RNA–Protein interactions for RNA: ENST00000496907.1

HMGCL-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 3

Gene HMGCL, Length 858 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-206ENST00000496907 AEBP2Q6ZN18 517 aaPredicted RBP18.02■□□□□ 0.48
HMGCL-206ENST00000496907 CHIC1Q5VXU3 224 aa16.69■□□□□ 0.26
HMGCL-206ENST00000496907 POTEDQ86YR6 584 aa15.58■□□□□ 0.08
HMGCL-206ENST00000496907 SENP3Q9H4L4 574 aaPredicted RBP15.43■□□□□ 0.06
HMGCL-206ENST00000496907 PHF23Q9BUL5 403 aaPredicted RBP15.14■□□□□ 0.01
HMGCL-206ENST00000496907 FOXD1Q16676 465 aa14.59□□□□□ -0.07
HMGCL-206ENST00000496907 NISCHQ9Y2I1 1504 aa14.23□□□□□ -0.13
HMGCL-206ENST00000496907 MSH5O43196 834 aa13.99□□□□□ -0.17
HMGCL-206ENST00000496907 DNAJC5BQ9UF47 199 aa13.5□□□□□ -0.25
HMGCL-206ENST00000496907 ABCC9O60706 1549 aa13.48□□□□□ -0.25
HMGCL-206ENST00000496907 PIAS4Q8N2W9 510 aaPredicted RBP13.32□□□□□ -0.28
HMGCL-206ENST00000496907 DNAJC5Q9H3Z4 198 aa12.97□□□□□ -0.33
HMGCL-206ENST00000496907 CCDC180Q9P1Z9 1646 aa12.92□□□□□ -0.34
HMGCL-206ENST00000496907 PPP6R1Q9UPN7 881 aa12.86□□□□□ -0.35
HMGCL-206ENST00000496907 ADRA2BP18089 450 aa12.72□□□□□ -0.37
HMGCL-206ENST00000496907 CACNB1Q02641 598 aaPredicted RBP12.7□□□□□ -0.38
HMGCL-206ENST00000496907 RB1CC1Q8TDY2 1594 aa12.47□□□□□ -0.41
HMGCL-206ENST00000496907 PABPN1Q86U42 306 aaKnown RBP eCLIP12.47□□□□□ -0.41
HMGCL-206ENST00000496907 NACADO15069 1562 aa12.27□□□□□ -0.44
HMGCL-206ENST00000496907 PLPPR3Q6T4P5 718 aa12.24□□□□□ -0.45
HMGCL-206ENST00000496907 UNC13AQ9UPW8 1703 aa12.2□□□□□ -0.46
HMGCL-206ENST00000496907 DCAF8L2P0C7V8 631 aa12.2□□□□□ -0.46
HMGCL-206ENST00000496907 CECR2Q9BXF3 1484 aa12.19□□□□□ -0.46
HMGCL-206ENST00000496907 TRIM41Q8WV44 630 aa12.18□□□□□ -0.46
HMGCL-206ENST00000496907 DMRT2Q9Y5R5 561 aa12.09□□□□□ -0.47
HMGCL-206ENST00000496907 BICRAQ9NZM4 1560 aa12.09□□□□□ -0.47
HMGCL-206ENST00000496907 CC2D2AQ9P2K1 1620 aa12.06□□□□□ -0.48
HMGCL-206ENST00000496907 MAPK8IP2Q13387 824 aaPredicted RBP12.04□□□□□ -0.48
HMGCL-206ENST00000496907 POTEHQ6S545 545 aa11.98□□□□□ -0.49
HMGCL-206ENST00000496907 MYO15BQ96JP2 1530 aa11.94□□□□□ -0.5
HMGCL-206ENST00000496907 RNF39Q9H2S5 420 aa11.88□□□□□ -0.51
HMGCL-206ENST00000496907 SHROOM4Q9ULL8 1493 aa11.88□□□□□ -0.51
HMGCL-206ENST00000496907 ZCCHC6Q5VYS8 1495 aaKnown RBP11.85□□□□□ -0.51
HMGCL-206ENST00000496907 EIF4G1Q04637 1599 aaKnown RBP11.84□□□□□ -0.51
HMGCL-206ENST00000496907 CUX2O14529 1486 aa11.84□□□□□ -0.51
HMGCL-206ENST00000496907 DCAF1Q9Y4B6 1507 aa11.84□□□□□ -0.51
HMGCL-206ENST00000496907 SCRIBQ14160 1630 aa11.79□□□□□ -0.52
HMGCL-206ENST00000496907 ERCC6Q03468 1493 aa11.68□□□□□ -0.54
HMGCL-206ENST00000496907 DCAF8L1A6NGE4 600 aa11.65□□□□□ -0.54
HMGCL-206ENST00000496907 C1QBPQ07021 282 aaKnown RBP11.61□□□□□ -0.55
HMGCL-206ENST00000496907 SCAF1Q9H7N4 1312 aaKnown RBP11.52□□□□□ -0.57
HMGCL-206ENST00000496907 ILDR1Q86SU0 546 aaPredicted RBP11.36□□□□□ -0.59
HMGCL-206ENST00000496907 TRHP20396 242 aaPredicted RBP11.33□□□□□ -0.6
HMGCL-206ENST00000496907 NESP48681 1621 aa11.33□□□□□ -0.6
HMGCL-206ENST00000496907 NCAPD3P42695 1498 aa11.31□□□□□ -0.6
HMGCL-206ENST00000496907 THOC2Q8NI27 1593 aaKnown RBP11.29□□□□□ -0.6
HMGCL-206ENST00000496907 ATAD2BQ9ULI0 1458 aa11.25□□□□□ -0.61
HMGCL-206ENST00000496907 OSCARQ8IYS5 282 aa11.24□□□□□ -0.61
HMGCL-206ENST00000496907 SMARCA2P51531 1590 aa11.23□□□□□ -0.61
HMGCL-206ENST00000496907 HOXD11P31277 338 aaPredicted RBP11.22□□□□□ -0.61
HMGCL-206ENST00000496907 HMGXB3Q12766 1538 aa11.22□□□□□ -0.61
HMGCL-206ENST00000496907 BAZ1AQ9NRL2 1556 aaPredicted RBP11.2□□□□□ -0.62
HMGCL-206ENST00000496907 RIMBP3CA6NJZ7 1639 aa11.2□□□□□ -0.62
HMGCL-206ENST00000496907 RIMBP3BA6NNM3 1639 aa11.2□□□□□ -0.62
HMGCL-206ENST00000496907 RIMBP3Q9UFD9 1639 aa11.2□□□□□ -0.62
HMGCL-206ENST00000496907 SMARCA4P51532 1647 aa11.18□□□□□ -0.62
HMGCL-206ENST00000496907 KIF21AQ7Z4S6 1674 aa11.17□□□□□ -0.62
HMGCL-206ENST00000496907 BAZ1BQ9UIG0 1483 aaKnown RBP11.16□□□□□ -0.62
HMGCL-206ENST00000496907 LAMC3Q9Y6N6 1575 aa11.15□□□□□ -0.62
HMGCL-206ENST00000496907 CYB5RLQ6IPT4 315 aa11.12□□□□□ -0.63
HMGCL-206ENST00000496907 PDS5BQ9NTI5 1447 aa11.09□□□□□ -0.63
HMGCL-206ENST00000496907 ARHGEF11O15085 1522 aa11.05□□□□□ -0.64
HMGCL-206ENST00000496907 MRC2Q9UBG0 1479 aa11.03□□□□□ -0.64
HMGCL-206ENST00000496907 PEG3Q9GZU2 1588 aa11.03□□□□□ -0.64
HMGCL-206ENST00000496907 WDR62O43379 1518 aa11□□□□□ -0.65
HMGCL-206ENST00000496907 CADPSQ9ULU8 1353 aa10.96□□□□□ -0.65
HMGCL-206ENST00000496907 MROH2BQ7Z745 1585 aa10.95□□□□□ -0.66
HMGCL-206ENST00000496907 CEP164Q9UPV0 1460 aa10.93□□□□□ -0.66
HMGCL-206ENST00000496907 RSF1Q96T23 1441 aaPredicted RBP10.9□□□□□ -0.66
HMGCL-206ENST00000496907 ARAP1Q96P48 1450 aa10.89□□□□□ -0.67
HMGCL-206ENST00000496907 FANCD2Q9BXW9 1451 aa10.87□□□□□ -0.67
HMGCL-206ENST00000496907 WIZO95785 1651 aa10.83□□□□□ -0.68
HMGCL-206ENST00000496907 RNF216Q9NWF9 866 aaPredicted RBP10.83□□□□□ -0.68
HMGCL-206ENST00000496907 URB2Q14146 1524 aaKnown RBP10.79□□□□□ -0.68
HMGCL-206ENST00000496907 DSG3P32926 999 aa10.77□□□□□ -0.69
HMGCL-206ENST00000496907 CFTRP13569 1480 aa10.76□□□□□ -0.69
HMGCL-206ENST00000496907 SUPT5HO00267 1087 aaKnown RBP10.76□□□□□ -0.69
HMGCL-206ENST00000496907 TOP2AP11388 1531 aaKnown RBP10.73□□□□□ -0.69
HMGCL-206ENST00000496907 ZNF608Q9ULD9 1512 aaPredicted RBP10.72□□□□□ -0.69
HMGCL-206ENST00000496907 KDM4FA0A1W2PPD8 638 aa10.71□□□□□ -0.69
HMGCL-206ENST00000496907 SP7Q8TDD2 431 aaPredicted RBP10.7□□□□□ -0.7
HMGCL-206ENST00000496907 PRDM2Q13029 1718 aa10.7□□□□□ -0.7
HMGCL-206ENST00000496907 IFT140Q96RY7 1462 aa10.69□□□□□ -0.7
HMGCL-206ENST00000496907 LMTK3Q96Q04 1460 aa10.68□□□□□ -0.7
HMGCL-206ENST00000496907 CHD1O14646 1710 aa10.68□□□□□ -0.7
HMGCL-206ENST00000496907 EIF4G3O43432 1585 aaKnown RBP10.68□□□□□ -0.7
HMGCL-206ENST00000496907 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.67□□□□□ -0.7
HMGCL-206ENST00000496907 FBLN2P98095 1184 aa10.66□□□□□ -0.7
HMGCL-206ENST00000496907 CNKSR2Q8WXI2 1034 aa10.64□□□□□ -0.71
HMGCL-206ENST00000496907 PPP4R3CPQ6ZMV5 832 aa10.62□□□□□ -0.71
HMGCL-206ENST00000496907 FBXO41Q8TF61 875 aa10.62□□□□□ -0.71
HMGCL-206ENST00000496907 TOPBP1Q92547 1522 aa10.62□□□□□ -0.71
HMGCL-206ENST00000496907 CCDC88BA6NC98 1476 aa10.61□□□□□ -0.71
HMGCL-206ENST00000496907 SOCS7O14512 581 aa10.61□□□□□ -0.71
HMGCL-206ENST00000496907 ILDR2Q71H61 639 aa10.61□□□□□ -0.71
HMGCL-206ENST00000496907 AQRO60306 1485 aaKnown RBP eCLIP10.58□□□□□ -0.72
HMGCL-206ENST00000496907 SPINK5Q9NQ38 1064 aaPredicted RBP10.57□□□□□ -0.72
HMGCL-206ENST00000496907 DNMBPQ6XZF7 1577 aa10.56□□□□□ -0.72
HMGCL-206ENST00000496907 ABCC8Q09428 1581 aa10.56□□□□□ -0.72
HMGCL-206ENST00000496907 TARBP1Q13395 1621 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms