RNA–Protein interactions for RNA: ENST00000530311.6

TRIM49D1-202, Transcript of tripartite motif containing 49D1, humanhuman

APPRIS P2 TSL 5 BASIC

Gene TRIM49D1, Length 2,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1-202ENST00000530311 NISCHQ9Y2I1 1504 aa18.93■□□□□ 0.62
TRIM49D1-202ENST00000530311 SHROOM4Q9ULL8 1493 aa16.36■□□□□ 0.21
TRIM49D1-202ENST00000530311 CCDC180Q9P1Z9 1646 aa16.18■□□□□ 0.18
TRIM49D1-202ENST00000530311 SUPT5HO00267 1087 aaKnown RBP16.08■□□□□ 0.16
TRIM49D1-202ENST00000530311 ZCCHC6Q5VYS8 1495 aaKnown RBP16.01■□□□□ 0.15
TRIM49D1-202ENST00000530311 DCAF8L2P0C7V8 631 aa15.86■□□□□ 0.13
TRIM49D1-202ENST00000530311 CHIC1Q5VXU3 224 aa15.63■□□□□ 0.09
TRIM49D1-202ENST00000530311 MYO15BQ96JP2 1530 aa15.59■□□□□ 0.09
TRIM49D1-202ENST00000530311 AEBP2Q6ZN18 517 aaPredicted RBP15.53■□□□□ 0.08
TRIM49D1-202ENST00000530311 DCAF1Q9Y4B6 1507 aa15.5■□□□□ 0.07
TRIM49D1-202ENST00000530311 LOC105371045A0A1W2PR82 267 aa15.25■□□□□ 0.03
TRIM49D1-202ENST00000530311 PCGF6Q9BYE7 350 aa15.25■□□□□ 0.03
TRIM49D1-202ENST00000530311 HRCP23327 699 aa15.25■□□□□ 0.03
TRIM49D1-202ENST00000530311 SCRIBQ14160 1630 aa15.12■□□□□ 0.01
TRIM49D1-202ENST00000530311 ABCC9O60706 1549 aa15.1■□□□□ 0.01
TRIM49D1-202ENST00000530311 RSF1Q96T23 1441 aaPredicted RBP15.06■□□□□ 0
TRIM49D1-202ENST00000530311 PPARGC1BQ86YN6 1023 aaKnown RBP15.04■□□□□ -0
TRIM49D1-202ENST00000530311 NACADO15069 1562 aa14.92□□□□□ -0.02
TRIM49D1-202ENST00000530311 TRIM41Q8WV44 630 aa14.91□□□□□ -0.02
TRIM49D1-202ENST00000530311 RB1CC1Q8TDY2 1594 aa14.89□□□□□ -0.03
TRIM49D1-202ENST00000530311 FAM9AQ8IZU1 332 aaPredicted RBP14.88□□□□□ -0.03
TRIM49D1-202ENST00000530311 TRIM26Q12899 539 aaPredicted RBP14.87□□□□□ -0.03
TRIM49D1-202ENST00000530311 CECR2Q9BXF3 1484 aa14.85□□□□□ -0.03
TRIM49D1-202ENST00000530311 EHMT2Q96KQ7 1210 aa14.82□□□□□ -0.04
TRIM49D1-202ENST00000530311 MROH2BQ7Z745 1585 aa14.77□□□□□ -0.05
TRIM49D1-202ENST00000530311 WIZO95785 1651 aa14.69□□□□□ -0.06
TRIM49D1-202ENST00000530311 UNC13AQ9UPW8 1703 aa14.63□□□□□ -0.07
TRIM49D1-202ENST00000530311 BAZ1AQ9NRL2 1556 aaPredicted RBP14.53□□□□□ -0.08
TRIM49D1-202ENST00000530311 ZEB1P37275 1124 aaPredicted RBP14.51□□□□□ -0.09
TRIM49D1-202ENST00000530311 EIF4G1Q04637 1599 aaKnown RBP14.45□□□□□ -0.1
TRIM49D1-202ENST00000530311 SMARCA4P51532 1647 aa14.45□□□□□ -0.1
TRIM49D1-202ENST00000530311 CCDC88BA6NC98 1476 aa14.42□□□□□ -0.1
TRIM49D1-202ENST00000530311 ABCC8Q09428 1581 aa14.41□□□□□ -0.1
TRIM49D1-202ENST00000530311 TOP2AP11388 1531 aaKnown RBP14.39□□□□□ -0.11
TRIM49D1-202ENST00000530311 BICRAQ9NZM4 1560 aa14.39□□□□□ -0.11
TRIM49D1-202ENST00000530311 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.35□□□□□ -0.11
TRIM49D1-202ENST00000530311 SMARCA2P51531 1590 aa14.35□□□□□ -0.11
TRIM49D1-202ENST00000530311 PABPN1Q86U42 306 aaKnown RBP eCLIP14.34□□□□□ -0.11
TRIM49D1-202ENST00000530311 TTBK1Q5TCY1 1321 aaPredicted RBP14.34□□□□□ -0.11
TRIM49D1-202ENST00000530311 SOGA1O94964 1423 aa14.32□□□□□ -0.12
TRIM49D1-202ENST00000530311 RUSC2Q8N2Y8 1516 aa14.27□□□□□ -0.13
TRIM49D1-202ENST00000530311 CCER1Q8TC90 406 aaPredicted RBP14.26□□□□□ -0.13
TRIM49D1-202ENST00000530311 CEP162Q5TB80 1403 aa14.24□□□□□ -0.13
TRIM49D1-202ENST00000530311 CSRNP3Q8WYN3 585 aa14.23□□□□□ -0.13
TRIM49D1-202ENST00000530311 UBTFP17480 764 aaKnown RBP14.21□□□□□ -0.13
TRIM49D1-202ENST00000530311 WRNQ14191 1432 aaPredicted RBP eCLIP14.19□□□□□ -0.14
TRIM49D1-202ENST00000530311 TNIKQ9UKE5 1360 aa14.19□□□□□ -0.14
TRIM49D1-202ENST00000530311 PEG3Q9GZU2 1588 aa14.18□□□□□ -0.14
TRIM49D1-202ENST00000530311 SCAF1Q9H7N4 1312 aaKnown RBP14.14□□□□□ -0.15
TRIM49D1-202ENST00000530311 EEA1Q15075 1411 aa14.11□□□□□ -0.15
TRIM49D1-202ENST00000530311 GOLGA3Q08378 1498 aa14.07□□□□□ -0.16
TRIM49D1-202ENST00000530311 ATAD2BQ9ULI0 1458 aa14.06□□□□□ -0.16
TRIM49D1-202ENST00000530311 SYNJ1O43426 1573 aa14.05□□□□□ -0.16
TRIM49D1-202ENST00000530311 DIEXFQ68CQ4 756 aaKnown RBP14.02□□□□□ -0.17
TRIM49D1-202ENST00000530311 BAZ1BQ9UIG0 1483 aaKnown RBP14.01□□□□□ -0.17
TRIM49D1-202ENST00000530311 RANGAP1P46060 587 aaPredicted RBP14□□□□□ -0.17
TRIM49D1-202ENST00000530311 HNRNPUL2Q1KMD3 747 aaKnown RBP13.98□□□□□ -0.17
TRIM49D1-202ENST00000530311 CEP164Q9UPV0 1460 aa13.98□□□□□ -0.17
TRIM49D1-202ENST00000530311 NEUROD1Q13562 356 aa13.96□□□□□ -0.17
TRIM49D1-202ENST00000530311 CLIP1P30622 1438 aa13.96□□□□□ -0.18
TRIM49D1-202ENST00000530311 ACIN1Q9UKV3 1341 aaKnown RBP13.94□□□□□ -0.18
TRIM49D1-202ENST00000530311 RAPGEF2Q9Y4G8 1499 aa13.94□□□□□ -0.18
TRIM49D1-202ENST00000530311 KIF21BO75037 1637 aa13.93□□□□□ -0.18
TRIM49D1-202ENST00000530311 ZNF316A6NFI3 1004 aaPredicted RBP13.89□□□□□ -0.19
TRIM49D1-202ENST00000530311 VPS8Q8N3P4 1428 aa13.88□□□□□ -0.19
TRIM49D1-202ENST00000530311 APLP2Q06481 763 aa13.85□□□□□ -0.19
TRIM49D1-202ENST00000530311 HMGXB3Q12766 1538 aa13.83□□□□□ -0.2
TRIM49D1-202ENST00000530311 TOP2BQ02880 1626 aa13.83□□□□□ -0.2
TRIM49D1-202ENST00000530311 PHF23Q9BUL5 403 aaPredicted RBP13.81□□□□□ -0.2
TRIM49D1-202ENST00000530311 GTF3C3Q9Y5Q9 886 aa13.81□□□□□ -0.2
TRIM49D1-202ENST00000530311 CENPBP07199 599 aaPredicted RBP13.79□□□□□ -0.2
TRIM49D1-202ENST00000530311 NCAPD3P42695 1498 aa13.79□□□□□ -0.2
TRIM49D1-202ENST00000530311 BIVM-ERCC5R4GMW8 1640 aa13.77□□□□□ -0.2
TRIM49D1-202ENST00000530311 KANK4Q5T7N3 995 aaPredicted RBP13.75□□□□□ -0.21
TRIM49D1-202ENST00000530311 MIER1Q8N108 512 aa13.75□□□□□ -0.21
TRIM49D1-202ENST00000530311 YTHDC1Q96MU7 727 aaKnown RBP13.75□□□□□ -0.21
TRIM49D1-202ENST00000530311 PRXQ9BXM0 1461 aa13.75□□□□□ -0.21
TRIM49D1-202ENST00000530311 PELP1Q8IZL8 1130 aaKnown RBP13.75□□□□□ -0.21
TRIM49D1-202ENST00000530311 CUX1P39880 1505 aa13.73□□□□□ -0.21
TRIM49D1-202ENST00000530311 ARAP1Q96P48 1450 aa13.72□□□□□ -0.21
TRIM49D1-202ENST00000530311 ERICH3Q5RHP9 1530 aa13.69□□□□□ -0.22
TRIM49D1-202ENST00000530311 CFTRP13569 1480 aa13.67□□□□□ -0.22
TRIM49D1-202ENST00000530311 KIF27Q86VH2 1401 aa13.66□□□□□ -0.22
TRIM49D1-202ENST00000530311 PRDM2Q13029 1718 aa13.66□□□□□ -0.22
TRIM49D1-202ENST00000530311 DHX57Q6P158 1386 aaKnown RBP13.64□□□□□ -0.23
TRIM49D1-202ENST00000530311 ITGAEP38570 1179 aa13.6□□□□□ -0.23
TRIM49D1-202ENST00000530311 ARHGAP35Q9NRY4 1499 aa13.6□□□□□ -0.23
TRIM49D1-202ENST00000530311 CC2D2AQ9P2K1 1620 aa13.58□□□□□ -0.24
TRIM49D1-202ENST00000530311 IGF1RP08069 1367 aa13.57□□□□□ -0.24
TRIM49D1-202ENST00000530311 RRBP1Q9P2E9 1410 aaKnown RBP13.56□□□□□ -0.24
TRIM49D1-202ENST00000530311 CUX2O14529 1486 aa13.55□□□□□ -0.24
TRIM49D1-202ENST00000530311 CLSPNQ9HAW4 1339 aa13.55□□□□□ -0.24
TRIM49D1-202ENST00000530311 CCNB3Q8WWL7 1395 aa13.54□□□□□ -0.24
TRIM49D1-202ENST00000530311 CADPSQ9ULU8 1353 aa13.5□□□□□ -0.25
TRIM49D1-202ENST00000530311 CARMIL1Q5VZK9 1371 aa13.49□□□□□ -0.25
TRIM49D1-202ENST00000530311 P3H3Q8IVL6 736 aa13.49□□□□□ -0.25
TRIM49D1-202ENST00000530311 FGD5Q6ZNL6 1462 aa13.47□□□□□ -0.25
TRIM49D1-202ENST00000530311 RAB3GAP2Q9H2M9 1393 aa13.45□□□□□ -0.26
TRIM49D1-202ENST00000530311 ATP1B4Q9UN42 357 aaPredicted RBP13.44□□□□□ -0.26
TRIM49D1-202ENST00000530311 PHLDB1Q86UU1 1377 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms