RNA–Protein interactions for RNA: ENST00000503402.1

SEMA6A-204, Transcript of semaphorin 6A, humanhuman

TSL 3

Gene SEMA6A, Length 598 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA6A-204ENST00000503402 AEBP2Q6ZN18 517 aaPredicted RBP22.47■■□□□ 1.19
SEMA6A-204ENST00000503402 CHIC1Q5VXU3 224 aa21.51■■□□□ 1.03
SEMA6A-204ENST00000503402 SENP3Q9H4L4 574 aaPredicted RBP19.07■□□□□ 0.64
SEMA6A-204ENST00000503402 PHF23Q9BUL5 403 aaPredicted RBP18.91■□□□□ 0.62
SEMA6A-204ENST00000503402 FOXD1Q16676 465 aa17.78■□□□□ 0.44
SEMA6A-204ENST00000503402 NISCHQ9Y2I1 1504 aa17.51■□□□□ 0.39
SEMA6A-204ENST00000503402 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
SEMA6A-204ENST00000503402 POTEDQ86YR6 584 aa16.85■□□□□ 0.29
SEMA6A-204ENST00000503402 PPP6R1Q9UPN7 881 aa16.81■□□□□ 0.28
SEMA6A-204ENST00000503402 ADRA2BP18089 450 aa16.77■□□□□ 0.28
SEMA6A-204ENST00000503402 PIAS4Q8N2W9 510 aaPredicted RBP16.66■□□□□ 0.26
SEMA6A-204ENST00000503402 MSH5O43196 834 aa16.55■□□□□ 0.24
SEMA6A-204ENST00000503402 ABCC9O60706 1549 aa16.1■□□□□ 0.17
SEMA6A-204ENST00000503402 CCDC180Q9P1Z9 1646 aa15.8■□□□□ 0.12
SEMA6A-204ENST00000503402 MAPK8IP2Q13387 824 aaPredicted RBP15.33■□□□□ 0.04
SEMA6A-204ENST00000503402 DNAJC5BQ9UF47 199 aa15.27■□□□□ 0.04
SEMA6A-204ENST00000503402 SCAF1Q9H7N4 1312 aaKnown RBP15.25■□□□□ 0.03
SEMA6A-204ENST00000503402 PPP4R3CPQ6ZMV5 832 aa15.19■□□□□ 0.02
SEMA6A-204ENST00000503402 DMRT2Q9Y5R5 561 aa15.18■□□□□ 0.02
SEMA6A-204ENST00000503402 RB1CC1Q8TDY2 1594 aa15.14■□□□□ 0.01
SEMA6A-204ENST00000503402 NACADO15069 1562 aa14.95□□□□□ -0.02
SEMA6A-204ENST00000503402 PABPN1Q86U42 306 aaKnown RBP eCLIP14.95□□□□□ -0.02
SEMA6A-204ENST00000503402 DCAF8L2P0C7V8 631 aa14.91□□□□□ -0.02
SEMA6A-204ENST00000503402 UNC13AQ9UPW8 1703 aa14.88□□□□□ -0.03
SEMA6A-204ENST00000503402 CNKSR2Q8WXI2 1034 aa14.82□□□□□ -0.04
SEMA6A-204ENST00000503402 BICRAQ9NZM4 1560 aa14.77□□□□□ -0.05
SEMA6A-204ENST00000503402 HOXD11P31277 338 aaPredicted RBP14.7□□□□□ -0.06
SEMA6A-204ENST00000503402 RNF216Q9NWF9 866 aaPredicted RBP14.64□□□□□ -0.07
SEMA6A-204ENST00000503402 NCBP3Q53F19 620 aaKnown RBP14.62□□□□□ -0.07
SEMA6A-204ENST00000503402 MYO15BQ96JP2 1530 aa14.61□□□□□ -0.07
SEMA6A-204ENST00000503402 DCAF8L1A6NGE4 600 aa14.53□□□□□ -0.08
SEMA6A-204ENST00000503402 SCRIBQ14160 1630 aa14.5□□□□□ -0.09
SEMA6A-204ENST00000503402 CC2D2AQ9P2K1 1620 aa14.5□□□□□ -0.09
SEMA6A-204ENST00000503402 ZCCHC6Q5VYS8 1495 aaKnown RBP14.49□□□□□ -0.09
SEMA6A-204ENST00000503402 CACNB1Q02641 598 aaPredicted RBP14.48□□□□□ -0.09
SEMA6A-204ENST00000503402 CECR2Q9BXF3 1484 aa14.48□□□□□ -0.09
SEMA6A-204ENST00000503402 NPM3O75607 178 aaKnown RBP14.47□□□□□ -0.09
SEMA6A-204ENST00000503402 KCNA4P22459 653 aa14.42□□□□□ -0.1
SEMA6A-204ENST00000503402 SHROOM4Q9ULL8 1493 aa14.41□□□□□ -0.1
SEMA6A-204ENST00000503402 EIF4G1Q04637 1599 aaKnown RBP14.4□□□□□ -0.1
SEMA6A-204ENST00000503402 DCAF1Q9Y4B6 1507 aa14.37□□□□□ -0.11
SEMA6A-204ENST00000503402 RNF39Q9H2S5 420 aa14.13□□□□□ -0.15
SEMA6A-204ENST00000503402 DNAJC5Q9H3Z4 198 aa14.08□□□□□ -0.16
SEMA6A-204ENST00000503402 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.99□□□□□ -0.17
SEMA6A-204ENST00000503402 C1QBPQ07021 282 aaKnown RBP13.91□□□□□ -0.18
SEMA6A-204ENST00000503402 ERCC6Q03468 1493 aa13.88□□□□□ -0.19
SEMA6A-204ENST00000503402 CUX2O14529 1486 aa13.87□□□□□ -0.19
SEMA6A-204ENST00000503402 NCAPD3P42695 1498 aa13.8□□□□□ -0.2
SEMA6A-204ENST00000503402 NESP48681 1621 aa13.79□□□□□ -0.2
SEMA6A-204ENST00000503402 SLC4A2P04920 1241 aa13.78□□□□□ -0.2
SEMA6A-204ENST00000503402 ATAD2BQ9ULI0 1458 aa13.78□□□□□ -0.2
SEMA6A-204ENST00000503402 U3KPZ7 1027 aaPredicted RBP13.76□□□□□ -0.21
SEMA6A-204ENST00000503402 SMARCA4P51532 1647 aa13.74□□□□□ -0.21
SEMA6A-204ENST00000503402 HMGXB3Q12766 1538 aa13.71□□□□□ -0.21
SEMA6A-204ENST00000503402 SMARCA2P51531 1590 aa13.7□□□□□ -0.22
SEMA6A-204ENST00000503402 THOC2Q8NI27 1593 aaKnown RBP13.66□□□□□ -0.22
SEMA6A-204ENST00000503402 BAZ1BQ9UIG0 1483 aaKnown RBP13.65□□□□□ -0.22
SEMA6A-204ENST00000503402 SLC4A1APQ9BWU0 796 aaKnown RBP13.62□□□□□ -0.23
SEMA6A-204ENST00000503402 KIF21AQ7Z4S6 1674 aa13.59□□□□□ -0.23
SEMA6A-204ENST00000503402 BAZ1AQ9NRL2 1556 aaPredicted RBP13.59□□□□□ -0.23
SEMA6A-204ENST00000503402 MROH2BQ7Z745 1585 aa13.55□□□□□ -0.24
SEMA6A-204ENST00000503402 PEG3Q9GZU2 1588 aa13.54□□□□□ -0.24
SEMA6A-204ENST00000503402 LAMC3Q9Y6N6 1575 aa13.54□□□□□ -0.24
SEMA6A-204ENST00000503402 SPINK5Q9NQ38 1064 aaPredicted RBP13.5□□□□□ -0.25
SEMA6A-204ENST00000503402 TRIM41Q8WV44 630 aa13.49□□□□□ -0.25
SEMA6A-204ENST00000503402 PDS5BQ9NTI5 1447 aa13.45□□□□□ -0.26
SEMA6A-204ENST00000503402 CAPN15O75808 1086 aa13.43□□□□□ -0.26
SEMA6A-204ENST00000503402 MRC2Q9UBG0 1479 aa13.42□□□□□ -0.26
SEMA6A-204ENST00000503402 WIZO95785 1651 aa13.39□□□□□ -0.27
SEMA6A-204ENST00000503402 WDR62O43379 1518 aa13.39□□□□□ -0.27
SEMA6A-204ENST00000503402 CADPSQ9ULU8 1353 aa13.38□□□□□ -0.27
SEMA6A-204ENST00000503402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.37□□□□□ -0.27
SEMA6A-204ENST00000503402 HNRNPUL2Q1KMD3 747 aaKnown RBP13.37□□□□□ -0.27
SEMA6A-204ENST00000503402 MYCNP04198 464 aaPredicted RBP13.36□□□□□ -0.27
SEMA6A-204ENST00000503402 FOXD4L1Q9NU39 408 aa13.35□□□□□ -0.27
SEMA6A-204ENST00000503402 SAMD1Q6SPF0 538 aaPredicted RBP13.33□□□□□ -0.28
SEMA6A-204ENST00000503402 CEP164Q9UPV0 1460 aa13.32□□□□□ -0.28
SEMA6A-204ENST00000503402 DSG3P32926 999 aa13.32□□□□□ -0.28
SEMA6A-204ENST00000503402 APLP2Q06481 763 aa13.31□□□□□ -0.28
SEMA6A-204ENST00000503402 ZBTB22O15209 634 aa13.29□□□□□ -0.28
SEMA6A-204ENST00000503402 FANCD2Q9BXW9 1451 aa13.29□□□□□ -0.28
SEMA6A-204ENST00000503402 TRHP20396 242 aaPredicted RBP13.28□□□□□ -0.28
SEMA6A-204ENST00000503402 ZNF219Q9P2Y4 722 aaPredicted RBP13.23□□□□□ -0.29
SEMA6A-204ENST00000503402 URB2Q14146 1524 aaKnown RBP13.22□□□□□ -0.29
SEMA6A-204ENST00000503402 CFTRP13569 1480 aa13.19□□□□□ -0.3
SEMA6A-204ENST00000503402 ABCB7O75027 752 aa13.17□□□□□ -0.3
SEMA6A-204ENST00000503402 TOP2AP11388 1531 aaKnown RBP13.17□□□□□ -0.3
SEMA6A-204ENST00000503402 OSCARQ8IYS5 282 aa13.16□□□□□ -0.3
SEMA6A-204ENST00000503402 POTEHQ6S545 545 aa13.15□□□□□ -0.3
SEMA6A-204ENST00000503402 RSF1Q96T23 1441 aaPredicted RBP13.14□□□□□ -0.31
SEMA6A-204ENST00000503402 RIMBP3CA6NJZ7 1639 aa13.13□□□□□ -0.31
SEMA6A-204ENST00000503402 RIMBP3BA6NNM3 1639 aa13.13□□□□□ -0.31
SEMA6A-204ENST00000503402 RIMBP3Q9UFD9 1639 aa13.13□□□□□ -0.31
SEMA6A-204ENST00000503402 ZNF608Q9ULD9 1512 aaPredicted RBP13.11□□□□□ -0.31
SEMA6A-204ENST00000503402 PRDM2Q13029 1718 aa13.09□□□□□ -0.31
SEMA6A-204ENST00000503402 ATF5Q9Y2D1 282 aaPredicted RBP13.08□□□□□ -0.32
SEMA6A-204ENST00000503402 ARHGEF11O15085 1522 aa13.05□□□□□ -0.32
SEMA6A-204ENST00000503402 IFT140Q96RY7 1462 aa13.04□□□□□ -0.32
SEMA6A-204ENST00000503402 EIF4G3O43432 1585 aaKnown RBP13.03□□□□□ -0.32
SEMA6A-204ENST00000503402 TOPBP1Q92547 1522 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms