RNA–Protein interactions for RNA: ENST00000521646.1

CSMD1-210, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 5

Gene CSMD1, Length 1,003 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-210ENST00000521646 AEBP2Q6ZN18 517 aaPredicted RBP34.11■■■■□ 3.05
CSMD1-210ENST00000521646 CHIC1Q5VXU3 224 aa32.87■■■□□ 2.85
CSMD1-210ENST00000521646 SENP3Q9H4L4 574 aaPredicted RBP29.07■■■□□ 2.24
CSMD1-210ENST00000521646 PHF23Q9BUL5 403 aaPredicted RBP28.84■■■□□ 2.21
CSMD1-210ENST00000521646 NISCHQ9Y2I1 1504 aa28.34■■■□□ 2.13
CSMD1-210ENST00000521646 FOXD1Q16676 465 aa27.03■■□□□ 1.92
CSMD1-210ENST00000521646 PLPPR3Q6T4P5 718 aa26.51■■□□□ 1.83
CSMD1-210ENST00000521646 ABCC9O60706 1549 aa25.66■■□□□ 1.7
CSMD1-210ENST00000521646 PPP6R1Q9UPN7 881 aa25.64■■□□□ 1.7
CSMD1-210ENST00000521646 ADRA2BP18089 450 aa25.63■■□□□ 1.69
CSMD1-210ENST00000521646 CCDC180Q9P1Z9 1646 aa25.42■■□□□ 1.66
CSMD1-210ENST00000521646 PIAS4Q8N2W9 510 aaPredicted RBP25.41■■□□□ 1.66
CSMD1-210ENST00000521646 MSH5O43196 834 aa25.13■■□□□ 1.61
CSMD1-210ENST00000521646 DNAJC5BQ9UF47 199 aa24.34■■□□□ 1.49
CSMD1-210ENST00000521646 RB1CC1Q8TDY2 1594 aa24.23■■□□□ 1.47
CSMD1-210ENST00000521646 NACADO15069 1562 aa24.04■■□□□ 1.44
CSMD1-210ENST00000521646 UNC13AQ9UPW8 1703 aa23.88■■□□□ 1.41
CSMD1-210ENST00000521646 PABPN1Q86U42 306 aaKnown RBP eCLIP23.88■■□□□ 1.41
CSMD1-210ENST00000521646 DCAF8L2P0C7V8 631 aa23.86■■□□□ 1.41
CSMD1-210ENST00000521646 BICRAQ9NZM4 1560 aa23.74■■□□□ 1.39
CSMD1-210ENST00000521646 POTEDQ86YR6 584 aa23.72■■□□□ 1.39
CSMD1-210ENST00000521646 MYO15BQ96JP2 1530 aa23.67■■□□□ 1.38
CSMD1-210ENST00000521646 SCAF1Q9H7N4 1312 aaKnown RBP23.49■■□□□ 1.35
CSMD1-210ENST00000521646 ZCCHC6Q5VYS8 1495 aaKnown RBP23.49■■□□□ 1.35
CSMD1-210ENST00000521646 MAPK8IP2Q13387 824 aaPredicted RBP23.41■■□□□ 1.34
CSMD1-210ENST00000521646 DCAF1Q9Y4B6 1507 aa23.33■■□□□ 1.33
CSMD1-210ENST00000521646 PPP4R3CPQ6ZMV5 832 aa23.32■■□□□ 1.32
CSMD1-210ENST00000521646 SCRIBQ14160 1630 aa23.26■■□□□ 1.31
CSMD1-210ENST00000521646 CC2D2AQ9P2K1 1620 aa23.17■■□□□ 1.3
CSMD1-210ENST00000521646 SHROOM4Q9ULL8 1493 aa23.15■■□□□ 1.3
CSMD1-210ENST00000521646 DMRT2Q9Y5R5 561 aa23.1■■□□□ 1.29
CSMD1-210ENST00000521646 EIF4G1Q04637 1599 aaKnown RBP23.07■■□□□ 1.28
CSMD1-210ENST00000521646 CECR2Q9BXF3 1484 aa23.07■■□□□ 1.28
CSMD1-210ENST00000521646 CNKSR2Q8WXI2 1034 aa22.75■■□□□ 1.23
CSMD1-210ENST00000521646 NCBP3Q53F19 620 aaKnown RBP22.6■■□□□ 1.21
CSMD1-210ENST00000521646 HOXD11P31277 338 aaPredicted RBP22.42■■□□□ 1.18
CSMD1-210ENST00000521646 RNF216Q9NWF9 866 aaPredicted RBP22.41■■□□□ 1.18
CSMD1-210ENST00000521646 DCAF8L1A6NGE4 600 aa22.29■■□□□ 1.16
CSMD1-210ENST00000521646 DNAJC5Q9H3Z4 198 aa22.25■■□□□ 1.15
CSMD1-210ENST00000521646 NCAPD3P42695 1498 aa22.25■■□□□ 1.15
CSMD1-210ENST00000521646 KCNA4P22459 653 aa22.21■■□□□ 1.15
CSMD1-210ENST00000521646 ATAD2BQ9ULI0 1458 aa22.21■■□□□ 1.15
CSMD1-210ENST00000521646 NPM3O75607 178 aaKnown RBP22.2■■□□□ 1.14
CSMD1-210ENST00000521646 SMARCA4P51532 1647 aa22.15■■□□□ 1.14
CSMD1-210ENST00000521646 NESP48681 1621 aa22.08■■□□□ 1.13
CSMD1-210ENST00000521646 HMGXB3Q12766 1538 aa22.06■■□□□ 1.12
CSMD1-210ENST00000521646 CUX2O14529 1486 aa22.05■■□□□ 1.12
CSMD1-210ENST00000521646 SMARCA2P51531 1590 aa22.02■■□□□ 1.12
CSMD1-210ENST00000521646 ERCC6Q03468 1493 aa22.02■■□□□ 1.12
CSMD1-210ENST00000521646 BAZ1AQ9NRL2 1556 aaPredicted RBP21.93■■□□□ 1.1
CSMD1-210ENST00000521646 PEG3Q9GZU2 1588 aa21.92■■□□□ 1.1
CSMD1-210ENST00000521646 MROH2BQ7Z745 1585 aa21.91■■□□□ 1.1
CSMD1-210ENST00000521646 BAZ1BQ9UIG0 1483 aaKnown RBP21.9■■□□□ 1.1
CSMD1-210ENST00000521646 THOC2Q8NI27 1593 aaKnown RBP21.84■■□□□ 1.09
CSMD1-210ENST00000521646 KIF21AQ7Z4S6 1674 aa21.74■■□□□ 1.07
CSMD1-210ENST00000521646 LAMC3Q9Y6N6 1575 aa21.72■■□□□ 1.07
CSMD1-210ENST00000521646 WIZO95785 1651 aa21.64■■□□□ 1.05
CSMD1-210ENST00000521646 PDS5BQ9NTI5 1447 aa21.55■■□□□ 1.04
CSMD1-210ENST00000521646 CADPSQ9ULU8 1353 aa21.54■■□□□ 1.04
CSMD1-210ENST00000521646 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.49■■□□□ 1.03
CSMD1-210ENST00000521646 MRC2Q9UBG0 1479 aa21.45■■□□□ 1.03
CSMD1-210ENST00000521646 WDR62O43379 1518 aa21.45■■□□□ 1.02
CSMD1-210ENST00000521646 RNF39Q9H2S5 420 aa21.45■■□□□ 1.02
CSMD1-210ENST00000521646 RSF1Q96T23 1441 aaPredicted RBP21.37■■□□□ 1.01
CSMD1-210ENST00000521646 CACNB1Q02641 598 aaPredicted RBP21.35■■□□□ 1.01
CSMD1-210ENST00000521646 FANCD2Q9BXW9 1451 aa21.32■■□□□ 1
CSMD1-210ENST00000521646 CFTRP13569 1480 aa21.31■■□□□ 1
CSMD1-210ENST00000521646 CEP164Q9UPV0 1460 aa21.31■■□□□ 1
CSMD1-210ENST00000521646 TOP2AP11388 1531 aaKnown RBP21.27■■□□□ 1
CSMD1-210ENST00000521646 URB2Q14146 1524 aaKnown RBP21.24■□□□□ 0.99
CSMD1-210ENST00000521646 C1QBPQ07021 282 aaKnown RBP21.2■□□□□ 0.98
CSMD1-210ENST00000521646 TRIM41Q8WV44 630 aa21.19■□□□□ 0.98
CSMD1-210ENST00000521646 SLC4A1APQ9BWU0 796 aaKnown RBP21.09■□□□□ 0.97
CSMD1-210ENST00000521646 CCDC88BA6NC98 1476 aa21.07■□□□□ 0.96
CSMD1-210ENST00000521646 SLC4A2P04920 1241 aa21.07■□□□□ 0.96
CSMD1-210ENST00000521646 PRDM2Q13029 1718 aa21.05■□□□□ 0.96
CSMD1-210ENST00000521646 ZNF608Q9ULD9 1512 aaPredicted RBP21.04■□□□□ 0.96
CSMD1-210ENST00000521646 U3KPZ7 1027 aaPredicted RBP20.98■□□□□ 0.95
CSMD1-210ENST00000521646 OSCARQ8IYS5 282 aa20.97■□□□□ 0.95
CSMD1-210ENST00000521646 TOPBP1Q92547 1522 aa20.94■□□□□ 0.94
CSMD1-210ENST00000521646 IFT140Q96RY7 1462 aa20.88■□□□□ 0.93
CSMD1-210ENST00000521646 RIMBP3CA6NJZ7 1639 aa20.88■□□□□ 0.93
CSMD1-210ENST00000521646 RIMBP3BA6NNM3 1639 aa20.88■□□□□ 0.93
CSMD1-210ENST00000521646 RIMBP3Q9UFD9 1639 aa20.88■□□□□ 0.93
CSMD1-210ENST00000521646 EIF4G3O43432 1585 aaKnown RBP20.85■□□□□ 0.93
CSMD1-210ENST00000521646 DNMBPQ6XZF7 1577 aa20.81■□□□□ 0.92
CSMD1-210ENST00000521646 TARBP1Q13395 1621 aaKnown RBP20.81■□□□□ 0.92
CSMD1-210ENST00000521646 ARHGEF11O15085 1522 aa20.78■□□□□ 0.92
CSMD1-210ENST00000521646 AQRO60306 1485 aaKnown RBP eCLIP20.77■□□□□ 0.92
CSMD1-210ENST00000521646 POLA1P09884 1462 aaPredicted RBP20.73■□□□□ 0.91
CSMD1-210ENST00000521646 CHD1O14646 1710 aa20.73■□□□□ 0.91
CSMD1-210ENST00000521646 RAD54L2Q9Y4B4 1467 aa20.7■□□□□ 0.9
CSMD1-210ENST00000521646 ABCC8Q09428 1581 aa20.69■□□□□ 0.9
CSMD1-210ENST00000521646 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.61■□□□□ 0.89
CSMD1-210ENST00000521646 HNRNPUL2Q1KMD3 747 aaKnown RBP20.61■□□□□ 0.89
CSMD1-210ENST00000521646 ARAP1Q96P48 1450 aa20.61■□□□□ 0.89
CSMD1-210ENST00000521646 TDRD9Q8NDG6 1382 aaKnown RBP20.59■□□□□ 0.89
CSMD1-210ENST00000521646 CAPN15O75808 1086 aa20.59■□□□□ 0.89
CSMD1-210ENST00000521646 CUX1P39880 1505 aa20.58■□□□□ 0.89
CSMD1-210ENST00000521646 SPINK5Q9NQ38 1064 aaPredicted RBP20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms