCAPD3P42695 1498 aa14.37□□□□□ -0.11
GEN1-207ENST00000534669 CUX2O14529 1486 aa14.33□□□□□ -0.12
GEN1-207ENST00000534669 ATAD2BQ9ULI0 1458 aa14.33□□□□□ -0.12
GEN1-207ENST00000534669 ERCC6Q03468 1493 aa14.31□□□□□ -0.12
GEN1-207ENST00000534669 SMARCA4P51532 1647 aa14.3□□□□□ -0.12
GEN1-207ENST00000534669 NESP48681 1621 aa14.28□□□□□ -0.12
GEN1-207ENST00000534669 HMGXB3Q12766 1538 aa14.25□□□□□ -0.13
GEN1-207ENST00000534669 SMARCA2P51531 1590 aa14.24□□□□□ -0.13
GEN1-207ENST00000534669 CNKSR2Q8WXI2 1034 aa14.19□□□□□ -0.14
GEN1-207ENST00000534669 THOC2Q8NI27 1593 aaKnown RBP14.17□□□□□ -0.14
GEN1-207ENST00000534669 BAZ1BQ9UIG0 1483 aaKnown RBP14.16□□□□□ -0.14
GEN1-207ENST00000534669 BAZ1AQ9NRL2 1556 aaPredicted RBP14.16□□□□□ -0.14
GEN1-207ENST00000534669 PEG3Q9GZU2 1588 aa14.14□□□□□ -0.15
GEN1-207ENST00000534669 MROH2BQ7Z745 1585 aa14.12□□□□□ -0.15
GEN1-207ENST00000534669 KIF21AQ7Z4S6 1674 aa14.1□□□□□ -0.15
GEN1-207ENST00000534669 LAMC3Q9Y6N6 1575 aa14.07□□□□□ -0.16
GEN1-207ENST00000534669 NCBP3Q53F19 620 aaKnown RBP14.05□□□□□ -0.16
GEN1-207ENST00000534669 HOXD11P31277 338 aaPredicted RBP14.04□□□□□ -0.16
GEN1-207ENST00000534669 RNF216Q9NWF9 866 aaPredicted RBP14.01□□□□□ -0.17
GEN1-207ENST00000534669 WIZO95785 1651 aa13.96□□□□□ -0.17
GEN1-207ENST00000534669 PDS5BQ9NTI5 1447 aa13.95□□□□□ -0.18
GEN1-207ENST00000534669 CADPSQ9ULU8 1353 aa13.91□□□□□ -0.18
GEN1-207ENST00000534669 MRC2Q9UBG0 1479 aa13.9□□□□□ -0.18
GEN1-207ENST00000534669 WDR62O43379 1518 aa13.89□□□□□ -0.19
GEN1-207ENST00000534669 TRIM41Q8WV44 630 aa13.82□□□□□ -0.2
GEN1-207ENST00000534669 CEP164Q9UPV0 1460 aa13.8□□□□□ -0.2
GEN1-207ENST00000534669 DCAF8L1A6NGE4 600 aa13.79□□□□□ -0.2
GEN1-207ENST00000534669 NPM3O75607 178 aaKnown RBP13.79□□□□□ -0.2
GEN1-207ENST00000534669 FANCD2Q9BXW9 1451 aa13.79□□□□□ -0.2
GEN1-207ENST00000534669 CFTRP13569 1480 aa13.74□□□□□ -0.21
GEN1-207ENST00000534669 URB2Q14146 1524 aaKnown RBP13.73□□□□□ -0.21
GEN1-207ENST00000534669 RSF1Q96T23 1441 aaPredicted RBP13.73□□□□□ -0.21
GEN1-207ENST00000534669 KCNA4P22459 653 aa13.72□□□□□ -0.21
GEN1-207ENST00000534669 TOP2AP11388 1531 aaKnown RBP13.72□□□□□ -0.21
GEN1-207ENST00000534669 PRDM2Q13029 1718 aa13.66□□□□□ -0.22
GEN1-207ENST00000534669 OSCARQ8IYS5 282 aa13.61□□□□□ -0.23
GEN1-207ENST00000534669 ZNF608Q9ULD9 1512 aaPredicted RBP13.59□□□□□ -0.23
GEN1-207ENST00000534669 RIMBP3CA6NJZ7 1639 aa13.58□□□□□ -0.24
GEN1-207ENST00000534669 RIMBP3BA6NNM3 1639 aa13.58□□□□□ -0.24
GEN1-207ENST00000534669 RIMBP3Q9UFD9 1639 aa13.58□□□□□ -0.24
GEN1-207ENST00000534669 CCDC88BA6NC98 1476 aa13.57□□□□□ -0.24
GEN1-207ENST00000534669 TOPBP1Q92547 1522 aa13.53□□□□□ -0.24
GEN1-207ENST00000534669 IFT140Q96RY7 1462 aa13.52□□□□□ -0.25
GEN1-207ENST00000534669 EIF4G3O43432 1585 aaKnown RBP13.5□□□□□ -0.25
GEN1-207ENST00000534669 ARHGEF11O15085 1522 aa13.49□□□□□ -0.25
GEN1-207ENST00000534669 RNF39Q9H2S5 420 aa13.46□□□□□ -0.25
GEN1-207ENST00000534669 CHD1O14646 1710 aa13.46□□□□□ -0.25
GEN1-207ENST00000534669 DNMBPQ6XZF7 1577 aa13.45□□□□□ -0.26
GEN1-207ENST00000534669 TARBP1Q13395 1621 aaKnown RBP13.45□□□□□ -0.26
GEN1-207ENST00000534669 AQRO60306 1485 aaKnown RBP eCLIP13.42□□□□□ -0.261e-6■■■■■ 33.8
GEN1-207ENST00000534669 ABCC8Q09428 1581 aa13.39□□□□□ -0.27
GEN1-207ENST00000534669 POLA1P09884 1462 aaPredicted RBP13.38□□□□□ -0.27
GEN1-207ENST00000534669 ARAP1Q96P48 1450 aa13.36□□□□□ -0.27
GEN1-207ENST00000534669 RAD54L2Q9Y4B4 1467 aa13.36□□□□□ -0.27
GEN1-207ENST00000534669 CYB5RLQ6IPT4 315 aa13.35□□□□□ -0.27
GEN1-207ENST00000534669 CACNB1Q02641 598 aaPredicted RBP13.34□□□□□ -0.27
GEN1-207ENST00000534669 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.34□□□□□ -0.27
GEN1-207ENST00000534669 C1QBPQ07021 282 aaKnown RBP13.31□□□□□ -0.28
GEN1-207ENST00000534669 TDRD9Q8NDG6 1382 aaKnown RBP13.3□□□□□ -0.28
GEN1-207ENST00000534669 FBLN2P98095 1184 aa13.29□□□□□ -0.28
GEN1-207ENST00000534669 SNAPC4Q5SXM2 1469 aa13.28□□□□□ -0.28
GEN1-207ENST00000534669 FGD5Q6ZNL6 1462 aa13.28□□□□□ -0.28
GEN1-207ENST00000534669 SOGA1O94964 1423 aa13.27□□□□□ -0.29
GEN1-207ENST00000534669 CUX1P39880 1505 aa13.27□□□□□ -0.29
GEN1-207ENST00000534669 CLASP1Q7Z460 1538 aa13.27□□□□□ -0.29
GEN1-207ENST00000534669 WDR97A6NE52 1622 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms