RNA–Protein interactions for RNA: ENST00000505453.1

PDE4D-212, Transcript of phosphodiesterase 4D, humanhuman

TSL 5

Gene PDE4D, Length 1,430 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDE4D-212ENST00000505453 AEBP2Q6ZN18 517 aaPredicted RBP28.59■■■□□ 2.17
PDE4D-212ENST00000505453 CHIC1Q5VXU3 224 aa27.52■■■□□ 2
PDE4D-212ENST00000505453 SENP3Q9H4L4 574 aaPredicted RBP24.44■■□□□ 1.5
PDE4D-212ENST00000505453 PHF23Q9BUL5 403 aaPredicted RBP24.11■■□□□ 1.45
PDE4D-212ENST00000505453 NISCHQ9Y2I1 1504 aa23.32■■□□□ 1.32
PDE4D-212ENST00000505453 FOXD1Q16676 465 aa22.66■■□□□ 1.22
PDE4D-212ENST00000505453 PLPPR3Q6T4P5 718 aa22.18■■□□□ 1.14
PDE4D-212ENST00000505453 PPP6R1Q9UPN7 881 aa21.41■■□□□ 1.02
PDE4D-212ENST00000505453 ADRA2BP18089 450 aa21.39■■□□□ 1.02
PDE4D-212ENST00000505453 PIAS4Q8N2W9 510 aaPredicted RBP21.31■■□□□ 1
PDE4D-212ENST00000505453 MSH5O43196 834 aa21.16■□□□□ 0.98
PDE4D-212ENST00000505453 CCDC180Q9P1Z9 1646 aa20.18■□□□□ 0.82
PDE4D-212ENST00000505453 POTEDQ86YR6 584 aa20.02■□□□□ 0.8
PDE4D-212ENST00000505453 SCAF1Q9H7N4 1312 aaKnown RBP19.68■□□□□ 0.74
PDE4D-212ENST00000505453 ZCCHC6Q5VYS8 1495 aaKnown RBP19.57■□□□□ 0.72
PDE4D-212ENST00000505453 MAPK8IP2Q13387 824 aaPredicted RBP19.53■□□□□ 0.72
PDE4D-212ENST00000505453 PPP4R3CPQ6ZMV5 832 aa19.46■□□□□ 0.71
PDE4D-212ENST00000505453 DCAF8L2P0C7V8 631 aa19.41■□□□□ 0.7
PDE4D-212ENST00000505453 DMRT2Q9Y5R5 561 aa19.4■□□□□ 0.7
PDE4D-212ENST00000505453 ABCC9O60706 1549 aa19.29■□□□□ 0.68
PDE4D-212ENST00000505453 DCAF1Q9Y4B6 1507 aa19.24■□□□□ 0.67
PDE4D-212ENST00000505453 SHROOM4Q9ULL8 1493 aa19.12■□□□□ 0.65
PDE4D-212ENST00000505453 CNKSR2Q8WXI2 1034 aa19.04■□□□□ 0.64
PDE4D-212ENST00000505453 MYO15BQ96JP2 1530 aa19.01■□□□□ 0.63
PDE4D-212ENST00000505453 NACADO15069 1562 aa18.89■□□□□ 0.61
PDE4D-212ENST00000505453 NCBP3Q53F19 620 aaKnown RBP18.89■□□□□ 0.61
PDE4D-212ENST00000505453 KCNA4P22459 653 aa18.82■□□□□ 0.6
PDE4D-212ENST00000505453 HOXD11P31277 338 aaPredicted RBP18.81■□□□□ 0.6
PDE4D-212ENST00000505453 RNF216Q9NWF9 866 aaPredicted RBP18.78■□□□□ 0.6
PDE4D-212ENST00000505453 RB1CC1Q8TDY2 1594 aa18.72■□□□□ 0.59
PDE4D-212ENST00000505453 SCRIBQ14160 1630 aa18.66■□□□□ 0.58
PDE4D-212ENST00000505453 DCAF8L1A6NGE4 600 aa18.64■□□□□ 0.57
PDE4D-212ENST00000505453 NPM3O75607 178 aaKnown RBP18.61■□□□□ 0.57
PDE4D-212ENST00000505453 SUPT5HO00267 1087 aaKnown RBP18.42■□□□□ 0.54
PDE4D-212ENST00000505453 PABPN1Q86U42 306 aaKnown RBP eCLIP18.28■□□□□ 0.52
PDE4D-212ENST00000505453 UNC13AQ9UPW8 1703 aa18.19■□□□□ 0.5
PDE4D-212ENST00000505453 BICRAQ9NZM4 1560 aa18.19■□□□□ 0.5
PDE4D-212ENST00000505453 CECR2Q9BXF3 1484 aa18.18■□□□□ 0.5
PDE4D-212ENST00000505453 RSF1Q96T23 1441 aaPredicted RBP18.15■□□□□ 0.5
PDE4D-212ENST00000505453 DNAJC5BQ9UF47 199 aa18.13■□□□□ 0.49
PDE4D-212ENST00000505453 RNF39Q9H2S5 420 aa18.04■□□□□ 0.48
PDE4D-212ENST00000505453 MROH2BQ7Z745 1585 aa18.04■□□□□ 0.48
PDE4D-212ENST00000505453 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.98■□□□□ 0.47
PDE4D-212ENST00000505453 BAZ1AQ9NRL2 1556 aaPredicted RBP17.96■□□□□ 0.47
PDE4D-212ENST00000505453 CACNB1Q02641 598 aaPredicted RBP17.95■□□□□ 0.46
PDE4D-212ENST00000505453 SMARCA4P51532 1647 aa17.87■□□□□ 0.45
PDE4D-212ENST00000505453 SLC4A1APQ9BWU0 796 aaKnown RBP17.86■□□□□ 0.45
PDE4D-212ENST00000505453 C1QBPQ07021 282 aaKnown RBP17.83■□□□□ 0.45
PDE4D-212ENST00000505453 WIZO95785 1651 aa17.82■□□□□ 0.44
PDE4D-212ENST00000505453 ATAD2BQ9ULI0 1458 aa17.66■□□□□ 0.42
PDE4D-212ENST00000505453 TOP2AP11388 1531 aaKnown RBP17.65■□□□□ 0.42
PDE4D-212ENST00000505453 PEG3Q9GZU2 1588 aa17.64■□□□□ 0.42
PDE4D-212ENST00000505453 SLC4A2P04920 1241 aa17.64■□□□□ 0.41
PDE4D-212ENST00000505453 EIF4G1Q04637 1599 aaKnown RBP17.63■□□□□ 0.41
PDE4D-212ENST00000505453 SMARCA2P51531 1590 aa17.58■□□□□ 0.4
PDE4D-212ENST00000505453 U3KPZ7 1027 aaPredicted RBP17.57■□□□□ 0.4
PDE4D-212ENST00000505453 CCDC88BA6NC98 1476 aa17.55■□□□□ 0.4
PDE4D-212ENST00000505453 BAZ1BQ9UIG0 1483 aaKnown RBP17.53■□□□□ 0.4
PDE4D-212ENST00000505453 NCAPD3P42695 1498 aa17.52■□□□□ 0.39
PDE4D-212ENST00000505453 HMGXB3Q12766 1538 aa17.4■□□□□ 0.38
PDE4D-212ENST00000505453 CC2D2AQ9P2K1 1620 aa17.37■□□□□ 0.37
PDE4D-212ENST00000505453 ZBTB22O15209 634 aa17.34■□□□□ 0.37
PDE4D-212ENST00000505453 FOXD4L1Q9NU39 408 aa17.34■□□□□ 0.37
PDE4D-212ENST00000505453 TRIM41Q8WV44 630 aa17.3■□□□□ 0.36
PDE4D-212ENST00000505453 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.29■□□□□ 0.36
PDE4D-212ENST00000505453 HNRNPUL2Q1KMD3 747 aaKnown RBP17.29■□□□□ 0.36
PDE4D-212ENST00000505453 APLP2Q06481 763 aa17.25■□□□□ 0.35
PDE4D-212ENST00000505453 CAPN15O75808 1086 aa17.22■□□□□ 0.35
PDE4D-212ENST00000505453 SPINK5Q9NQ38 1064 aaPredicted RBP17.21■□□□□ 0.34
PDE4D-212ENST00000505453 SAMD1Q6SPF0 538 aaPredicted RBP17.19■□□□□ 0.34
PDE4D-212ENST00000505453 MYCNP04198 464 aaPredicted RBP17.18■□□□□ 0.34
PDE4D-212ENST00000505453 EHMT2Q96KQ7 1210 aa17.16■□□□□ 0.34
PDE4D-212ENST00000505453 ABCC8Q09428 1581 aa17.12■□□□□ 0.33
PDE4D-212ENST00000505453 CFTRP13569 1480 aa17.12■□□□□ 0.33
PDE4D-212ENST00000505453 CSRNP3Q8WYN3 585 aa17.1■□□□□ 0.33
PDE4D-212ENST00000505453 CADPSQ9ULU8 1353 aa17.09■□□□□ 0.33
PDE4D-212ENST00000505453 WRNQ14191 1432 aaPredicted RBP eCLIP17.05■□□□□ 0.32
PDE4D-212ENST00000505453 TRHP20396 242 aaPredicted RBP17.03■□□□□ 0.32
PDE4D-212ENST00000505453 FAM9AQ8IZU1 332 aaPredicted RBP17.03■□□□□ 0.32
PDE4D-212ENST00000505453 ZNF219Q9P2Y4 722 aaPredicted RBP17.03■□□□□ 0.32
PDE4D-212ENST00000505453 DSG3P32926 999 aa17■□□□□ 0.31
PDE4D-212ENST00000505453 LOC105371045A0A1W2PR82 267 aa16.99■□□□□ 0.31
PDE4D-212ENST00000505453 SYNJ1O43426 1573 aa16.93■□□□□ 0.3
PDE4D-212ENST00000505453 NESP48681 1621 aa16.93■□□□□ 0.3
PDE4D-212ENST00000505453 SOGA1O94964 1423 aa16.88■□□□□ 0.29
PDE4D-212ENST00000505453 FANCD2Q9BXW9 1451 aa16.87■□□□□ 0.29
PDE4D-212ENST00000505453 CUX1P39880 1505 aa16.85■□□□□ 0.29
PDE4D-212ENST00000505453 TOP2BQ02880 1626 aa16.83■□□□□ 0.29
PDE4D-212ENST00000505453 ABCB7O75027 752 aa16.83■□□□□ 0.28
PDE4D-212ENST00000505453 LAMC3Q9Y6N6 1575 aa16.83■□□□□ 0.28
PDE4D-212ENST00000505453 RUSC2Q8N2Y8 1516 aa16.82■□□□□ 0.28
PDE4D-212ENST00000505453 PDS5BQ9NTI5 1447 aa16.78■□□□□ 0.28
PDE4D-212ENST00000505453 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
PDE4D-212ENST00000505453 ATF5Q9Y2D1 282 aaPredicted RBP16.78■□□□□ 0.28
PDE4D-212ENST00000505453 EEA1Q15075 1411 aa16.77■□□□□ 0.28
PDE4D-212ENST00000505453 ATXN8OSP0DMR3 200 aa16.76■□□□□ 0.27
PDE4D-212ENST00000505453 PRDM2Q13029 1718 aa16.75■□□□□ 0.27
PDE4D-212ENST00000505453 CEP164Q9UPV0 1460 aa16.73■□□□□ 0.27
PDE4D-212ENST00000505453 FGD5Q6ZNL6 1462 aa16.67■□□□□ 0.26
PDE4D-212ENST00000505453 TOPBP1Q92547 1522 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms