RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-215ENST00000492606 AEBP2Q6ZN18 517 aaPredicted RBP14□□□□□ -0.17
UBR4-215ENST00000492606 CHIC1Q5VXU3 224 aa13.92□□□□□ -0.18
UBR4-215ENST00000492606 PHF23Q9BUL5 403 aaPredicted RBP12.38□□□□□ -0.43
UBR4-215ENST00000492606 DNAJC5BQ9UF47 199 aa12.26□□□□□ -0.45
UBR4-215ENST00000492606 DNAJC5Q9H3Z4 198 aa12.06□□□□□ -0.48
UBR4-215ENST00000492606 ABCC9O60706 1549 aa11.76□□□□□ -0.53
UBR4-215ENST00000492606 SENP3Q9H4L4 574 aaPredicted RBP11.65□□□□□ -0.54
UBR4-215ENST00000492606 PLPPR3Q6T4P5 718 aa11.38□□□□□ -0.59
UBR4-215ENST00000492606 NISCHQ9Y2I1 1504 aa11.09□□□□□ -0.63
UBR4-215ENST00000492606 TRIM41Q8WV44 630 aa11.01□□□□□ -0.65
UBR4-215ENST00000492606 FOXD1Q16676 465 aa10.87□□□□□ -0.67
UBR4-215ENST00000492606 PPP6R1Q9UPN7 881 aa10.81□□□□□ -0.68
UBR4-215ENST00000492606 ADRA2BP18089 450 aa10.8□□□□□ -0.68
UBR4-215ENST00000492606 PABPN1Q86U42 306 aaKnown RBP eCLIP10.77□□□□□ -0.692e-26■■■■■ 41.9
UBR4-215ENST00000492606 CECR2Q9BXF3 1484 aa10.68□□□□□ -0.7
UBR4-215ENST00000492606 ILDR1Q86SU0 546 aaPredicted RBP10.6□□□□□ -0.71
UBR4-215ENST00000492606 CUX2O14529 1486 aa10.55□□□□□ -0.72
UBR4-215ENST00000492606 RB1CC1Q8TDY2 1594 aa10.54□□□□□ -0.72
UBR4-215ENST00000492606 CC2D2AQ9P2K1 1620 aa10.54□□□□□ -0.72
UBR4-215ENST00000492606 CCDC180Q9P1Z9 1646 aa10.44□□□□□ -0.74
UBR4-215ENST00000492606 UNC13AQ9UPW8 1703 aa10.41□□□□□ -0.74
UBR4-215ENST00000492606 BICRAQ9NZM4 1560 aa10.4□□□□□ -0.74
UBR4-215ENST00000492606 KCNA4P22459 653 aa10.33□□□□□ -0.76
UBR4-215ENST00000492606 PIAS4Q8N2W9 510 aaPredicted RBP10.24□□□□□ -0.77
UBR4-215ENST00000492606 EIF4G1Q04637 1599 aaKnown RBP10.18□□□□□ -0.78
UBR4-215ENST00000492606 NACADO15069 1562 aa10.16□□□□□ -0.78
UBR4-215ENST00000492606 ERCC6Q03468 1493 aa10.14□□□□□ -0.79
UBR4-215ENST00000492606 PPP4R3CPQ6ZMV5 832 aa10.12□□□□□ -0.79
UBR4-215ENST00000492606 TRHP20396 242 aaPredicted RBP10.04□□□□□ -0.8
UBR4-215ENST00000492606 RIMBP3CA6NJZ7 1639 aa9.95□□□□□ -0.82
UBR4-215ENST00000492606 RIMBP3BA6NNM3 1639 aa9.95□□□□□ -0.82
UBR4-215ENST00000492606 RIMBP3Q9UFD9 1639 aa9.95□□□□□ -0.82
UBR4-215ENST00000492606 SHROOM4Q9ULL8 1493 aa9.94□□□□□ -0.82
UBR4-215ENST00000492606 EHMT2Q96KQ7 1210 aa9.92□□□□□ -0.82
UBR4-215ENST00000492606 DCAF8L2P0C7V8 631 aa9.91□□□□□ -0.82
UBR4-215ENST00000492606 SOCS7O14512 581 aa9.89□□□□□ -0.83
UBR4-215ENST00000492606 THOC2Q8NI27 1593 aaKnown RBP9.88□□□□□ -0.83
UBR4-215ENST00000492606 OSCARQ8IYS5 282 aa9.88□□□□□ -0.83
UBR4-215ENST00000492606 LMTK3Q96Q04 1460 aa9.86□□□□□ -0.83
UBR4-215ENST00000492606 NPM3O75607 178 aaKnown RBP9.84□□□□□ -0.83
UBR4-215ENST00000492606 BAZ1AQ9NRL2 1556 aaPredicted RBP9.84□□□□□ -0.83
UBR4-215ENST00000492606 NCBP3Q53F19 620 aaKnown RBP9.83□□□□□ -0.84
UBR4-215ENST00000492606 ILDR2Q71H61 639 aa9.83□□□□□ -0.84
UBR4-215ENST00000492606 SLC4A1APQ9BWU0 796 aaKnown RBP9.81□□□□□ -0.84
UBR4-215ENST00000492606 CYB5RLQ6IPT4 315 aa9.78□□□□□ -0.84
UBR4-215ENST00000492606 NESP48681 1621 aa9.78□□□□□ -0.84
UBR4-215ENST00000492606 CSRNP3Q8WYN3 585 aa9.77□□□□□ -0.85
UBR4-215ENST00000492606 ARHGEF11O15085 1522 aa9.77□□□□□ -0.85
UBR4-215ENST00000492606 MSH5O43196 834 aa9.75□□□□□ -0.85
UBR4-215ENST00000492606 CNKSR2Q8WXI2 1034 aa9.73□□□□□ -0.85
UBR4-215ENST00000492606 FBXO41Q8TF61 875 aa9.72□□□□□ -0.85
UBR4-215ENST00000492606 MAPK8IP2Q13387 824 aaPredicted RBP9.68□□□□□ -0.86
UBR4-215ENST00000492606 SCAF1Q9H7N4 1312 aaKnown RBP9.66□□□□□ -0.86
UBR4-215ENST00000492606 SMARCA2P51531 1590 aa9.66□□□□□ -0.86
UBR4-215ENST00000492606 KDM4FA0A1W2PPD8 638 aa9.63□□□□□ -0.87
UBR4-215ENST00000492606 ARAP1Q96P48 1450 aa9.61□□□□□ -0.87
UBR4-215ENST00000492606 ZBTB22O15209 634 aa9.59□□□□□ -0.87
UBR4-215ENST00000492606 MYO15BQ96JP2 1530 aa9.58□□□□□ -0.88
UBR4-215ENST00000492606 SCRIBQ14160 1630 aa9.57□□□□□ -0.88
UBR4-215ENST00000492606 ERCC6L2Q5T890 1561 aa9.57□□□□□ -0.88
UBR4-215ENST00000492606 KIF21AQ7Z4S6 1674 aa9.57□□□□□ -0.88
UBR4-215ENST00000492606 DISP3Q9P2K9 1392 aa9.54□□□□□ -0.88
UBR4-215ENST00000492606 HECW2Q9P2P5 1572 aa9.48□□□□□ -0.89
UBR4-215ENST00000492606 RNF216Q9NWF9 866 aaPredicted RBP9.46□□□□□ -0.9
UBR4-215ENST00000492606 NCAPD3P42695 1498 aa9.44□□□□□ -0.9
UBR4-215ENST00000492606 WDR62O43379 1518 aa9.42□□□□□ -0.9
UBR4-215ENST00000492606 DMRT2Q9Y5R5 561 aa9.41□□□□□ -0.9
UBR4-215ENST00000492606 HOXD11P31277 338 aaPredicted RBP9.39□□□□□ -0.91
UBR4-215ENST00000492606 MRC2Q9UBG0 1479 aa9.39□□□□□ -0.91
UBR4-215ENST00000492606 LAMC3Q9Y6N6 1575 aa9.38□□□□□ -0.91
UBR4-215ENST00000492606 PDS5BQ9NTI5 1447 aa9.36□□□□□ -0.91
UBR4-215ENST00000492606 SYNJ2O15056 1496 aa9.34□□□□□ -0.91
UBR4-215ENST00000492606 FOXD4L1Q9NU39 408 aa9.33□□□□□ -0.92
UBR4-215ENST00000492606 SPATA31D1Q6ZQQ2 1576 aa9.29□□□□□ -0.92
UBR4-215ENST00000492606 SLC4A2P04920 1241 aa9.27□□□□□ -0.93
UBR4-215ENST00000492606 RSF1Q96T23 1441 aaPredicted RBP9.26□□□□□ -0.93
UBR4-215ENST00000492606 ATAD2BQ9ULI0 1458 aa9.25□□□□□ -0.93
UBR4-215ENST00000492606 HMGXB3Q12766 1538 aa9.21□□□□□ -0.93
UBR4-215ENST00000492606 ADGRL1O94910 1474 aa9.2□□□□□ -0.94
UBR4-215ENST00000492606 KIF13AQ9H1H9 1805 aa9.19□□□□□ -0.94
UBR4-215ENST00000492606 CHD1O14646 1710 aa9.18□□□□□ -0.94
UBR4-215ENST00000492606 ZNF608Q9ULD9 1512 aaPredicted RBP9.15□□□□□ -0.94
UBR4-215ENST00000492606 SMARCA4P51532 1647 aa9.13□□□□□ -0.95
UBR4-215ENST00000492606 KDM6BO15054 1643 aa9.08□□□□□ -0.96
UBR4-215ENST00000492606 CADPSQ9ULU8 1353 aa9.08□□□□□ -0.96
UBR4-215ENST00000492606 CEP164Q9UPV0 1460 aa9.08□□□□□ -0.96
UBR4-215ENST00000492606 URB2Q14146 1524 aaKnown RBP9.05□□□□□ -0.96
UBR4-215ENST00000492606 BAZ1BQ9UIG0 1483 aaKnown RBP9.04□□□□□ -0.96
UBR4-215ENST00000492606 FBLN2P98095 1184 aa9.04□□□□□ -0.96
UBR4-215ENST00000492606 CLASP1Q7Z460 1538 aa9.04□□□□□ -0.96
UBR4-215ENST00000492606 GAPVD1Q14C86 1478 aa9.03□□□□□ -0.96
UBR4-215ENST00000492606 CERKQ8TCT0 537 aa9.03□□□□□ -0.96
UBR4-215ENST00000492606 DCAF1Q9Y4B6 1507 aa9.01□□□□□ -0.97
UBR4-215ENST00000492606 MYCNP04198 464 aaPredicted RBP9□□□□□ -0.97
UBR4-215ENST00000492606 FANCD2Q9BXW9 1451 aa8.99□□□□□ -0.97
UBR4-215ENST00000492606 EIF4G3O43432 1585 aaKnown RBP8.99□□□□□ -0.97
UBR4-215ENST00000492606 ATXN8OSP0DMR3 200 aa8.97□□□□□ -0.97
UBR4-215ENST00000492606 FAM69CQ0P6D2 419 aa8.96□□□□□ -0.98
UBR4-215ENST00000492606 IFT140Q96RY7 1462 aa8.95□□□□□ -0.98
UBR4-215ENST00000492606 AQRO60306 1485 aaKnown RBP eCLIP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms