RNA–Protein interactions for RNA: ENST00000516699.1

RNU4ATAC3P-201, Transcript of RNA, U4atac small nuclear 3, pseudogene, humanhuman

BASIC

Gene RNU4ATAC3P, Length 126 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4ATAC3P-201ENST00000516699 NISCHQ9Y2I1 1504 aa6.86□□□□□ -1.31
RNU4ATAC3P-201ENST00000516699 AEBP2Q6ZN18 517 aaPredicted RBP6.3□□□□□ -1.4
RNU4ATAC3P-201ENST00000516699 CCDC180Q9P1Z9 1646 aa5.99□□□□□ -1.45
RNU4ATAC3P-201ENST00000516699 ZCCHC6Q5VYS8 1495 aaKnown RBP5.83□□□□□ -1.48
RNU4ATAC3P-201ENST00000516699 CHIC1Q5VXU3 224 aa5.79□□□□□ -1.48
RNU4ATAC3P-201ENST00000516699 DCAF1Q9Y4B6 1507 aa5.76□□□□□ -1.49
RNU4ATAC3P-201ENST00000516699 SHROOM4Q9ULL8 1493 aa5.64□□□□□ -1.51
RNU4ATAC3P-201ENST00000516699 MYO15BQ96JP2 1530 aa5.61□□□□□ -1.51
RNU4ATAC3P-201ENST00000516699 SUPT5HO00267 1087 aaKnown RBP5.57□□□□□ -1.52
RNU4ATAC3P-201ENST00000516699 ABCC9O60706 1549 aa5.56□□□□□ -1.52
RNU4ATAC3P-201ENST00000516699 NACADO15069 1562 aa5.47□□□□□ -1.53
RNU4ATAC3P-201ENST00000516699 HRCP23327 699 aa5.46□□□□□ -1.54
RNU4ATAC3P-201ENST00000516699 RB1CC1Q8TDY2 1594 aa5.45□□□□□ -1.54
RNU4ATAC3P-201ENST00000516699 DCAF8L2P0C7V8 631 aa5.44□□□□□ -1.54
RNU4ATAC3P-201ENST00000516699 SCRIBQ14160 1630 aa5.41□□□□□ -1.54
RNU4ATAC3P-201ENST00000516699 ZEB1P37275 1124 aaPredicted RBP5.4□□□□□ -1.54
RNU4ATAC3P-201ENST00000516699 RSF1Q96T23 1441 aaPredicted RBP5.38□□□□□ -1.55
RNU4ATAC3P-201ENST00000516699 TRIM26Q12899 539 aaPredicted RBP5.36□□□□□ -1.55
RNU4ATAC3P-201ENST00000516699 BAZ1AQ9NRL2 1556 aaPredicted RBP5.35□□□□□ -1.55
RNU4ATAC3P-201ENST00000516699 PCGF6Q9BYE7 350 aa5.34□□□□□ -1.55
RNU4ATAC3P-201ENST00000516699 SENP3Q9H4L4 574 aaPredicted RBP5.31□□□□□ -1.56
RNU4ATAC3P-201ENST00000516699 TRIM41Q8WV44 630 aa5.29□□□□□ -1.56
RNU4ATAC3P-201ENST00000516699 PHF23Q9BUL5 403 aaPredicted RBP5.28□□□□□ -1.56
RNU4ATAC3P-201ENST00000516699 TOP2AP11388 1531 aaKnown RBP5.28□□□□□ -1.56
RNU4ATAC3P-201ENST00000516699 EIF4G1Q04637 1599 aaKnown RBP5.27□□□□□ -1.57
RNU4ATAC3P-201ENST00000516699 EEA1Q15075 1411 aa5.27□□□□□ -1.57
RNU4ATAC3P-201ENST00000516699 PELP1Q8IZL8 1130 aaKnown RBP5.26□□□□□ -1.57
RNU4ATAC3P-201ENST00000516699 MROH2BQ7Z745 1585 aa5.25□□□□□ -1.57
RNU4ATAC3P-201ENST00000516699 WIZO95785 1651 aa5.25□□□□□ -1.57
RNU4ATAC3P-201ENST00000516699 SMARCA4P51532 1647 aa5.25□□□□□ -1.57
RNU4ATAC3P-201ENST00000516699 UNC13AQ9UPW8 1703 aa5.23□□□□□ -1.57
RNU4ATAC3P-201ENST00000516699 WRNQ14191 1432 aaPredicted RBP eCLIP5.21□□□□□ -1.58
RNU4ATAC3P-201ENST00000516699 PEG3Q9GZU2 1588 aa5.21□□□□□ -1.58
RNU4ATAC3P-201ENST00000516699 LOC105371045A0A1W2PR82 267 aa5.2□□□□□ -1.58
RNU4ATAC3P-201ENST00000516699 CECR2Q9BXF3 1484 aa5.2□□□□□ -1.58
RNU4ATAC3P-201ENST00000516699 SMARCA2P51531 1590 aa5.19□□□□□ -1.58
RNU4ATAC3P-201ENST00000516699 KIF21BO75037 1637 aa5.16□□□□□ -1.58
RNU4ATAC3P-201ENST00000516699 GOLGA3Q08378 1498 aa5.16□□□□□ -1.58
RNU4ATAC3P-201ENST00000516699 TNIKQ9UKE5 1360 aa5.15□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 BAZ1BQ9UIG0 1483 aaKnown RBP5.14□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 CEP164Q9UPV0 1460 aa5.14□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 CEP162Q5TB80 1403 aa5.13□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 CCDC88BA6NC98 1476 aa5.13□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 PPARGC1BQ86YN6 1023 aaKnown RBP5.12□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 CENPBP07199 599 aaPredicted RBP5.11□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 MYT1Q01538 1121 aa5.11□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 ABCC8Q09428 1581 aa5.11□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 FAM9AQ8IZU1 332 aaPredicted RBP5.1□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 PRDM2Q13029 1718 aa5.09□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 CCER1Q8TC90 406 aaPredicted RBP5.09□□□□□ -1.59
RNU4ATAC3P-201ENST00000516699 BIVM-ERCC5R4GMW8 1640 aa5.08□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 ERICH3Q5RHP9 1530 aa5.08□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 TOP2BQ02880 1626 aa5.08□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 BICRAQ9NZM4 1560 aa5.08□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 HMGXB3Q12766 1538 aa5.07□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 CLSPNQ9HAW4 1339 aa5.06□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 CSRNP3Q8WYN3 585 aa5.06□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 VPS8Q8N3P4 1428 aa5.06□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 SYNJ1O43426 1573 aa5.04□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 APLP2Q06481 763 aa5.04□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 CLIP1P30622 1438 aa5.04□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 ATAD2BQ9ULI0 1458 aa5.03□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 UBTFP17480 764 aaKnown RBP5.03□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 FOXD1Q16676 465 aa5.03□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 SOGA1O94964 1423 aa5.03□□□□□ -1.6
RNU4ATAC3P-201ENST00000516699 DIEXFQ68CQ4 756 aaKnown RBP5.02□□□□□ -1.61
RNU4ATAC3P-201ENST00000516699 ACIN1Q9UKV3 1341 aaKnown RBP5□□□□□ -1.61
RNU4ATAC3P-201ENST00000516699 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.99□□□□□ -1.61
RNU4ATAC3P-201ENST00000516699 MAP3K1Q13233 1512 aa4.98□□□□□ -1.61
RNU4ATAC3P-201ENST00000516699 ZNF316A6NFI3 1004 aaPredicted RBP4.98□□□□□ -1.61
RNU4ATAC3P-201ENST00000516699 KIF27Q86VH2 1401 aa4.97□□□□□ -1.61
RNU4ATAC3P-201ENST00000516699 NCAPD3P42695 1498 aa4.97□□□□□ -1.61
RNU4ATAC3P-201ENST00000516699 PRXQ9BXM0 1461 aa4.97□□□□□ -1.61
RNU4ATAC3P-201ENST00000516699 SCAF1Q9H7N4 1312 aaKnown RBP4.97□□□□□ -1.61
RNU4ATAC3P-201ENST00000516699 CUX2O14529 1486 aa4.96□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 EHMT2Q96KQ7 1210 aa4.96□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 RAPGEF2Q9Y4G8 1499 aa4.95□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 RUSC2Q8N2Y8 1516 aa4.95□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 CFTRP13569 1480 aa4.94□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 CFAP43Q8NDM7 1665 aa4.94□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 FHAD1B1AJZ9 1412 aa4.94□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 RRBP1Q9P2E9 1410 aaKnown RBP4.94□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 KIF21AQ7Z4S6 1674 aa4.93□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 CC2D2AQ9P2K1 1620 aa4.93□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 CUL7Q14999 1698 aa4.92□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 EFCAB5A4FU69 1503 aa4.92□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 ARAP1Q96P48 1450 aa4.92□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 CUX1P39880 1505 aa4.92□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 TIAM1Q13009 1591 aa4.91□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 CTTNBP2Q8WZ74 1663 aa4.91□□□□□ -1.62
RNU4ATAC3P-201ENST00000516699 NEUROD1Q13562 356 aa4.9□□□□□ -1.63
RNU4ATAC3P-201ENST00000516699 GTF3C3Q9Y5Q9 886 aa4.9□□□□□ -1.63
RNU4ATAC3P-201ENST00000516699 THOC2Q8NI27 1593 aaKnown RBP4.9□□□□□ -1.63
RNU4ATAC3P-201ENST00000516699 CCNB3Q8WWL7 1395 aa4.9□□□□□ -1.63
RNU4ATAC3P-201ENST00000516699 PABPN1Q86U42 306 aaKnown RBP eCLIP4.89□□□□□ -1.63
RNU4ATAC3P-201ENST00000516699 AQRO60306 1485 aaKnown RBP eCLIP4.88□□□□□ -1.63
RNU4ATAC3P-201ENST00000516699 FYCO1Q9BQS8 1478 aa4.88□□□□□ -1.63
RNU4ATAC3P-201ENST00000516699 POTEDQ86YR6 584 aa4.88□□□□□ -1.63
RNU4ATAC3P-201ENST00000516699 TIMELESSQ9UNS1 1208 aa4.88□□□□□ -1.63
RNU4ATAC3P-201ENST00000516699 DHX57Q6P158 1386 aaKnown RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms