RNA–Protein interactions for RNA: ENST00000492571.1

TNFRSF9-203, Transcript of TNF receptor superfamily member 9, humanhuman

TSL 3

Gene TNFRSF9, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF9-203ENST00000492571 AEBP2Q6ZN18 517 aaPredicted RBP29.23■■■□□ 2.27
TNFRSF9-203ENST00000492571 CHIC1Q5VXU3 224 aa27.78■■■□□ 2.04
TNFRSF9-203ENST00000492571 SENP3Q9H4L4 574 aaPredicted RBP24.79■■□□□ 1.56
TNFRSF9-203ENST00000492571 PHF23Q9BUL5 403 aaPredicted RBP24.55■■□□□ 1.52
TNFRSF9-203ENST00000492571 NISCHQ9Y2I1 1504 aa24.39■■□□□ 1.49
TNFRSF9-203ENST00000492571 FOXD1Q16676 465 aa23.17■■□□□ 1.3
TNFRSF9-203ENST00000492571 ABCC9O60706 1549 aa22.33■■□□□ 1.17
TNFRSF9-203ENST00000492571 PLPPR3Q6T4P5 718 aa22.2■■□□□ 1.14
TNFRSF9-203ENST00000492571 CCDC180Q9P1Z9 1646 aa21.92■■□□□ 1.1
TNFRSF9-203ENST00000492571 PPP6R1Q9UPN7 881 aa21.8■■□□□ 1.08
TNFRSF9-203ENST00000492571 ADRA2BP18089 450 aa21.7■■□□□ 1.06
TNFRSF9-203ENST00000492571 PIAS4Q8N2W9 510 aaPredicted RBP21.63■■□□□ 1.05
TNFRSF9-203ENST00000492571 MSH5O43196 834 aa21.54■■□□□ 1.04
TNFRSF9-203ENST00000492571 DNAJC5BQ9UF47 199 aa21.2■□□□□ 0.98
TNFRSF9-203ENST00000492571 RB1CC1Q8TDY2 1594 aa21.12■□□□□ 0.97
TNFRSF9-203ENST00000492571 DCAF8L2P0C7V8 631 aa20.98■□□□□ 0.95
TNFRSF9-203ENST00000492571 POTEDQ86YR6 584 aa20.95■□□□□ 0.94
TNFRSF9-203ENST00000492571 NACADO15069 1562 aa20.9■□□□□ 0.94
TNFRSF9-203ENST00000492571 PABPN1Q86U42 306 aaKnown RBP eCLIP20.83■□□□□ 0.93
TNFRSF9-203ENST00000492571 MYO15BQ96JP2 1530 aa20.5■□□□□ 0.87
TNFRSF9-203ENST00000492571 UNC13AQ9UPW8 1703 aa20.39■□□□□ 0.86
TNFRSF9-203ENST00000492571 BICRAQ9NZM4 1560 aa20.38■□□□□ 0.85
TNFRSF9-203ENST00000492571 SHROOM4Q9ULL8 1493 aa20.21■□□□□ 0.83
TNFRSF9-203ENST00000492571 CECR2Q9BXF3 1484 aa20.17■□□□□ 0.82
TNFRSF9-203ENST00000492571 DCAF1Q9Y4B6 1507 aa20.12■□□□□ 0.81
TNFRSF9-203ENST00000492571 ZCCHC6Q5VYS8 1495 aaKnown RBP20.11■□□□□ 0.81
TNFRSF9-203ENST00000492571 CC2D2AQ9P2K1 1620 aa20.09■□□□□ 0.81
TNFRSF9-203ENST00000492571 SCRIBQ14160 1630 aa20■□□□□ 0.79
TNFRSF9-203ENST00000492571 EIF4G1Q04637 1599 aaKnown RBP19.99■□□□□ 0.79
TNFRSF9-203ENST00000492571 MAPK8IP2Q13387 824 aaPredicted RBP19.94■□□□□ 0.78
TNFRSF9-203ENST00000492571 DNAJC5Q9H3Z4 198 aa19.78■□□□□ 0.76
TNFRSF9-203ENST00000492571 SCAF1Q9H7N4 1312 aaKnown RBP19.72■□□□□ 0.75
TNFRSF9-203ENST00000492571 DMRT2Q9Y5R5 561 aa19.71■□□□□ 0.75
TNFRSF9-203ENST00000492571 PPP4R3CPQ6ZMV5 832 aa19.51■□□□□ 0.71
TNFRSF9-203ENST00000492571 ERCC6Q03468 1493 aa19.39■□□□□ 0.69
TNFRSF9-203ENST00000492571 CUX2O14529 1486 aa19.38■□□□□ 0.69
TNFRSF9-203ENST00000492571 NCAPD3P42695 1498 aa19.33■□□□□ 0.68
TNFRSF9-203ENST00000492571 ATAD2BQ9ULI0 1458 aa19.21■□□□□ 0.67
TNFRSF9-203ENST00000492571 SMARCA2P51531 1590 aa19.15■□□□□ 0.66
TNFRSF9-203ENST00000492571 CNKSR2Q8WXI2 1034 aa19.09■□□□□ 0.65
TNFRSF9-203ENST00000492571 HMGXB3Q12766 1538 aa19.09■□□□□ 0.65
TNFRSF9-203ENST00000492571 NESP48681 1621 aa19.04■□□□□ 0.64
TNFRSF9-203ENST00000492571 SMARCA4P51532 1647 aa19.03■□□□□ 0.64
TNFRSF9-203ENST00000492571 BAZ1BQ9UIG0 1483 aaKnown RBP19.03■□□□□ 0.64
TNFRSF9-203ENST00000492571 HOXD11P31277 338 aaPredicted RBP19.03■□□□□ 0.64
TNFRSF9-203ENST00000492571 BAZ1AQ9NRL2 1556 aaPredicted RBP18.98■□□□□ 0.63
TNFRSF9-203ENST00000492571 PDS5BQ9NTI5 1447 aa18.92■□□□□ 0.62
TNFRSF9-203ENST00000492571 LAMC3Q9Y6N6 1575 aa18.9■□□□□ 0.62
TNFRSF9-203ENST00000492571 RNF216Q9NWF9 866 aaPredicted RBP18.89■□□□□ 0.61
TNFRSF9-203ENST00000492571 DCAF8L1A6NGE4 600 aa18.87■□□□□ 0.61
TNFRSF9-203ENST00000492571 TRIM41Q8WV44 630 aa18.85■□□□□ 0.61
TNFRSF9-203ENST00000492571 PEG3Q9GZU2 1588 aa18.85■□□□□ 0.61
TNFRSF9-203ENST00000492571 THOC2Q8NI27 1593 aaKnown RBP18.83■□□□□ 0.6
TNFRSF9-203ENST00000492571 CADPSQ9ULU8 1353 aa18.78■□□□□ 0.6
TNFRSF9-203ENST00000492571 MROH2BQ7Z745 1585 aa18.76■□□□□ 0.59
TNFRSF9-203ENST00000492571 NCBP3Q53F19 620 aaKnown RBP18.71■□□□□ 0.59
TNFRSF9-203ENST00000492571 KIF21AQ7Z4S6 1674 aa18.69■□□□□ 0.58
TNFRSF9-203ENST00000492571 MRC2Q9UBG0 1479 aa18.68■□□□□ 0.58
TNFRSF9-203ENST00000492571 OSCARQ8IYS5 282 aa18.6■□□□□ 0.57
TNFRSF9-203ENST00000492571 WDR62O43379 1518 aa18.59■□□□□ 0.57
TNFRSF9-203ENST00000492571 CEP164Q9UPV0 1460 aa18.58■□□□□ 0.56
TNFRSF9-203ENST00000492571 NPM3O75607 178 aaKnown RBP18.54■□□□□ 0.56
TNFRSF9-203ENST00000492571 FANCD2Q9BXW9 1451 aa18.52■□□□□ 0.56
TNFRSF9-203ENST00000492571 WIZO95785 1651 aa18.48■□□□□ 0.55
TNFRSF9-203ENST00000492571 CACNB1Q02641 598 aaPredicted RBP18.46■□□□□ 0.55
TNFRSF9-203ENST00000492571 RNF39Q9H2S5 420 aa18.46■□□□□ 0.55
TNFRSF9-203ENST00000492571 CFTRP13569 1480 aa18.44■□□□□ 0.54
TNFRSF9-203ENST00000492571 RSF1Q96T23 1441 aaPredicted RBP18.32■□□□□ 0.52
TNFRSF9-203ENST00000492571 URB2Q14146 1524 aaKnown RBP18.31■□□□□ 0.52
TNFRSF9-203ENST00000492571 KCNA4P22459 653 aa18.3■□□□□ 0.52
TNFRSF9-203ENST00000492571 TOP2AP11388 1531 aaKnown RBP18.28■□□□□ 0.52
TNFRSF9-203ENST00000492571 IFT140Q96RY7 1462 aa18.22■□□□□ 0.51
TNFRSF9-203ENST00000492571 CYB5RLQ6IPT4 315 aa18.17■□□□□ 0.5
TNFRSF9-203ENST00000492571 ZNF608Q9ULD9 1512 aaPredicted RBP18.15■□□□□ 0.5
TNFRSF9-203ENST00000492571 C1QBPQ07021 282 aaKnown RBP18.15■□□□□ 0.5
TNFRSF9-203ENST00000492571 ABCC8Q09428 1581 aa18.14■□□□□ 0.49
TNFRSF9-203ENST00000492571 RIMBP3CA6NJZ7 1639 aa18.14■□□□□ 0.49
TNFRSF9-203ENST00000492571 RIMBP3BA6NNM3 1639 aa18.14■□□□□ 0.49
TNFRSF9-203ENST00000492571 RIMBP3Q9UFD9 1639 aa18.14■□□□□ 0.49
TNFRSF9-203ENST00000492571 TRHP20396 242 aaPredicted RBP18.12■□□□□ 0.49
TNFRSF9-203ENST00000492571 CCDC88BA6NC98 1476 aa18.12■□□□□ 0.49
TNFRSF9-203ENST00000492571 ARHGEF11O15085 1522 aa18.12■□□□□ 0.49
TNFRSF9-203ENST00000492571 FBLN2P98095 1184 aa18.11■□□□□ 0.49
TNFRSF9-203ENST00000492571 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.1■□□□□ 0.49
TNFRSF9-203ENST00000492571 TOPBP1Q92547 1522 aa18.09■□□□□ 0.49
TNFRSF9-203ENST00000492571 PRDM2Q13029 1718 aa18.03■□□□□ 0.48
TNFRSF9-203ENST00000492571 AQRO60306 1485 aaKnown RBP eCLIP18.01■□□□□ 0.47
TNFRSF9-203ENST00000492571 DNMBPQ6XZF7 1577 aa17.99■□□□□ 0.47
TNFRSF9-203ENST00000492571 EIF4G3O43432 1585 aaKnown RBP17.98■□□□□ 0.47
TNFRSF9-203ENST00000492571 CHMP7Q8WUX9 453 aaPredicted RBP17.93■□□□□ 0.46
TNFRSF9-203ENST00000492571 SOGA1O94964 1423 aa17.9■□□□□ 0.46
TNFRSF9-203ENST00000492571 TDRD9Q8NDG6 1382 aaKnown RBP17.9■□□□□ 0.46
TNFRSF9-203ENST00000492571 POLA1P09884 1462 aaPredicted RBP17.89■□□□□ 0.45
TNFRSF9-203ENST00000492571 ARAP1Q96P48 1450 aa17.89■□□□□ 0.45
TNFRSF9-203ENST00000492571 TARBP1Q13395 1621 aaKnown RBP17.88■□□□□ 0.45
TNFRSF9-203ENST00000492571 CHD1O14646 1710 aa17.85■□□□□ 0.45
TNFRSF9-203ENST00000492571 RAD54L2Q9Y4B4 1467 aa17.85■□□□□ 0.45
TNFRSF9-203ENST00000492571 U3KPZ7 1027 aaPredicted RBP17.79■□□□□ 0.44
TNFRSF9-203ENST00000492571 SNAPC4Q5SXM2 1469 aa17.79■□□□□ 0.44
TNFRSF9-203ENST00000492571 MAGI1Q96QZ7 1491 aaPredicted RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms