RNA–Protein interactions for RNA: ENST00000504835.1

CDH6-202, Transcript of cadherin 6, humanhuman

TSL 5

Gene CDH6, Length 1,568 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6-202ENST00000504835 AEBP2Q6ZN18 517 aaPredicted RBP28.67■■■□□ 2.18
CDH6-202ENST00000504835 CHIC1Q5VXU3 224 aa26.97■■□□□ 1.91
CDH6-202ENST00000504835 SENP3Q9H4L4 574 aaPredicted RBP24.68■■□□□ 1.54
CDH6-202ENST00000504835 PHF23Q9BUL5 403 aaPredicted RBP24.24■■□□□ 1.47
CDH6-202ENST00000504835 FOXD1Q16676 465 aa22.95■■□□□ 1.26
CDH6-202ENST00000504835 POTEDQ86YR6 584 aa21.78■■□□□ 1.08
CDH6-202ENST00000504835 MSH5O43196 834 aa21.75■■□□□ 1.07
CDH6-202ENST00000504835 NISCHQ9Y2I1 1504 aa21.69■■□□□ 1.06
CDH6-202ENST00000504835 PLPPR3Q6T4P5 718 aa21.42■■□□□ 1.02
CDH6-202ENST00000504835 PIAS4Q8N2W9 510 aaPredicted RBP21.41■■□□□ 1.02
CDH6-202ENST00000504835 PPP6R1Q9UPN7 881 aa21.1■□□□□ 0.97
CDH6-202ENST00000504835 ADRA2BP18089 450 aa21.04■□□□□ 0.96
CDH6-202ENST00000504835 ABCC9O60706 1549 aa19.59■□□□□ 0.73
CDH6-202ENST00000504835 CCDC180Q9P1Z9 1646 aa19.56■□□□□ 0.72
CDH6-202ENST00000504835 DMRT2Q9Y5R5 561 aa19.47■□□□□ 0.71
CDH6-202ENST00000504835 SCAF1Q9H7N4 1312 aaKnown RBP19.44■□□□□ 0.7
CDH6-202ENST00000504835 MAPK8IP2Q13387 824 aaPredicted RBP19.41■□□□□ 0.7
CDH6-202ENST00000504835 CACNB1Q02641 598 aaPredicted RBP18.87■□□□□ 0.61
CDH6-202ENST00000504835 DCAF8L1A6NGE4 600 aa18.72■□□□□ 0.59
CDH6-202ENST00000504835 PPP4R3CPQ6ZMV5 832 aa18.67■□□□□ 0.58
CDH6-202ENST00000504835 RB1CC1Q8TDY2 1594 aa18.61■□□□□ 0.57
CDH6-202ENST00000504835 HOXD11P31277 338 aaPredicted RBP18.59■□□□□ 0.57
CDH6-202ENST00000504835 DNAJC5BQ9UF47 199 aa18.49■□□□□ 0.55
CDH6-202ENST00000504835 NACADO15069 1562 aa18.45■□□□□ 0.54
CDH6-202ENST00000504835 CNKSR2Q8WXI2 1034 aa18.45■□□□□ 0.54
CDH6-202ENST00000504835 RNF39Q9H2S5 420 aa18.45■□□□□ 0.54
CDH6-202ENST00000504835 RNF216Q9NWF9 866 aaPredicted RBP18.38■□□□□ 0.53
CDH6-202ENST00000504835 UNC13AQ9UPW8 1703 aa18.37■□□□□ 0.53
CDH6-202ENST00000504835 C1QBPQ07021 282 aaKnown RBP18.22■□□□□ 0.51
CDH6-202ENST00000504835 DCAF8L2P0C7V8 631 aa18.21■□□□□ 0.51
CDH6-202ENST00000504835 PABPN1Q86U42 306 aaKnown RBP eCLIP18.18■□□□□ 0.5
CDH6-202ENST00000504835 MYO15BQ96JP2 1530 aa18.16■□□□□ 0.5
CDH6-202ENST00000504835 BICRAQ9NZM4 1560 aa18.15■□□□□ 0.5
CDH6-202ENST00000504835 ZCCHC6Q5VYS8 1495 aaKnown RBP17.96■□□□□ 0.47
CDH6-202ENST00000504835 NCBP3Q53F19 620 aaKnown RBP17.94■□□□□ 0.46
CDH6-202ENST00000504835 DCAF1Q9Y4B6 1507 aa17.9■□□□□ 0.46
CDH6-202ENST00000504835 SCRIBQ14160 1630 aa17.8■□□□□ 0.44
CDH6-202ENST00000504835 SHROOM4Q9ULL8 1493 aa17.79■□□□□ 0.44
CDH6-202ENST00000504835 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.77■□□□□ 0.44
CDH6-202ENST00000504835 CC2D2AQ9P2K1 1620 aa17.75■□□□□ 0.43
CDH6-202ENST00000504835 EIF4G1Q04637 1599 aaKnown RBP17.67■□□□□ 0.42
CDH6-202ENST00000504835 CECR2Q9BXF3 1484 aa17.64■□□□□ 0.41
CDH6-202ENST00000504835 NPM3O75607 178 aaKnown RBP17.55■□□□□ 0.4
CDH6-202ENST00000504835 U3KPZ7 1027 aaPredicted RBP17.28■□□□□ 0.36
CDH6-202ENST00000504835 CAPN15O75808 1086 aa17.19■□□□□ 0.34
CDH6-202ENST00000504835 DSG3P32926 999 aa17.13■□□□□ 0.33
CDH6-202ENST00000504835 SPINK5Q9NQ38 1064 aaPredicted RBP17.11■□□□□ 0.33
CDH6-202ENST00000504835 POTEHQ6S545 545 aa17.02■□□□□ 0.32
CDH6-202ENST00000504835 NCAPD3P42695 1498 aa17.02■□□□□ 0.31
CDH6-202ENST00000504835 DNAJC5Q9H3Z4 198 aa16.99■□□□□ 0.31
CDH6-202ENST00000504835 SMARCA4P51532 1647 aa16.98■□□□□ 0.31
CDH6-202ENST00000504835 ATAD2BQ9ULI0 1458 aa16.97■□□□□ 0.31
CDH6-202ENST00000504835 APLP2Q06481 763 aa16.94■□□□□ 0.3
CDH6-202ENST00000504835 HMGXB3Q12766 1538 aa16.91■□□□□ 0.3
CDH6-202ENST00000504835 CUX2O14529 1486 aa16.91■□□□□ 0.3
CDH6-202ENST00000504835 SMARCA2P51531 1590 aa16.9■□□□□ 0.3
CDH6-202ENST00000504835 ERCC6Q03468 1493 aa16.87■□□□□ 0.29
CDH6-202ENST00000504835 KCNA4P22459 653 aa16.85■□□□□ 0.29
CDH6-202ENST00000504835 NESP48681 1621 aa16.84■□□□□ 0.29
CDH6-202ENST00000504835 BAZ1AQ9NRL2 1556 aaPredicted RBP16.82■□□□□ 0.28
CDH6-202ENST00000504835 SLC4A2P04920 1241 aa16.82■□□□□ 0.28
CDH6-202ENST00000504835 ZNF219Q9P2Y4 722 aaPredicted RBP16.82■□□□□ 0.28
CDH6-202ENST00000504835 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.81■□□□□ 0.28
CDH6-202ENST00000504835 TRHP20396 242 aaPredicted RBP16.81■□□□□ 0.28
CDH6-202ENST00000504835 HNRNPUL2Q1KMD3 747 aaKnown RBP16.81■□□□□ 0.28
CDH6-202ENST00000504835 PEG3Q9GZU2 1588 aa16.8■□□□□ 0.28
CDH6-202ENST00000504835 BAZ1BQ9UIG0 1483 aaKnown RBP16.77■□□□□ 0.28
CDH6-202ENST00000504835 THOC2Q8NI27 1593 aaKnown RBP16.74■□□□□ 0.27
CDH6-202ENST00000504835 MROH2BQ7Z745 1585 aa16.73■□□□□ 0.27
CDH6-202ENST00000504835 ABCB7O75027 752 aa16.7■□□□□ 0.26
CDH6-202ENST00000504835 KIF21AQ7Z4S6 1674 aa16.69■□□□□ 0.26
CDH6-202ENST00000504835 LAMC3Q9Y6N6 1575 aa16.68■□□□□ 0.26
CDH6-202ENST00000504835 SAMD1Q6SPF0 538 aaPredicted RBP16.65■□□□□ 0.26
CDH6-202ENST00000504835 WIZO95785 1651 aa16.56■□□□□ 0.24
CDH6-202ENST00000504835 PDS5BQ9NTI5 1447 aa16.51■□□□□ 0.23
CDH6-202ENST00000504835 RBM42Q9BTD8 480 aaKnown RBP16.49■□□□□ 0.23
CDH6-202ENST00000504835 CADPSQ9ULU8 1353 aa16.47■□□□□ 0.23
CDH6-202ENST00000504835 WDR62O43379 1518 aa16.43■□□□□ 0.22
CDH6-202ENST00000504835 MRC2Q9UBG0 1479 aa16.43■□□□□ 0.22
CDH6-202ENST00000504835 CEP164Q9UPV0 1460 aa16.33■□□□□ 0.21
CDH6-202ENST00000504835 MYCNP04198 464 aaPredicted RBP16.32■□□□□ 0.2
CDH6-202ENST00000504835 FANCD2Q9BXW9 1451 aa16.31■□□□□ 0.2
CDH6-202ENST00000504835 RSF1Q96T23 1441 aaPredicted RBP16.3■□□□□ 0.2
CDH6-202ENST00000504835 TOP2AP11388 1531 aaKnown RBP16.29■□□□□ 0.2
CDH6-202ENST00000504835 CFTRP13569 1480 aa16.29■□□□□ 0.2
CDH6-202ENST00000504835 PRDM2Q13029 1718 aa16.27■□□□□ 0.19
CDH6-202ENST00000504835 POLA2Q14181 598 aa16.26■□□□□ 0.19
CDH6-202ENST00000504835 URB2Q14146 1524 aaKnown RBP16.23■□□□□ 0.19
CDH6-202ENST00000504835 CHRDL2Q6WN34 429 aa16.2■□□□□ 0.18
CDH6-202ENST00000504835 TRIM41Q8WV44 630 aa16.17■□□□□ 0.18
CDH6-202ENST00000504835 CCDC88BA6NC98 1476 aa16.09■□□□□ 0.17
CDH6-202ENST00000504835 OSCARQ8IYS5 282 aa16.04■□□□□ 0.16
CDH6-202ENST00000504835 ZNF608Q9ULD9 1512 aaPredicted RBP16.04■□□□□ 0.16
CDH6-202ENST00000504835 TOPBP1Q92547 1522 aa16.01■□□□□ 0.15
CDH6-202ENST00000504835 ZBTB12Q9Y330 459 aaPredicted RBP16.01■□□□□ 0.15
CDH6-202ENST00000504835 RIMBP3CA6NJZ7 1639 aa16.01■□□□□ 0.15
CDH6-202ENST00000504835 RIMBP3BA6NNM3 1639 aa16.01■□□□□ 0.15
CDH6-202ENST00000504835 RIMBP3Q9UFD9 1639 aa16.01■□□□□ 0.15
CDH6-202ENST00000504835 IFT140Q96RY7 1462 aa16■□□□□ 0.15
CDH6-202ENST00000504835 EIF4G3O43432 1585 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms