RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 AEBP2Q6ZN18 517 aaPredicted RBP21.16■□□□□ 0.98
SYNE1-231ENST00000498751 CHIC1Q5VXU3 224 aa20.13■□□□□ 0.81
SYNE1-231ENST00000498751 SENP3Q9H4L4 574 aaPredicted RBP17.96■□□□□ 0.47
SYNE1-231ENST00000498751 PHF23Q9BUL5 403 aaPredicted RBP17.76■□□□□ 0.43
SYNE1-231ENST00000498751 NISCHQ9Y2I1 1504 aa17.23■□□□□ 0.35
SYNE1-231ENST00000498751 FOXD1Q16676 465 aa16.77■□□□□ 0.28
SYNE1-231ENST00000498751 PLPPR3Q6T4P5 718 aa16.09■□□□□ 0.17
SYNE1-231ENST00000498751 PPP6R1Q9UPN7 881 aa15.77■□□□□ 0.12
SYNE1-231ENST00000498751 ADRA2BP18089 450 aa15.72■□□□□ 0.11
SYNE1-231ENST00000498751 PIAS4Q8N2W9 510 aaPredicted RBP15.66■□□□□ 0.1
SYNE1-231ENST00000498751 MSH5O43196 834 aa15.59■□□□□ 0.09
SYNE1-231ENST00000498751 POTEDQ86YR6 584 aa15.12■□□□□ 0.01
SYNE1-231ENST00000498751 CCDC180Q9P1Z9 1646 aa15.03■□□□□ -0
SYNE1-231ENST00000498751 ZCCHC6Q5VYS8 1495 aaKnown RBP14.54□□□□□ -0.08
SYNE1-231ENST00000498751 MAPK8IP2Q13387 824 aaPredicted RBP14.42□□□□□ -0.1
SYNE1-231ENST00000498751 DCAF1Q9Y4B6 1507 aa14.41□□□□□ -0.1
SYNE1-231ENST00000498751 DMRT2Q9Y5R5 561 aa14.28□□□□□ -0.12
SYNE1-231ENST00000498751 SCAF1Q9H7N4 1312 aaKnown RBP14.27□□□□□ -0.12
SYNE1-231ENST00000498751 MYO15BQ96JP2 1530 aa14.24□□□□□ -0.13
SYNE1-231ENST00000498751 PPP4R3CPQ6ZMV5 832 aa14.15□□□□□ -0.14
SYNE1-231ENST00000498751 NACADO15069 1562 aa13.95□□□□□ -0.18
SYNE1-231ENST00000498751 CNKSR2Q8WXI2 1034 aa13.83□□□□□ -0.2
SYNE1-231ENST00000498751 SHROOM4Q9ULL8 1493 aa13.81□□□□□ -0.2
SYNE1-231ENST00000498751 ABCC9O60706 1549 aa13.81□□□□□ -0.2
SYNE1-231ENST00000498751 DCAF8L2P0C7V8 631 aa13.79□□□□□ -0.2
SYNE1-231ENST00000498751 HOXD11P31277 338 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-231ENST00000498751 RB1CC1Q8TDY2 1594 aa13.73□□□□□ -0.21
SYNE1-231ENST00000498751 RNF216Q9NWF9 866 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-231ENST00000498751 DCAF8L1A6NGE4 600 aa13.66□□□□□ -0.22
SYNE1-231ENST00000498751 SCRIBQ14160 1630 aa13.61□□□□□ -0.23
SYNE1-231ENST00000498751 NCBP3Q53F19 620 aaKnown RBP13.57□□□□□ -0.24
SYNE1-231ENST00000498751 NPM3O75607 178 aaKnown RBP13.45□□□□□ -0.26
SYNE1-231ENST00000498751 UNC13AQ9UPW8 1703 aa13.39□□□□□ -0.27
SYNE1-231ENST00000498751 SUPT5HO00267 1087 aaKnown RBP13.39□□□□□ -0.27
SYNE1-231ENST00000498751 RSF1Q96T23 1441 aaPredicted RBP13.39□□□□□ -0.27
SYNE1-231ENST00000498751 RNF39Q9H2S5 420 aa13.35□□□□□ -0.27
SYNE1-231ENST00000498751 CACNB1Q02641 598 aaPredicted RBP13.34□□□□□ -0.27
SYNE1-231ENST00000498751 BICRAQ9NZM4 1560 aa13.32□□□□□ -0.28
SYNE1-231ENST00000498751 BAZ1AQ9NRL2 1556 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-231ENST00000498751 KCNA4P22459 653 aa13.29□□□□□ -0.28
SYNE1-231ENST00000498751 CECR2Q9BXF3 1484 aa13.28□□□□□ -0.28
SYNE1-231ENST00000498751 MROH2BQ7Z745 1585 aa13.25□□□□□ -0.29
SYNE1-231ENST00000498751 DNAJC5BQ9UF47 199 aa13.25□□□□□ -0.29
SYNE1-231ENST00000498751 SMARCA4P51532 1647 aa13.19□□□□□ -0.3
SYNE1-231ENST00000498751 PEG3Q9GZU2 1588 aa13.16□□□□□ -0.3
SYNE1-231ENST00000498751 C1QBPQ07021 282 aaKnown RBP13.13□□□□□ -0.31
SYNE1-231ENST00000498751 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.11□□□□□ -0.31
SYNE1-231ENST00000498751 WIZO95785 1651 aa13.11□□□□□ -0.31
SYNE1-231ENST00000498751 TOP2AP11388 1531 aaKnown RBP13.08□□□□□ -0.31
SYNE1-231ENST00000498751 SMARCA2P51531 1590 aa12.98□□□□□ -0.33
SYNE1-231ENST00000498751 PABPN1Q86U42 306 aaKnown RBP eCLIP12.97□□□□□ -0.33
SYNE1-231ENST00000498751 EIF4G1Q04637 1599 aaKnown RBP12.97□□□□□ -0.33
SYNE1-231ENST00000498751 ATAD2BQ9ULI0 1458 aa12.94□□□□□ -0.34
SYNE1-231ENST00000498751 U3KPZ7 1027 aaPredicted RBP12.9□□□□□ -0.34
SYNE1-231ENST00000498751 CCDC88BA6NC98 1476 aa12.89□□□□□ -0.35
SYNE1-231ENST00000498751 HMGXB3Q12766 1538 aa12.88□□□□□ -0.35
SYNE1-231ENST00000498751 NCAPD3P42695 1498 aa12.88□□□□□ -0.35
SYNE1-231ENST00000498751 SLC4A2P04920 1241 aa12.85□□□□□ -0.35
SYNE1-231ENST00000498751 BAZ1BQ9UIG0 1483 aaKnown RBP12.82□□□□□ -0.36
SYNE1-231ENST00000498751 SPINK5Q9NQ38 1064 aaPredicted RBP12.69□□□□□ -0.38
SYNE1-231ENST00000498751 TRIM41Q8WV44 630 aa12.68□□□□□ -0.38
SYNE1-231ENST00000498751 CAPN15O75808 1086 aa12.61□□□□□ -0.39
SYNE1-231ENST00000498751 CFTRP13569 1480 aa12.6□□□□□ -0.39
SYNE1-231ENST00000498751 EEA1Q15075 1411 aa12.6□□□□□ -0.39
SYNE1-231ENST00000498751 CC2D2AQ9P2K1 1620 aa12.59□□□□□ -0.39
SYNE1-231ENST00000498751 WRNQ14191 1432 aaPredicted RBP eCLIP12.58□□□□□ -0.4
SYNE1-231ENST00000498751 ABCC8Q09428 1581 aa12.57□□□□□ -0.4
SYNE1-231ENST00000498751 DSG3P32926 999 aa12.54□□□□□ -0.4
SYNE1-231ENST00000498751 SLC4A1APQ9BWU0 796 aaKnown RBP12.53□□□□□ -0.4
SYNE1-231ENST00000498751 PRDM2Q13029 1718 aa12.53□□□□□ -0.4
SYNE1-231ENST00000498751 TOP2BQ02880 1626 aa12.51□□□□□ -0.41
SYNE1-231ENST00000498751 BIVM-ERCC5R4GMW8 1640 aa12.51□□□□□ -0.41
SYNE1-231ENST00000498751 SYNJ1O43426 1573 aa12.49□□□□□ -0.41
SYNE1-231ENST00000498751 CADPSQ9ULU8 1353 aa12.48□□□□□ -0.41
SYNE1-231ENST00000498751 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.46□□□□□ -0.41
SYNE1-231ENST00000498751 HNRNPUL2Q1KMD3 747 aaKnown RBP12.46□□□□□ -0.41
SYNE1-231ENST00000498751 TRHP20396 242 aaPredicted RBP12.44□□□□□ -0.42
SYNE1-231ENST00000498751 APLP2Q06481 763 aa12.43□□□□□ -0.42
SYNE1-231ENST00000498751 LOC105371045A0A1W2PR82 267 aa12.42□□□□□ -0.42
SYNE1-231ENST00000498751 SAMD1Q6SPF0 538 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-231ENST00000498751 MYCNP04198 464 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-231ENST00000498751 LAMC3Q9Y6N6 1575 aa12.39□□□□□ -0.43
SYNE1-231ENST00000498751 SOGA1O94964 1423 aa12.39□□□□□ -0.43
SYNE1-231ENST00000498751 ZNF219Q9P2Y4 722 aaPredicted RBP12.39□□□□□ -0.43
SYNE1-231ENST00000498751 CUX1P39880 1505 aa12.38□□□□□ -0.43
SYNE1-231ENST00000498751 KIF21BO75037 1637 aa12.37□□□□□ -0.43
SYNE1-231ENST00000498751 ABCB7O75027 752 aa12.36□□□□□ -0.43
SYNE1-231ENST00000498751 CSRNP3Q8WYN3 585 aa12.36□□□□□ -0.43
SYNE1-231ENST00000498751 TNIKQ9UKE5 1360 aa12.34□□□□□ -0.43
SYNE1-231ENST00000498751 FOXD4L1Q9NU39 408 aa12.34□□□□□ -0.43
SYNE1-231ENST00000498751 CEP164Q9UPV0 1460 aa12.33□□□□□ -0.44
SYNE1-231ENST00000498751 RUSC2Q8N2Y8 1516 aa12.32□□□□□ -0.44
SYNE1-231ENST00000498751 GOLGA3Q08378 1498 aa12.32□□□□□ -0.44
SYNE1-231ENST00000498751 FANCD2Q9BXW9 1451 aa12.3□□□□□ -0.44
SYNE1-231ENST00000498751 ERICH3Q5RHP9 1530 aa12.29□□□□□ -0.44
SYNE1-231ENST00000498751 FAM9AQ8IZU1 332 aaPredicted RBP12.28□□□□□ -0.44
SYNE1-231ENST00000498751 PRXQ9BXM0 1461 aa12.27□□□□□ -0.44
SYNE1-231ENST00000498751 DNMBPQ6XZF7 1577 aa12.27□□□□□ -0.44
SYNE1-231ENST00000498751 ZBTB22O15209 634 aa12.26□□□□□ -0.45
SYNE1-231ENST00000498751 KIF27Q86VH2 1401 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms