RNA–Protein interactions for RNA: ENST00000493540.1

CAB39-206, Transcript of calcium binding protein 39, humanhuman

TSL 4

Gene CAB39, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAB39-206ENST00000493540 AEBP2Q6ZN18 517 aaPredicted RBP21.48■■□□□ 1.03
CAB39-206ENST00000493540 CHIC1Q5VXU3 224 aa21.01■□□□□ 0.95
CAB39-206ENST00000493540 PHF23Q9BUL5 403 aaPredicted RBP18.48■□□□□ 0.55
CAB39-206ENST00000493540 SENP3Q9H4L4 574 aaPredicted RBP18.43■□□□□ 0.54
CAB39-206ENST00000493540 NISCHQ9Y2I1 1504 aa18.3■□□□□ 0.52
CAB39-206ENST00000493540 FOXD1Q16676 465 aa17.23■□□□□ 0.35
CAB39-206ENST00000493540 PLPPR3Q6T4P5 718 aa17.16■□□□□ 0.34
CAB39-206ENST00000493540 POTEDQ86YR6 584 aa16.8■□□□□ 0.28
CAB39-206ENST00000493540 CCDC180Q9P1Z9 1646 aa16.69■□□□□ 0.26
CAB39-206ENST00000493540 ABCC9O60706 1549 aa16.37■□□□□ 0.21
CAB39-206ENST00000493540 MSH5O43196 834 aa16.33■□□□□ 0.2
CAB39-206ENST00000493540 PPP6R1Q9UPN7 881 aa16.26■□□□□ 0.19
CAB39-206ENST00000493540 ADRA2BP18089 450 aa16.25■□□□□ 0.19
CAB39-206ENST00000493540 PIAS4Q8N2W9 510 aaPredicted RBP16.01■□□□□ 0.15
CAB39-206ENST00000493540 RB1CC1Q8TDY2 1594 aa15.73■□□□□ 0.11
CAB39-206ENST00000493540 UNC13AQ9UPW8 1703 aa15.65■□□□□ 0.1
CAB39-206ENST00000493540 NACADO15069 1562 aa15.63■□□□□ 0.09
CAB39-206ENST00000493540 MYO15BQ96JP2 1530 aa15.5■□□□□ 0.07
CAB39-206ENST00000493540 BICRAQ9NZM4 1560 aa15.38■□□□□ 0.05
CAB39-206ENST00000493540 DNAJC5BQ9UF47 199 aa15.37■□□□□ 0.05
CAB39-206ENST00000493540 DCAF1Q9Y4B6 1507 aa15.26■□□□□ 0.03
CAB39-206ENST00000493540 ZCCHC6Q5VYS8 1495 aaKnown RBP15.22■□□□□ 0.03
CAB39-206ENST00000493540 SHROOM4Q9ULL8 1493 aa15.2■□□□□ 0.02
CAB39-206ENST00000493540 PPP4R3CPQ6ZMV5 832 aa15.12■□□□□ 0.01
CAB39-206ENST00000493540 PABPN1Q86U42 306 aaKnown RBP eCLIP15.04■□□□□ -0
CAB39-206ENST00000493540 CC2D2AQ9P2K1 1620 aa14.96□□□□□ -0.01
CAB39-206ENST00000493540 SCRIBQ14160 1630 aa14.95□□□□□ -0.02
CAB39-206ENST00000493540 SCAF1Q9H7N4 1312 aaKnown RBP14.93□□□□□ -0.02
CAB39-206ENST00000493540 EIF4G1Q04637 1599 aaKnown RBP14.93□□□□□ -0.02
CAB39-206ENST00000493540 KCNA4P22459 653 aa14.92□□□□□ -0.02
CAB39-206ENST00000493540 DCAF8L2P0C7V8 631 aa14.9□□□□□ -0.02
CAB39-206ENST00000493540 NCBP3Q53F19 620 aaKnown RBP14.8□□□□□ -0.04
CAB39-206ENST00000493540 CECR2Q9BXF3 1484 aa14.79□□□□□ -0.04
CAB39-206ENST00000493540 MAPK8IP2Q13387 824 aaPredicted RBP14.7□□□□□ -0.06
CAB39-206ENST00000493540 CNKSR2Q8WXI2 1034 aa14.68□□□□□ -0.06
CAB39-206ENST00000493540 NPM3O75607 178 aaKnown RBP14.55□□□□□ -0.08
CAB39-206ENST00000493540 DMRT2Q9Y5R5 561 aa14.52□□□□□ -0.09
CAB39-206ENST00000493540 HMGXB3Q12766 1538 aa14.38□□□□□ -0.11
CAB39-206ENST00000493540 CACNB1Q02641 598 aaPredicted RBP14.37□□□□□ -0.11
CAB39-206ENST00000493540 NCAPD3P42695 1498 aa14.37□□□□□ -0.11
CAB39-206ENST00000493540 SMARCA4P51532 1647 aa14.37□□□□□ -0.11
CAB39-206ENST00000493540 RNF216Q9NWF9 866 aaPredicted RBP14.35□□□□□ -0.11
CAB39-206ENST00000493540 PEG3Q9GZU2 1588 aa14.34□□□□□ -0.11
CAB39-206ENST00000493540 SMARCA2P51531 1590 aa14.3□□□□□ -0.12
CAB39-206ENST00000493540 CUX2O14529 1486 aa14.29□□□□□ -0.12
CAB39-206ENST00000493540 ATAD2BQ9ULI0 1458 aa14.29□□□□□ -0.12
CAB39-206ENST00000493540 SLC4A1APQ9BWU0 796 aaKnown RBP14.26□□□□□ -0.13
CAB39-206ENST00000493540 HOXD11P31277 338 aaPredicted RBP14.24□□□□□ -0.13
CAB39-206ENST00000493540 BAZ1AQ9NRL2 1556 aaPredicted RBP14.23□□□□□ -0.13
CAB39-206ENST00000493540 THOC2Q8NI27 1593 aaKnown RBP14.21□□□□□ -0.14
CAB39-206ENST00000493540 DNAJC5Q9H3Z4 198 aa14.17□□□□□ -0.14
CAB39-206ENST00000493540 LAMC3Q9Y6N6 1575 aa14.13□□□□□ -0.15
CAB39-206ENST00000493540 KIF21AQ7Z4S6 1674 aa14.13□□□□□ -0.15
CAB39-206ENST00000493540 NESP48681 1621 aa14.11□□□□□ -0.15
CAB39-206ENST00000493540 BAZ1BQ9UIG0 1483 aaKnown RBP14.1□□□□□ -0.15
CAB39-206ENST00000493540 ERCC6Q03468 1493 aa14.09□□□□□ -0.15
CAB39-206ENST00000493540 MROH2BQ7Z745 1585 aa14.07□□□□□ -0.16
CAB39-206ENST00000493540 DCAF8L1A6NGE4 600 aa14.04□□□□□ -0.16
CAB39-206ENST00000493540 EHMT2Q96KQ7 1210 aa14.02□□□□□ -0.17
CAB39-206ENST00000493540 WIZO95785 1651 aa13.95□□□□□ -0.18
CAB39-206ENST00000493540 PRDM2Q13029 1718 aa13.94□□□□□ -0.18
CAB39-206ENST00000493540 WDR62O43379 1518 aa13.92□□□□□ -0.18
CAB39-206ENST00000493540 RNF39Q9H2S5 420 aa13.87□□□□□ -0.19
CAB39-206ENST00000493540 PDS5BQ9NTI5 1447 aa13.86□□□□□ -0.19
CAB39-206ENST00000493540 MRC2Q9UBG0 1479 aa13.84□□□□□ -0.19
CAB39-206ENST00000493540 CADPSQ9ULU8 1353 aa13.82□□□□□ -0.2
CAB39-206ENST00000493540 CSRNP3Q8WYN3 585 aa13.8□□□□□ -0.2
CAB39-206ENST00000493540 TOP2AP11388 1531 aaKnown RBP13.78□□□□□ -0.2
CAB39-206ENST00000493540 CFTRP13569 1480 aa13.75□□□□□ -0.21
CAB39-206ENST00000493540 CEP164Q9UPV0 1460 aa13.74□□□□□ -0.21
CAB39-206ENST00000493540 ZBTB22O15209 634 aa13.71□□□□□ -0.21
CAB39-206ENST00000493540 FOXD4L1Q9NU39 408 aa13.71□□□□□ -0.21
CAB39-206ENST00000493540 FANCD2Q9BXW9 1451 aa13.7□□□□□ -0.22
CAB39-206ENST00000493540 RSF1Q96T23 1441 aaPredicted RBP13.7□□□□□ -0.22
CAB39-206ENST00000493540 SLC4A2P04920 1241 aa13.69□□□□□ -0.22
CAB39-206ENST00000493540 URB2Q14146 1524 aaKnown RBP13.66□□□□□ -0.22
CAB39-206ENST00000493540 C1QBPQ07021 282 aaKnown RBP13.65□□□□□ -0.22
CAB39-206ENST00000493540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.59□□□□□ -0.23
CAB39-206ENST00000493540 EIF4G3O43432 1585 aaKnown RBP13.52□□□□□ -0.25
CAB39-206ENST00000493540 TARBP1Q13395 1621 aaKnown RBP13.5□□□□□ -0.25
CAB39-206ENST00000493540 CCDC88BA6NC98 1476 aa13.5□□□□□ -0.25
CAB39-206ENST00000493540 DNMBPQ6XZF7 1577 aa13.49□□□□□ -0.25
CAB39-206ENST00000493540 RIMBP3CA6NJZ7 1639 aa13.49□□□□□ -0.25
CAB39-206ENST00000493540 RIMBP3BA6NNM3 1639 aa13.49□□□□□ -0.25
CAB39-206ENST00000493540 RIMBP3Q9UFD9 1639 aa13.49□□□□□ -0.25
CAB39-206ENST00000493540 TOPBP1Q92547 1522 aa13.49□□□□□ -0.25
CAB39-206ENST00000493540 CHD1O14646 1710 aa13.48□□□□□ -0.25
CAB39-206ENST00000493540 IFT140Q96RY7 1462 aa13.47□□□□□ -0.25
CAB39-206ENST00000493540 MYCNP04198 464 aaPredicted RBP13.45□□□□□ -0.26
CAB39-206ENST00000493540 ZNF608Q9ULD9 1512 aaPredicted RBP13.44□□□□□ -0.26
CAB39-206ENST00000493540 ABCC8Q09428 1581 aa13.43□□□□□ -0.26
CAB39-206ENST00000493540 WDR97A6NE52 1622 aa13.42□□□□□ -0.26
CAB39-206ENST00000493540 ARHGEF11O15085 1522 aa13.39□□□□□ -0.27
CAB39-206ENST00000493540 U3KPZ7 1027 aaPredicted RBP13.36□□□□□ -0.27
CAB39-206ENST00000493540 POLA1P09884 1462 aaPredicted RBP13.34□□□□□ -0.27
CAB39-206ENST00000493540 OSCARQ8IYS5 282 aa13.33□□□□□ -0.28
CAB39-206ENST00000493540 CLASP1Q7Z460 1538 aa13.29□□□□□ -0.28
CAB39-206ENST00000493540 PBRM1Q86U86 1689 aa13.29□□□□□ -0.28
CAB39-206ENST00000493540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.29□□□□□ -0.28
CAB39-206ENST00000493540 HNRNPUL2Q1KMD3 747 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms