RNA–Protein interactions for RNA: ENST00000512531.1

MSH3-203, Transcript of mutS homolog 3, humanhuman

TSL 5

Gene MSH3, Length 531 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-203ENST00000512531 CHIC1Q5VXU3 224 aa23.96■■□□□ 1.43
MSH3-203ENST00000512531 AEBP2Q6ZN18 517 aaPredicted RBP23.84■■□□□ 1.41
MSH3-203ENST00000512531 NISCHQ9Y2I1 1504 aa21.98■■□□□ 1.11
MSH3-203ENST00000512531 PHF23Q9BUL5 403 aaPredicted RBP21.35■■□□□ 1.01
MSH3-203ENST00000512531 ABCC9O60706 1549 aa19.85■□□□□ 0.77
MSH3-203ENST00000512531 CCDC180Q9P1Z9 1646 aa19.82■□□□□ 0.76
MSH3-203ENST00000512531 SENP3Q9H4L4 574 aaPredicted RBP19.77■□□□□ 0.76
MSH3-203ENST00000512531 PLPPR3Q6T4P5 718 aa19.72■□□□□ 0.75
MSH3-203ENST00000512531 RB1CC1Q8TDY2 1594 aa18.93■□□□□ 0.62
MSH3-203ENST00000512531 NACADO15069 1562 aa18.8■□□□□ 0.6
MSH3-203ENST00000512531 DNAJC5BQ9UF47 199 aa18.77■□□□□ 0.6
MSH3-203ENST00000512531 ADRA2BP18089 450 aa18.74■□□□□ 0.59
MSH3-203ENST00000512531 MYO15BQ96JP2 1530 aa18.57■□□□□ 0.56
MSH3-203ENST00000512531 PPP6R1Q9UPN7 881 aa18.56■□□□□ 0.56
MSH3-203ENST00000512531 DCAF8L2P0C7V8 631 aa18.48■□□□□ 0.55
MSH3-203ENST00000512531 FOXD1Q16676 465 aa18.45■□□□□ 0.54
MSH3-203ENST00000512531 PABPN1Q86U42 306 aaKnown RBP eCLIP18.44■□□□□ 0.54
MSH3-203ENST00000512531 UNC13AQ9UPW8 1703 aa18.4■□□□□ 0.54
MSH3-203ENST00000512531 BICRAQ9NZM4 1560 aa18.34■□□□□ 0.53
MSH3-203ENST00000512531 KCNA4P22459 653 aa18.29■□□□□ 0.52
MSH3-203ENST00000512531 SHROOM4Q9ULL8 1493 aa18.25■□□□□ 0.51
MSH3-203ENST00000512531 DCAF1Q9Y4B6 1507 aa18.24■□□□□ 0.51
MSH3-203ENST00000512531 ZCCHC6Q5VYS8 1495 aaKnown RBP18.19■□□□□ 0.5
MSH3-203ENST00000512531 EHMT2Q96KQ7 1210 aa18.03■□□□□ 0.48
MSH3-203ENST00000512531 CC2D2AQ9P2K1 1620 aa17.97■□□□□ 0.47
MSH3-203ENST00000512531 CECR2Q9BXF3 1484 aa17.95■□□□□ 0.46
MSH3-203ENST00000512531 SCRIBQ14160 1630 aa17.91■□□□□ 0.46
MSH3-203ENST00000512531 EIF4G1Q04637 1599 aaKnown RBP17.91■□□□□ 0.46
MSH3-203ENST00000512531 PPP4R3CPQ6ZMV5 832 aa17.59■□□□□ 0.41
MSH3-203ENST00000512531 CSRNP3Q8WYN3 585 aa17.5■□□□□ 0.39
MSH3-203ENST00000512531 PIAS4Q8N2W9 510 aaPredicted RBP17.48■□□□□ 0.39
MSH3-203ENST00000512531 SLC4A1APQ9BWU0 796 aaKnown RBP17.44■□□□□ 0.38
MSH3-203ENST00000512531 DNAJC5Q9H3Z4 198 aa17.44■□□□□ 0.38
MSH3-203ENST00000512531 NCAPD3P42695 1498 aa17.37■□□□□ 0.37
MSH3-203ENST00000512531 CUX2O14529 1486 aa17.3■□□□□ 0.36
MSH3-203ENST00000512531 ATAD2BQ9ULI0 1458 aa17.24■□□□□ 0.35
MSH3-203ENST00000512531 SMARCA2P51531 1590 aa17.21■□□□□ 0.35
MSH3-203ENST00000512531 HMGXB3Q12766 1538 aa17.21■□□□□ 0.34
MSH3-203ENST00000512531 NPM3O75607 178 aaKnown RBP17.19■□□□□ 0.34
MSH3-203ENST00000512531 ERCC6Q03468 1493 aa17.18■□□□□ 0.34
MSH3-203ENST00000512531 NCBP3Q53F19 620 aaKnown RBP17.17■□□□□ 0.34
MSH3-203ENST00000512531 SMARCA4P51532 1647 aa17.15■□□□□ 0.34
MSH3-203ENST00000512531 BAZ1AQ9NRL2 1556 aaPredicted RBP17.09■□□□□ 0.33
MSH3-203ENST00000512531 PEG3Q9GZU2 1588 aa17.06■□□□□ 0.32
MSH3-203ENST00000512531 BAZ1BQ9UIG0 1483 aaKnown RBP17.04■□□□□ 0.32
MSH3-203ENST00000512531 NESP48681 1621 aa16.99■□□□□ 0.31
MSH3-203ENST00000512531 ZBTB22O15209 634 aa16.98■□□□□ 0.31
MSH3-203ENST00000512531 LAMC3Q9Y6N6 1575 aa16.97■□□□□ 0.31
MSH3-203ENST00000512531 THOC2Q8NI27 1593 aaKnown RBP16.91■□□□□ 0.3
MSH3-203ENST00000512531 PDS5BQ9NTI5 1447 aa16.89■□□□□ 0.29
MSH3-203ENST00000512531 MROH2BQ7Z745 1585 aa16.88■□□□□ 0.29
MSH3-203ENST00000512531 CNKSR2Q8WXI2 1034 aa16.81■□□□□ 0.28
MSH3-203ENST00000512531 CADPSQ9ULU8 1353 aa16.8■□□□□ 0.28
MSH3-203ENST00000512531 KIF21AQ7Z4S6 1674 aa16.78■□□□□ 0.28
MSH3-203ENST00000512531 MRC2Q9UBG0 1479 aa16.71■□□□□ 0.27
MSH3-203ENST00000512531 WDR62O43379 1518 aa16.69■□□□□ 0.26
MSH3-203ENST00000512531 WIZO95785 1651 aa16.63■□□□□ 0.25
MSH3-203ENST00000512531 CEP164Q9UPV0 1460 aa16.61■□□□□ 0.25
MSH3-203ENST00000512531 MAPK8IP2Q13387 824 aaPredicted RBP16.59■□□□□ 0.25
MSH3-203ENST00000512531 CFTRP13569 1480 aa16.58■□□□□ 0.24
MSH3-203ENST00000512531 FANCD2Q9BXW9 1451 aa16.57■□□□□ 0.24
MSH3-203ENST00000512531 SCAF1Q9H7N4 1312 aaKnown RBP16.57■□□□□ 0.24
MSH3-203ENST00000512531 RSF1Q96T23 1441 aaPredicted RBP16.52■□□□□ 0.23
MSH3-203ENST00000512531 TOP2AP11388 1531 aaKnown RBP16.49■□□□□ 0.23
MSH3-203ENST00000512531 TRIM41Q8WV44 630 aa16.47■□□□□ 0.23
MSH3-203ENST00000512531 OSCARQ8IYS5 282 aa16.46■□□□□ 0.23
MSH3-203ENST00000512531 FOXD4L1Q9NU39 408 aa16.43■□□□□ 0.22
MSH3-203ENST00000512531 URB2Q14146 1524 aaKnown RBP16.42■□□□□ 0.22
MSH3-203ENST00000512531 MSH5O43196 834 aa16.41■□□□□ 0.22
MSH3-203ENST00000512531 PRDM2Q13029 1718 aa16.35■□□□□ 0.21
MSH3-203ENST00000512531 IFT140Q96RY7 1462 aa16.32■□□□□ 0.2
MSH3-203ENST00000512531 ABCC8Q09428 1581 aa16.29■□□□□ 0.2
MSH3-203ENST00000512531 CCDC88BA6NC98 1476 aa16.29■□□□□ 0.2
MSH3-203ENST00000512531 RNF216Q9NWF9 866 aaPredicted RBP16.28■□□□□ 0.2
MSH3-203ENST00000512531 TOPBP1Q92547 1522 aa16.24■□□□□ 0.19
MSH3-203ENST00000512531 ZNF608Q9ULD9 1512 aaPredicted RBP16.22■□□□□ 0.19
MSH3-203ENST00000512531 SUPT5HO00267 1087 aaKnown RBP16.2■□□□□ 0.18
MSH3-203ENST00000512531 RIMBP3CA6NJZ7 1639 aa16.19■□□□□ 0.18
MSH3-203ENST00000512531 RIMBP3BA6NNM3 1639 aa16.19■□□□□ 0.18
MSH3-203ENST00000512531 RIMBP3Q9UFD9 1639 aa16.19■□□□□ 0.18
MSH3-203ENST00000512531 DNMBPQ6XZF7 1577 aa16.17■□□□□ 0.18
MSH3-203ENST00000512531 ARHGEF11O15085 1522 aa16.15■□□□□ 0.18
MSH3-203ENST00000512531 EIF4G3O43432 1585 aaKnown RBP16.13■□□□□ 0.17
MSH3-203ENST00000512531 TARBP1Q13395 1621 aaKnown RBP16.1■□□□□ 0.17
MSH3-203ENST00000512531 SLC4A2P04920 1241 aa16.1■□□□□ 0.17
MSH3-203ENST00000512531 AQRO60306 1485 aaKnown RBP eCLIP16.06■□□□□ 0.16
MSH3-203ENST00000512531 POLA1P09884 1462 aaPredicted RBP16.06■□□□□ 0.16
MSH3-203ENST00000512531 HOXD11P31277 338 aaPredicted RBP16.05■□□□□ 0.16
MSH3-203ENST00000512531 WDR97A6NE52 1622 aa16.03■□□□□ 0.16
MSH3-203ENST00000512531 DMRT2Q9Y5R5 561 aa16.02■□□□□ 0.16
MSH3-203ENST00000512531 CYB5RLQ6IPT4 315 aa16.01■□□□□ 0.15
MSH3-203ENST00000512531 CHD1O14646 1710 aa16.01■□□□□ 0.15
MSH3-203ENST00000512531 SOGA1O94964 1423 aa15.99■□□□□ 0.15
MSH3-203ENST00000512531 ARAP1Q96P48 1450 aa15.97■□□□□ 0.15
MSH3-203ENST00000512531 RAD54L2Q9Y4B4 1467 aa15.96■□□□□ 0.14
MSH3-203ENST00000512531 FBLN2P98095 1184 aa15.95■□□□□ 0.14
MSH3-203ENST00000512531 TDRD9Q8NDG6 1382 aaKnown RBP15.94■□□□□ 0.14
MSH3-203ENST00000512531 MAGI1Q96QZ7 1491 aaPredicted RBP15.93■□□□□ 0.14
MSH3-203ENST00000512531 RTN4Q9NQC3 1192 aaKnown RBP15.93■□□□□ 0.14
MSH3-203ENST00000512531 FGD5Q6ZNL6 1462 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms