RNA–Protein interactions for RNA: ENST00000530141.5

CMTM1-214, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 880 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-214ENST00000530141 AEBP2Q6ZN18 517 aaPredicted RBP21.82■■□□□ 1.08
CMTM1-214ENST00000530141 CHIC1Q5VXU3 224 aa21.07■□□□□ 0.96
CMTM1-214ENST00000530141 NISCHQ9Y2I1 1504 aa18.67■□□□□ 0.58
CMTM1-214ENST00000530141 SENP3Q9H4L4 574 aaPredicted RBP18.56■□□□□ 0.56
CMTM1-214ENST00000530141 PHF23Q9BUL5 403 aaPredicted RBP18.5■□□□□ 0.55
CMTM1-214ENST00000530141 ABCC9O60706 1549 aa17.5■□□□□ 0.39
CMTM1-214ENST00000530141 FOXD1Q16676 465 aa17.25■□□□□ 0.35
CMTM1-214ENST00000530141 PLPPR3Q6T4P5 718 aa16.99■□□□□ 0.31
CMTM1-214ENST00000530141 CCDC180Q9P1Z9 1646 aa16.95■□□□□ 0.3
CMTM1-214ENST00000530141 DNAJC5BQ9UF47 199 aa16.78■□□□□ 0.28
CMTM1-214ENST00000530141 PPP6R1Q9UPN7 881 aa16.41■□□□□ 0.22
CMTM1-214ENST00000530141 ADRA2BP18089 450 aa16.37■□□□□ 0.21
CMTM1-214ENST00000530141 RB1CC1Q8TDY2 1594 aa16.32■□□□□ 0.2
CMTM1-214ENST00000530141 PABPN1Q86U42 306 aaKnown RBP eCLIP16.19■□□□□ 0.18
CMTM1-214ENST00000530141 PIAS4Q8N2W9 510 aaPredicted RBP16.19■□□□□ 0.18
CMTM1-214ENST00000530141 UNC13AQ9UPW8 1703 aa16.16■□□□□ 0.18
CMTM1-214ENST00000530141 NACADO15069 1562 aa16.06■□□□□ 0.16
CMTM1-214ENST00000530141 MSH5O43196 834 aa16.02■□□□□ 0.16
CMTM1-214ENST00000530141 DCAF8L2P0C7V8 631 aa16■□□□□ 0.15
CMTM1-214ENST00000530141 BICRAQ9NZM4 1560 aa15.97■□□□□ 0.15
CMTM1-214ENST00000530141 POTEDQ86YR6 584 aa15.88■□□□□ 0.13
CMTM1-214ENST00000530141 CC2D2AQ9P2K1 1620 aa15.76■□□□□ 0.11
CMTM1-214ENST00000530141 CECR2Q9BXF3 1484 aa15.72■□□□□ 0.11
CMTM1-214ENST00000530141 MYO15BQ96JP2 1530 aa15.59■□□□□ 0.09
CMTM1-214ENST00000530141 EIF4G1Q04637 1599 aaKnown RBP15.58■□□□□ 0.08
CMTM1-214ENST00000530141 SCRIBQ14160 1630 aa15.57■□□□□ 0.08
CMTM1-214ENST00000530141 DNAJC5Q9H3Z4 198 aa15.57■□□□□ 0.08
CMTM1-214ENST00000530141 SHROOM4Q9ULL8 1493 aa15.46■□□□□ 0.07
CMTM1-214ENST00000530141 ZCCHC6Q5VYS8 1495 aaKnown RBP15.41■□□□□ 0.06
CMTM1-214ENST00000530141 DCAF1Q9Y4B6 1507 aa15.27■□□□□ 0.04
CMTM1-214ENST00000530141 CUX2O14529 1486 aa15.09■□□□□ 0.01
CMTM1-214ENST00000530141 ERCC6Q03468 1493 aa15.06■□□□□ 0
CMTM1-214ENST00000530141 SCAF1Q9H7N4 1312 aaKnown RBP14.99□□□□□ -0.01
CMTM1-214ENST00000530141 PPP4R3CPQ6ZMV5 832 aa14.95□□□□□ -0.02
CMTM1-214ENST00000530141 NESP48681 1621 aa14.93□□□□□ -0.02
CMTM1-214ENST00000530141 MAPK8IP2Q13387 824 aaPredicted RBP14.93□□□□□ -0.02
CMTM1-214ENST00000530141 TRIM41Q8WV44 630 aa14.87□□□□□ -0.03
CMTM1-214ENST00000530141 THOC2Q8NI27 1593 aaKnown RBP14.85□□□□□ -0.03
CMTM1-214ENST00000530141 NCAPD3P42695 1498 aa14.82□□□□□ -0.04
CMTM1-214ENST00000530141 SMARCA2P51531 1590 aa14.79□□□□□ -0.04
CMTM1-214ENST00000530141 ATAD2BQ9ULI0 1458 aa14.79□□□□□ -0.04
CMTM1-214ENST00000530141 DMRT2Q9Y5R5 561 aa14.78□□□□□ -0.04
CMTM1-214ENST00000530141 KIF21AQ7Z4S6 1674 aa14.75□□□□□ -0.05
CMTM1-214ENST00000530141 SMARCA4P51532 1647 aa14.72□□□□□ -0.05
CMTM1-214ENST00000530141 HMGXB3Q12766 1538 aa14.71□□□□□ -0.05
CMTM1-214ENST00000530141 BAZ1BQ9UIG0 1483 aaKnown RBP14.63□□□□□ -0.07
CMTM1-214ENST00000530141 LAMC3Q9Y6N6 1575 aa14.6□□□□□ -0.07
CMTM1-214ENST00000530141 CNKSR2Q8WXI2 1034 aa14.59□□□□□ -0.07
CMTM1-214ENST00000530141 BAZ1AQ9NRL2 1556 aaPredicted RBP14.53□□□□□ -0.08
CMTM1-214ENST00000530141 PEG3Q9GZU2 1588 aa14.48□□□□□ -0.09
CMTM1-214ENST00000530141 NCBP3Q53F19 620 aaKnown RBP14.48□□□□□ -0.09
CMTM1-214ENST00000530141 MROH2BQ7Z745 1585 aa14.47□□□□□ -0.09
CMTM1-214ENST00000530141 MRC2Q9UBG0 1479 aa14.47□□□□□ -0.09
CMTM1-214ENST00000530141 PDS5BQ9NTI5 1447 aa14.46□□□□□ -0.09
CMTM1-214ENST00000530141 WDR62O43379 1518 aa14.46□□□□□ -0.1
CMTM1-214ENST00000530141 HOXD11P31277 338 aaPredicted RBP14.39□□□□□ -0.11
CMTM1-214ENST00000530141 RNF216Q9NWF9 866 aaPredicted RBP14.37□□□□□ -0.11
CMTM1-214ENST00000530141 CADPSQ9ULU8 1353 aa14.35□□□□□ -0.11
CMTM1-214ENST00000530141 RIMBP3CA6NJZ7 1639 aa14.35□□□□□ -0.11
CMTM1-214ENST00000530141 RIMBP3BA6NNM3 1639 aa14.35□□□□□ -0.11
CMTM1-214ENST00000530141 RIMBP3Q9UFD9 1639 aa14.35□□□□□ -0.11
CMTM1-214ENST00000530141 CEP164Q9UPV0 1460 aa14.33□□□□□ -0.12
CMTM1-214ENST00000530141 WIZO95785 1651 aa14.33□□□□□ -0.12
CMTM1-214ENST00000530141 SUPT5HO00267 1087 aaKnown RBP14.29□□□□□ -0.12
CMTM1-214ENST00000530141 KCNA4P22459 653 aa14.29□□□□□ -0.12
CMTM1-214ENST00000530141 OSCARQ8IYS5 282 aa14.28□□□□□ -0.12
CMTM1-214ENST00000530141 FANCD2Q9BXW9 1451 aa14.28□□□□□ -0.12
CMTM1-214ENST00000530141 NPM3O75607 178 aaKnown RBP14.26□□□□□ -0.13
CMTM1-214ENST00000530141 URB2Q14146 1524 aaKnown RBP14.25□□□□□ -0.13
CMTM1-214ENST00000530141 ARHGEF11O15085 1522 aa14.21□□□□□ -0.13
CMTM1-214ENST00000530141 ZNF608Q9ULD9 1512 aaPredicted RBP14.16□□□□□ -0.14
CMTM1-214ENST00000530141 CFTRP13569 1480 aa14.12□□□□□ -0.15
CMTM1-214ENST00000530141 DCAF8L1A6NGE4 600 aa14.11□□□□□ -0.15
CMTM1-214ENST00000530141 CHD1O14646 1710 aa14.1□□□□□ -0.15
CMTM1-214ENST00000530141 CYB5RLQ6IPT4 315 aa14.09□□□□□ -0.15
CMTM1-214ENST00000530141 RSF1Q96T23 1441 aaPredicted RBP14.08□□□□□ -0.15
CMTM1-214ENST00000530141 TRHP20396 242 aaPredicted RBP14.08□□□□□ -0.16
CMTM1-214ENST00000530141 EIF4G3O43432 1585 aaKnown RBP14.08□□□□□ -0.16
CMTM1-214ENST00000530141 PRDM2Q13029 1718 aa14.07□□□□□ -0.16
CMTM1-214ENST00000530141 ARAP1Q96P48 1450 aa14.07□□□□□ -0.16
CMTM1-214ENST00000530141 TOP2AP11388 1531 aaKnown RBP14.01□□□□□ -0.17
CMTM1-214ENST00000530141 IFT140Q96RY7 1462 aa14□□□□□ -0.17
CMTM1-214ENST00000530141 TOPBP1Q92547 1522 aa13.98□□□□□ -0.17
CMTM1-214ENST00000530141 AQRO60306 1485 aaKnown RBP eCLIP13.93□□□□□ -0.18
CMTM1-214ENST00000530141 FBLN2P98095 1184 aa13.91□□□□□ -0.18
CMTM1-214ENST00000530141 TARBP1Q13395 1621 aaKnown RBP13.9□□□□□ -0.18
CMTM1-214ENST00000530141 DNMBPQ6XZF7 1577 aa13.87□□□□□ -0.19
CMTM1-214ENST00000530141 CCDC88BA6NC98 1476 aa13.86□□□□□ -0.19
CMTM1-214ENST00000530141 CLASP1Q7Z460 1538 aa13.83□□□□□ -0.2
CMTM1-214ENST00000530141 RAD54L2Q9Y4B4 1467 aa13.82□□□□□ -0.2
CMTM1-214ENST00000530141 POLA1P09884 1462 aaPredicted RBP13.8□□□□□ -0.2
CMTM1-214ENST00000530141 SNAPC4Q5SXM2 1469 aa13.8□□□□□ -0.2
CMTM1-214ENST00000530141 TDRD9Q8NDG6 1382 aaKnown RBP13.77□□□□□ -0.21
CMTM1-214ENST00000530141 ABCC8Q09428 1581 aa13.74□□□□□ -0.21
CMTM1-214ENST00000530141 CACNB1Q02641 598 aaPredicted RBP13.73□□□□□ -0.21
CMTM1-214ENST00000530141 SYNJ1O43426 1573 aa13.73□□□□□ -0.21
CMTM1-214ENST00000530141 RNF39Q9H2S5 420 aa13.7□□□□□ -0.22
CMTM1-214ENST00000530141 ERCC6L2Q5T890 1561 aa13.7□□□□□ -0.22
CMTM1-214ENST00000530141 FGD5Q6ZNL6 1462 aa13.68□□□□□ -0.22
CMTM1-214ENST00000530141 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms