RNA–Protein interactions for RNA: ENST00000488758.1

APOBEC3A-203, Transcript of apolipoprotein B mRNA editing enzyme catalytic subunit 3A, humanhuman

TSL 2

Gene APOBEC3A, Length 344 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOBEC3A-203ENST00000488758 AEBP2Q6ZN18 517 aaPredicted RBP19.57■□□□□ 0.72
APOBEC3A-203ENST00000488758 CHIC1Q5VXU3 224 aa18.89■□□□□ 0.61
APOBEC3A-203ENST00000488758 NISCHQ9Y2I1 1504 aa17.36■□□□□ 0.37
APOBEC3A-203ENST00000488758 SENP3Q9H4L4 574 aaPredicted RBP16.65■□□□□ 0.26
APOBEC3A-203ENST00000488758 PHF23Q9BUL5 403 aaPredicted RBP16.58■□□□□ 0.24
APOBEC3A-203ENST00000488758 FOXD1Q16676 465 aa15.47■□□□□ 0.07
APOBEC3A-203ENST00000488758 PLPPR3Q6T4P5 718 aa15.24■□□□□ 0.03
APOBEC3A-203ENST00000488758 CCDC180Q9P1Z9 1646 aa15.21■□□□□ 0.02
APOBEC3A-203ENST00000488758 ABCC9O60706 1549 aa14.88□□□□□ -0.03
APOBEC3A-203ENST00000488758 PPP6R1Q9UPN7 881 aa14.69□□□□□ -0.06
APOBEC3A-203ENST00000488758 ADRA2BP18089 450 aa14.67□□□□□ -0.06
APOBEC3A-203ENST00000488758 PIAS4Q8N2W9 510 aaPredicted RBP14.56□□□□□ -0.08
APOBEC3A-203ENST00000488758 ZCCHC6Q5VYS8 1495 aaKnown RBP14.52□□□□□ -0.08
APOBEC3A-203ENST00000488758 DCAF8L2P0C7V8 631 aa14.51□□□□□ -0.09
APOBEC3A-203ENST00000488758 MSH5O43196 834 aa14.36□□□□□ -0.11
APOBEC3A-203ENST00000488758 DCAF1Q9Y4B6 1507 aa14.35□□□□□ -0.11
APOBEC3A-203ENST00000488758 MYO15BQ96JP2 1530 aa14.25□□□□□ -0.13
APOBEC3A-203ENST00000488758 DNAJC5BQ9UF47 199 aa14.24□□□□□ -0.13
APOBEC3A-203ENST00000488758 NACADO15069 1562 aa14.23□□□□□ -0.13
APOBEC3A-203ENST00000488758 RB1CC1Q8TDY2 1594 aa14.16□□□□□ -0.14
APOBEC3A-203ENST00000488758 SHROOM4Q9ULL8 1493 aa14.06□□□□□ -0.16
APOBEC3A-203ENST00000488758 SCRIBQ14160 1630 aa13.96□□□□□ -0.17
APOBEC3A-203ENST00000488758 UNC13AQ9UPW8 1703 aa13.81□□□□□ -0.2
APOBEC3A-203ENST00000488758 PABPN1Q86U42 306 aaKnown RBP eCLIP13.79□□□□□ -0.2
APOBEC3A-203ENST00000488758 BICRAQ9NZM4 1560 aa13.68□□□□□ -0.22
APOBEC3A-203ENST00000488758 CECR2Q9BXF3 1484 aa13.49□□□□□ -0.25
APOBEC3A-203ENST00000488758 SUPT5HO00267 1087 aaKnown RBP13.49□□□□□ -0.25
APOBEC3A-203ENST00000488758 POTEDQ86YR6 584 aa13.47□□□□□ -0.25
APOBEC3A-203ENST00000488758 CC2D2AQ9P2K1 1620 aa13.43□□□□□ -0.26
APOBEC3A-203ENST00000488758 BAZ1AQ9NRL2 1556 aaPredicted RBP13.43□□□□□ -0.26
APOBEC3A-203ENST00000488758 SCAF1Q9H7N4 1312 aaKnown RBP13.41□□□□□ -0.26
APOBEC3A-203ENST00000488758 RSF1Q96T23 1441 aaPredicted RBP13.39□□□□□ -0.27
APOBEC3A-203ENST00000488758 PPP4R3CPQ6ZMV5 832 aa13.39□□□□□ -0.27
APOBEC3A-203ENST00000488758 MROH2BQ7Z745 1585 aa13.39□□□□□ -0.27
APOBEC3A-203ENST00000488758 SMARCA4P51532 1647 aa13.37□□□□□ -0.27
APOBEC3A-203ENST00000488758 MAPK8IP2Q13387 824 aaPredicted RBP13.36□□□□□ -0.27
APOBEC3A-203ENST00000488758 EIF4G1Q04637 1599 aaKnown RBP13.31□□□□□ -0.28
APOBEC3A-203ENST00000488758 WIZO95785 1651 aa13.27□□□□□ -0.29
APOBEC3A-203ENST00000488758 DNAJC5Q9H3Z4 198 aa13.26□□□□□ -0.29
APOBEC3A-203ENST00000488758 DMRT2Q9Y5R5 561 aa13.25□□□□□ -0.29
APOBEC3A-203ENST00000488758 SMARCA2P51531 1590 aa13.21□□□□□ -0.29
APOBEC3A-203ENST00000488758 ATAD2BQ9ULI0 1458 aa13.21□□□□□ -0.3
APOBEC3A-203ENST00000488758 PEG3Q9GZU2 1588 aa13.2□□□□□ -0.3
APOBEC3A-203ENST00000488758 NCAPD3P42695 1498 aa13.14□□□□□ -0.31
APOBEC3A-203ENST00000488758 BAZ1BQ9UIG0 1483 aaKnown RBP13.14□□□□□ -0.31
APOBEC3A-203ENST00000488758 TOP2AP11388 1531 aaKnown RBP13.13□□□□□ -0.31
APOBEC3A-203ENST00000488758 HMGXB3Q12766 1538 aa13.08□□□□□ -0.32
APOBEC3A-203ENST00000488758 CNKSR2Q8WXI2 1034 aa13.07□□□□□ -0.32
APOBEC3A-203ENST00000488758 CCDC88BA6NC98 1476 aa13.02□□□□□ -0.33
APOBEC3A-203ENST00000488758 NCBP3Q53F19 620 aaKnown RBP12.97□□□□□ -0.33
APOBEC3A-203ENST00000488758 HOXD11P31277 338 aaPredicted RBP12.88□□□□□ -0.35
APOBEC3A-203ENST00000488758 RNF216Q9NWF9 866 aaPredicted RBP12.88□□□□□ -0.35
APOBEC3A-203ENST00000488758 CUX2O14529 1486 aa12.88□□□□□ -0.35
APOBEC3A-203ENST00000488758 KCNA4P22459 653 aa12.85□□□□□ -0.35
APOBEC3A-203ENST00000488758 ERCC6Q03468 1493 aa12.84□□□□□ -0.35
APOBEC3A-203ENST00000488758 CADPSQ9ULU8 1353 aa12.81□□□□□ -0.36
APOBEC3A-203ENST00000488758 NPM3O75607 178 aaKnown RBP12.8□□□□□ -0.36
APOBEC3A-203ENST00000488758 CFTRP13569 1480 aa12.78□□□□□ -0.36
APOBEC3A-203ENST00000488758 LAMC3Q9Y6N6 1575 aa12.72□□□□□ -0.37
APOBEC3A-203ENST00000488758 NESP48681 1621 aa12.71□□□□□ -0.37
APOBEC3A-203ENST00000488758 TRIM41Q8WV44 630 aa12.71□□□□□ -0.37
APOBEC3A-203ENST00000488758 DCAF8L1A6NGE4 600 aa12.69□□□□□ -0.38
APOBEC3A-203ENST00000488758 PRDM2Q13029 1718 aa12.68□□□□□ -0.38
APOBEC3A-203ENST00000488758 PDS5BQ9NTI5 1447 aa12.67□□□□□ -0.38
APOBEC3A-203ENST00000488758 ABCC8Q09428 1581 aa12.65□□□□□ -0.38
APOBEC3A-203ENST00000488758 FANCD2Q9BXW9 1451 aa12.65□□□□□ -0.38
APOBEC3A-203ENST00000488758 THOC2Q8NI27 1593 aaKnown RBP12.64□□□□□ -0.39
APOBEC3A-203ENST00000488758 WRNQ14191 1432 aaPredicted RBP eCLIP12.63□□□□□ -0.39
APOBEC3A-203ENST00000488758 CEP164Q9UPV0 1460 aa12.59□□□□□ -0.39
APOBEC3A-203ENST00000488758 KIF21AQ7Z4S6 1674 aa12.59□□□□□ -0.39
APOBEC3A-203ENST00000488758 SYNJ1O43426 1573 aa12.54□□□□□ -0.4
APOBEC3A-203ENST00000488758 CUX1P39880 1505 aa12.52□□□□□ -0.4
APOBEC3A-203ENST00000488758 TOP2BQ02880 1626 aa12.52□□□□□ -0.4
APOBEC3A-203ENST00000488758 BIVM-ERCC5R4GMW8 1640 aa12.51□□□□□ -0.41
APOBEC3A-203ENST00000488758 DNMBPQ6XZF7 1577 aa12.49□□□□□ -0.41
APOBEC3A-203ENST00000488758 TOPBP1Q92547 1522 aa12.48□□□□□ -0.41
APOBEC3A-203ENST00000488758 URB2Q14146 1524 aaKnown RBP12.47□□□□□ -0.41
APOBEC3A-203ENST00000488758 MRC2Q9UBG0 1479 aa12.47□□□□□ -0.41
APOBEC3A-203ENST00000488758 FAM9AQ8IZU1 332 aaPredicted RBP12.46□□□□□ -0.41
APOBEC3A-203ENST00000488758 FGD5Q6ZNL6 1462 aa12.44□□□□□ -0.42
APOBEC3A-203ENST00000488758 SOGA1O94964 1423 aa12.41□□□□□ -0.42
APOBEC3A-203ENST00000488758 WDR62O43379 1518 aa12.4□□□□□ -0.42
APOBEC3A-203ENST00000488758 POLA1P09884 1462 aaPredicted RBP12.4□□□□□ -0.43
APOBEC3A-203ENST00000488758 EEA1Q15075 1411 aa12.38□□□□□ -0.43
APOBEC3A-203ENST00000488758 RAD54L2Q9Y4B4 1467 aa12.37□□□□□ -0.43
APOBEC3A-203ENST00000488758 CSRNP3Q8WYN3 585 aa12.36□□□□□ -0.43
APOBEC3A-203ENST00000488758 RUSC2Q8N2Y8 1516 aa12.36□□□□□ -0.43
APOBEC3A-203ENST00000488758 KIF27Q86VH2 1401 aa12.36□□□□□ -0.43
APOBEC3A-203ENST00000488758 ABCA10Q8WWZ4 1543 aa12.33□□□□□ -0.44
APOBEC3A-203ENST00000488758 IFT140Q96RY7 1462 aa12.32□□□□□ -0.44
APOBEC3A-203ENST00000488758 LOC105371045A0A1W2PR82 267 aa12.3□□□□□ -0.44
APOBEC3A-203ENST00000488758 EHMT2Q96KQ7 1210 aa12.29□□□□□ -0.44
APOBEC3A-203ENST00000488758 TDRD9Q8NDG6 1382 aaKnown RBP12.29□□□□□ -0.44
APOBEC3A-203ENST00000488758 RNF39Q9H2S5 420 aa12.28□□□□□ -0.44
APOBEC3A-203ENST00000488758 TARBP1Q13395 1621 aaKnown RBP12.28□□□□□ -0.44
APOBEC3A-203ENST00000488758 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.27□□□□□ -0.45
APOBEC3A-203ENST00000488758 WDR97A6NE52 1622 aa12.26□□□□□ -0.45
APOBEC3A-203ENST00000488758 IGF1RP08069 1367 aa12.25□□□□□ -0.45
APOBEC3A-203ENST00000488758 GAPVD1Q14C86 1478 aa12.25□□□□□ -0.45
APOBEC3A-203ENST00000488758 OSCARQ8IYS5 282 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms