RNA–Protein interactions for RNA: ENST00000517545.5

PCM1-203, Transcript of pericentriolar material 1, humanhuman

TSL 1 (best)

Gene PCM1, Length 3,440 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-203ENST00000517545 NISCHQ9Y2I1 1504 aa24.27■■□□□ 1.48
PCM1-203ENST00000517545 SHROOM4Q9ULL8 1493 aa21.31■■□□□ 1
PCM1-203ENST00000517545 SUPT5HO00267 1087 aaKnown RBP21.1■□□□□ 0.97
PCM1-203ENST00000517545 HRCP23327 699 aa20.79■□□□□ 0.92
PCM1-203ENST00000517545 MYO15BQ96JP2 1530 aa20.73■□□□□ 0.91
PCM1-203ENST00000517545 CHIC1Q5VXU3 224 aa20.65■□□□□ 0.9
PCM1-203ENST00000517545 ZCCHC6Q5VYS8 1495 aaKnown RBP20.61■□□□□ 0.89
PCM1-203ENST00000517545 PCGF6Q9BYE7 350 aa20.56■□□□□ 0.88
PCM1-203ENST00000517545 PPARGC1BQ86YN6 1023 aaKnown RBP20.45■□□□□ 0.86
PCM1-203ENST00000517545 DCAF8L2P0C7V8 631 aa20.28■□□□□ 0.84
PCM1-203ENST00000517545 CCDC180Q9P1Z9 1646 aa20.25■□□□□ 0.83
PCM1-203ENST00000517545 LOC105371045A0A1W2PR82 267 aa20.17■□□□□ 0.82
PCM1-203ENST00000517545 DCAF1Q9Y4B6 1507 aa20.13■□□□□ 0.81
PCM1-203ENST00000517545 TRIM26Q12899 539 aaPredicted RBP19.93■□□□□ 0.78
PCM1-203ENST00000517545 ABCC9O60706 1549 aa19.64■□□□□ 0.73
PCM1-203ENST00000517545 ZEB1P37275 1124 aaPredicted RBP19.61■□□□□ 0.73
PCM1-203ENST00000517545 SCAF1Q9H7N4 1312 aaKnown RBP19.53■□□□□ 0.72
PCM1-203ENST00000517545 FAM9AQ8IZU1 332 aaPredicted RBP19.52■□□□□ 0.72
PCM1-203ENST00000517545 TRIM41Q8WV44 630 aa19.52■□□□□ 0.72
PCM1-203ENST00000517545 PELP1Q8IZL8 1130 aaKnown RBP19.47■□□□□ 0.71
PCM1-203ENST00000517545 RSF1Q96T23 1441 aaPredicted RBP19.46■□□□□ 0.7
PCM1-203ENST00000517545 EHMT2Q96KQ7 1210 aa19.45■□□□□ 0.7
PCM1-203ENST00000517545 RB1CC1Q8TDY2 1594 aa19.34■□□□□ 0.69
PCM1-203ENST00000517545 SCRIBQ14160 1630 aa19.3■□□□□ 0.68
PCM1-203ENST00000517545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.18■□□□□ 0.66
PCM1-203ENST00000517545 NEUROD1Q13562 356 aa19.11■□□□□ 0.65
PCM1-203ENST00000517545 ACIN1Q9UKV3 1341 aaKnown RBP19.11■□□□□ 0.65
PCM1-203ENST00000517545 CCER1Q8TC90 406 aaPredicted RBP19.09■□□□□ 0.65
PCM1-203ENST00000517545 CECR2Q9BXF3 1484 aa19.03■□□□□ 0.64
PCM1-203ENST00000517545 MROH2BQ7Z745 1585 aa18.97■□□□□ 0.63
PCM1-203ENST00000517545 DIEXFQ68CQ4 756 aaKnown RBP18.97■□□□□ 0.63
PCM1-203ENST00000517545 GTF3C3Q9Y5Q9 886 aa18.96■□□□□ 0.63
PCM1-203ENST00000517545 TTBK1Q5TCY1 1321 aaPredicted RBP18.93■□□□□ 0.62
PCM1-203ENST00000517545 NACADO15069 1562 aa18.91■□□□□ 0.62
PCM1-203ENST00000517545 WIZO95785 1651 aa18.88■□□□□ 0.61
PCM1-203ENST00000517545 CENPBP07199 599 aaPredicted RBP18.87■□□□□ 0.61
PCM1-203ENST00000517545 EIF4G1Q04637 1599 aaKnown RBP18.75■□□□□ 0.59
PCM1-203ENST00000517545 WRNQ14191 1432 aaPredicted RBP eCLIP18.72■□□□□ 0.59
PCM1-203ENST00000517545 CEP162Q5TB80 1403 aa18.71■□□□□ 0.59
PCM1-203ENST00000517545 BAZ1AQ9NRL2 1556 aaPredicted RBP18.7■□□□□ 0.58
PCM1-203ENST00000517545 CCDC88BA6NC98 1476 aa18.7■□□□□ 0.58
PCM1-203ENST00000517545 ABCC8Q09428 1581 aa18.69■□□□□ 0.58
PCM1-203ENST00000517545 ZNF316A6NFI3 1004 aaPredicted RBP18.66■□□□□ 0.58
PCM1-203ENST00000517545 YTHDC1Q96MU7 727 aaKnown RBP18.66■□□□□ 0.58
PCM1-203ENST00000517545 SOGA1O94964 1423 aa18.63■□□□□ 0.57
PCM1-203ENST00000517545 PABPN1Q86U42 306 aaKnown RBP eCLIP18.62■□□□□ 0.57
PCM1-203ENST00000517545 TNIKQ9UKE5 1360 aa18.59■□□□□ 0.57
PCM1-203ENST00000517545 MYT1Q01538 1121 aa18.56■□□□□ 0.56
PCM1-203ENST00000517545 UBTFP17480 764 aaKnown RBP18.55■□□□□ 0.56
PCM1-203ENST00000517545 MIER1Q8N108 512 aa18.54■□□□□ 0.56
PCM1-203ENST00000517545 RUSC2Q8N2Y8 1516 aa18.53■□□□□ 0.56
PCM1-203ENST00000517545 CSRNP3Q8WYN3 585 aa18.51■□□□□ 0.55
PCM1-203ENST00000517545 TOP2AP11388 1531 aaKnown RBP18.5■□□□□ 0.55
PCM1-203ENST00000517545 HNRNPUL2Q1KMD3 747 aaKnown RBP18.48■□□□□ 0.55
PCM1-203ENST00000517545 UNC13AQ9UPW8 1703 aa18.47■□□□□ 0.55
PCM1-203ENST00000517545 SMARCA2P51531 1590 aa18.46■□□□□ 0.54
PCM1-203ENST00000517545 EEA1Q15075 1411 aa18.4■□□□□ 0.54
PCM1-203ENST00000517545 GOLGA3Q08378 1498 aa18.39■□□□□ 0.53
PCM1-203ENST00000517545 SMARCA4P51532 1647 aa18.37■□□□□ 0.53
PCM1-203ENST00000517545 BICRAQ9NZM4 1560 aa18.3■□□□□ 0.52
PCM1-203ENST00000517545 CLIP1P30622 1438 aa18.25■□□□□ 0.51
PCM1-203ENST00000517545 CEP164Q9UPV0 1460 aa18.22■□□□□ 0.51
PCM1-203ENST00000517545 RANGAP1P46060 587 aaPredicted RBP18.21■□□□□ 0.51
PCM1-203ENST00000517545 VPS8Q8N3P4 1428 aa18.2■□□□□ 0.5
PCM1-203ENST00000517545 APLP2Q06481 763 aa18.17■□□□□ 0.5
PCM1-203ENST00000517545 SYNJ1O43426 1573 aa18.15■□□□□ 0.5
PCM1-203ENST00000517545 KIF21BO75037 1637 aa18.15■□□□□ 0.5
PCM1-203ENST00000517545 RAPGEF2Q9Y4G8 1499 aa18.12■□□□□ 0.49
PCM1-203ENST00000517545 SUPT16HQ9Y5B9 1047 aaKnown RBP18.12■□□□□ 0.49
PCM1-203ENST00000517545 DHX57Q6P158 1386 aaKnown RBP18.08■□□□□ 0.48
PCM1-203ENST00000517545 BAZ1BQ9UIG0 1483 aaKnown RBP18.04■□□□□ 0.48
PCM1-203ENST00000517545 CLSPNQ9HAW4 1339 aa18.01■□□□□ 0.47
PCM1-203ENST00000517545 KANK4Q5T7N3 995 aaPredicted RBP17.98■□□□□ 0.47
PCM1-203ENST00000517545 TSHZ2Q9NRE2 1034 aa17.96■□□□□ 0.47
PCM1-203ENST00000517545 KCNH8Q96L42 1107 aa17.91■□□□□ 0.46
PCM1-203ENST00000517545 PEG3Q9GZU2 1588 aa17.91■□□□□ 0.46
PCM1-203ENST00000517545 ARAP1Q96P48 1450 aa17.89■□□□□ 0.46
PCM1-203ENST00000517545 ITGAEP38570 1179 aa17.84■□□□□ 0.45
PCM1-203ENST00000517545 ATAD2BQ9ULI0 1458 aa17.83■□□□□ 0.45
PCM1-203ENST00000517545 RRBP1Q9P2E9 1410 aaKnown RBP17.83■□□□□ 0.44
PCM1-203ENST00000517545 BCANQ96GW7 911 aa17.81■□□□□ 0.44
PCM1-203ENST00000517545 PRXQ9BXM0 1461 aa17.81■□□□□ 0.44
PCM1-203ENST00000517545 TOP2BQ02880 1626 aa17.81■□□□□ 0.44
PCM1-203ENST00000517545 ANP32EQ9BTT0 268 aa17.81■□□□□ 0.44
PCM1-203ENST00000517545 CCNB3Q8WWL7 1395 aa17.77■□□□□ 0.44
PCM1-203ENST00000517545 ERICH3Q5RHP9 1530 aa17.77■□□□□ 0.43
PCM1-203ENST00000517545 CUX2O14529 1486 aa17.76■□□□□ 0.43
PCM1-203ENST00000517545 FKBP8Q14318 412 aa17.71■□□□□ 0.43
PCM1-203ENST00000517545 RAB3GAP2Q9H2M9 1393 aa17.71■□□□□ 0.43
PCM1-203ENST00000517545 MAPKBP1O60336 1514 aa17.69■□□□□ 0.42
PCM1-203ENST00000517545 DDX10Q13206 875 aaKnown RBP17.69■□□□□ 0.42
PCM1-203ENST00000517545 BIVM-ERCC5R4GMW8 1640 aa17.69■□□□□ 0.42
PCM1-203ENST00000517545 ARHGAP35Q9NRY4 1499 aa17.66■□□□□ 0.42
PCM1-203ENST00000517545 SIN3AQ96ST3 1273 aa17.64■□□□□ 0.41
PCM1-203ENST00000517545 WDR97A6NE52 1622 aa17.61■□□□□ 0.41
PCM1-203ENST00000517545 KIF27Q86VH2 1401 aa17.61■□□□□ 0.41
PCM1-203ENST00000517545 HIRIP3Q9BW71 556 aaPredicted RBP17.61■□□□□ 0.41
PCM1-203ENST00000517545 CUX1P39880 1505 aa17.61■□□□□ 0.41
PCM1-203ENST00000517545 CC2D2AQ9P2K1 1620 aa17.6■□□□□ 0.41
PCM1-203ENST00000517545 TRIM52Q96A61 297 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms