RNA–Protein interactions for RNA: ENST00000505615.1

VCAN-206, Transcript of versican, humanhuman

TSL 5

Gene VCAN, Length 810 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-206ENST00000505615 AEBP2Q6ZN18 517 aaPredicted RBP24.98■■□□□ 1.59
VCAN-206ENST00000505615 CHIC1Q5VXU3 224 aa23.51■■□□□ 1.35
VCAN-206ENST00000505615 SENP3Q9H4L4 574 aaPredicted RBP21.31■■□□□ 1
VCAN-206ENST00000505615 PHF23Q9BUL5 403 aaPredicted RBP20.98■□□□□ 0.95
VCAN-206ENST00000505615 FOXD1Q16676 465 aa19.89■□□□□ 0.77
VCAN-206ENST00000505615 MSH5O43196 834 aa18.67■□□□□ 0.58
VCAN-206ENST00000505615 PLPPR3Q6T4P5 718 aa18.67■□□□□ 0.58
VCAN-206ENST00000505615 POTEDQ86YR6 584 aa18.57■□□□□ 0.56
VCAN-206ENST00000505615 PIAS4Q8N2W9 510 aaPredicted RBP18.5■□□□□ 0.55
VCAN-206ENST00000505615 PPP6R1Q9UPN7 881 aa18.45■□□□□ 0.54
VCAN-206ENST00000505615 NISCHQ9Y2I1 1504 aa18.39■□□□□ 0.53
VCAN-206ENST00000505615 ADRA2BP18089 450 aa18.34■□□□□ 0.53
VCAN-206ENST00000505615 ABCC9O60706 1549 aa17.15■□□□□ 0.34
VCAN-206ENST00000505615 MAPK8IP2Q13387 824 aaPredicted RBP16.9■□□□□ 0.3
VCAN-206ENST00000505615 DMRT2Q9Y5R5 561 aa16.89■□□□□ 0.29
VCAN-206ENST00000505615 CCDC180Q9P1Z9 1646 aa16.75■□□□□ 0.27
VCAN-206ENST00000505615 SCAF1Q9H7N4 1312 aaKnown RBP16.74■□□□□ 0.27
VCAN-206ENST00000505615 DNAJC5BQ9UF47 199 aa16.53■□□□□ 0.24
VCAN-206ENST00000505615 PPP4R3CPQ6ZMV5 832 aa16.33■□□□□ 0.2
VCAN-206ENST00000505615 HOXD11P31277 338 aaPredicted RBP16.21■□□□□ 0.19
VCAN-206ENST00000505615 RB1CC1Q8TDY2 1594 aa16.13■□□□□ 0.17
VCAN-206ENST00000505615 CACNB1Q02641 598 aaPredicted RBP16.08■□□□□ 0.16
VCAN-206ENST00000505615 CNKSR2Q8WXI2 1034 aa16.08■□□□□ 0.16
VCAN-206ENST00000505615 DCAF8L1A6NGE4 600 aa16.06■□□□□ 0.16
VCAN-206ENST00000505615 RNF216Q9NWF9 866 aaPredicted RBP16.01■□□□□ 0.15
VCAN-206ENST00000505615 RNF39Q9H2S5 420 aa15.95■□□□□ 0.14
VCAN-206ENST00000505615 NACADO15069 1562 aa15.91■□□□□ 0.14
VCAN-206ENST00000505615 UNC13AQ9UPW8 1703 aa15.88■□□□□ 0.13
VCAN-206ENST00000505615 PABPN1Q86U42 306 aaKnown RBP eCLIP15.84■□□□□ 0.13
VCAN-206ENST00000505615 BICRAQ9NZM4 1560 aa15.75■□□□□ 0.11
VCAN-206ENST00000505615 C1QBPQ07021 282 aaKnown RBP15.68■□□□□ 0.1
VCAN-206ENST00000505615 NCBP3Q53F19 620 aaKnown RBP15.6■□□□□ 0.09
VCAN-206ENST00000505615 MYO15BQ96JP2 1530 aa15.55■□□□□ 0.08
VCAN-206ENST00000505615 DCAF8L2P0C7V8 631 aa15.54■□□□□ 0.08
VCAN-206ENST00000505615 CC2D2AQ9P2K1 1620 aa15.51■□□□□ 0.07
VCAN-206ENST00000505615 CECR2Q9BXF3 1484 aa15.5■□□□□ 0.07
VCAN-206ENST00000505615 DNAJC5Q9H3Z4 198 aa15.49■□□□□ 0.07
VCAN-206ENST00000505615 NPM3O75607 178 aaKnown RBP15.45■□□□□ 0.06
VCAN-206ENST00000505615 SHROOM4Q9ULL8 1493 aa15.44■□□□□ 0.06
VCAN-206ENST00000505615 EIF4G1Q04637 1599 aaKnown RBP15.36■□□□□ 0.05
VCAN-206ENST00000505615 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.32■□□□□ 0.04
VCAN-206ENST00000505615 SCRIBQ14160 1630 aa15.2■□□□□ 0.02
VCAN-206ENST00000505615 DCAF1Q9Y4B6 1507 aa15.17■□□□□ 0.02
VCAN-206ENST00000505615 ZCCHC6Q5VYS8 1495 aaKnown RBP15.16■□□□□ 0.02
VCAN-206ENST00000505615 U3KPZ7 1027 aaPredicted RBP15.08■□□□□ 0
VCAN-206ENST00000505615 CUX2O14529 1486 aa15□□□□□ -0.01
VCAN-206ENST00000505615 KCNA4P22459 653 aa14.96□□□□□ -0.01
VCAN-206ENST00000505615 SPINK5Q9NQ38 1064 aaPredicted RBP14.89□□□□□ -0.03
VCAN-206ENST00000505615 DSG3P32926 999 aa14.85□□□□□ -0.03
VCAN-206ENST00000505615 SLC4A2P04920 1241 aa14.83□□□□□ -0.04
VCAN-206ENST00000505615 CAPN15O75808 1086 aa14.8□□□□□ -0.04
VCAN-206ENST00000505615 ERCC6Q03468 1493 aa14.8□□□□□ -0.04
VCAN-206ENST00000505615 NCAPD3P42695 1498 aa14.68□□□□□ -0.06
VCAN-206ENST00000505615 THOC2Q8NI27 1593 aaKnown RBP14.63□□□□□ -0.07
VCAN-206ENST00000505615 NESP48681 1621 aa14.63□□□□□ -0.07
VCAN-206ENST00000505615 ATAD2BQ9ULI0 1458 aa14.58□□□□□ -0.08
VCAN-206ENST00000505615 HMGXB3Q12766 1538 aa14.56□□□□□ -0.08
VCAN-206ENST00000505615 APLP2Q06481 763 aa14.56□□□□□ -0.08
VCAN-206ENST00000505615 TRIM41Q8WV44 630 aa14.55□□□□□ -0.08
VCAN-206ENST00000505615 ZNF219Q9P2Y4 722 aaPredicted RBP14.55□□□□□ -0.08
VCAN-206ENST00000505615 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.52□□□□□ -0.09
VCAN-206ENST00000505615 TRHP20396 242 aaPredicted RBP14.52□□□□□ -0.09
VCAN-206ENST00000505615 HNRNPUL2Q1KMD3 747 aaKnown RBP14.52□□□□□ -0.09
VCAN-206ENST00000505615 SMARCA2P51531 1590 aa14.5□□□□□ -0.09
VCAN-206ENST00000505615 POTEHQ6S545 545 aa14.49□□□□□ -0.09
VCAN-206ENST00000505615 ABCB7O75027 752 aa14.47□□□□□ -0.09
VCAN-206ENST00000505615 SMARCA4P51532 1647 aa14.47□□□□□ -0.09
VCAN-206ENST00000505615 KIF21AQ7Z4S6 1674 aa14.46□□□□□ -0.09
VCAN-206ENST00000505615 SAMD1Q6SPF0 538 aaPredicted RBP14.44□□□□□ -0.1
VCAN-206ENST00000505615 LAMC3Q9Y6N6 1575 aa14.43□□□□□ -0.1
VCAN-206ENST00000505615 BAZ1BQ9UIG0 1483 aaKnown RBP14.38□□□□□ -0.11
VCAN-206ENST00000505615 PEG3Q9GZU2 1588 aa14.34□□□□□ -0.11
VCAN-206ENST00000505615 PDS5BQ9NTI5 1447 aa14.31□□□□□ -0.12
VCAN-206ENST00000505615 BAZ1AQ9NRL2 1556 aaPredicted RBP14.3□□□□□ -0.12
VCAN-206ENST00000505615 MYCNP04198 464 aaPredicted RBP14.29□□□□□ -0.12
VCAN-206ENST00000505615 WDR62O43379 1518 aa14.28□□□□□ -0.12
VCAN-206ENST00000505615 MRC2Q9UBG0 1479 aa14.26□□□□□ -0.13
VCAN-206ENST00000505615 CADPSQ9ULU8 1353 aa14.18□□□□□ -0.14
VCAN-206ENST00000505615 MROH2BQ7Z745 1585 aa14.17□□□□□ -0.14
VCAN-206ENST00000505615 RBM42Q9BTD8 480 aaKnown RBP14.15□□□□□ -0.14
VCAN-206ENST00000505615 RIMBP3CA6NJZ7 1639 aa14.13□□□□□ -0.15
VCAN-206ENST00000505615 RIMBP3BA6NNM3 1639 aa14.13□□□□□ -0.15
VCAN-206ENST00000505615 RIMBP3Q9UFD9 1639 aa14.13□□□□□ -0.15
VCAN-206ENST00000505615 OSCARQ8IYS5 282 aa14.13□□□□□ -0.15
VCAN-206ENST00000505615 POLA2Q14181 598 aa14.12□□□□□ -0.15
VCAN-206ENST00000505615 CEP164Q9UPV0 1460 aa14.1□□□□□ -0.15
VCAN-206ENST00000505615 SLC4A1APQ9BWU0 796 aaKnown RBP14.05□□□□□ -0.16
VCAN-206ENST00000505615 FANCD2Q9BXW9 1451 aa14.04□□□□□ -0.16
VCAN-206ENST00000505615 ARHGEF11O15085 1522 aa14.02□□□□□ -0.16
VCAN-206ENST00000505615 FOXD4L1Q9NU39 408 aa14.02□□□□□ -0.17
VCAN-206ENST00000505615 URB2Q14146 1524 aaKnown RBP14□□□□□ -0.17
VCAN-206ENST00000505615 WIZO95785 1651 aa13.98□□□□□ -0.17
VCAN-206ENST00000505615 ATF5Q9Y2D1 282 aaPredicted RBP13.98□□□□□ -0.17
VCAN-206ENST00000505615 CFTRP13569 1480 aa13.95□□□□□ -0.18
VCAN-206ENST00000505615 CHRDL2Q6WN34 429 aa13.92□□□□□ -0.18
VCAN-206ENST00000505615 ZNF608Q9ULD9 1512 aaPredicted RBP13.9□□□□□ -0.19
VCAN-206ENST00000505615 PRDM2Q13029 1718 aa13.87□□□□□ -0.19
VCAN-206ENST00000505615 ARAP1Q96P48 1450 aa13.87□□□□□ -0.19
VCAN-206ENST00000505615 CYB5RLQ6IPT4 315 aa13.84□□□□□ -0.19
VCAN-206ENST00000505615 ZBTB12Q9Y330 459 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms