RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 AEBP2Q6ZN18 517 aaPredicted RBP27.37■■□□□ 1.97
USP4-213ENST00000488520 CHIC1Q5VXU3 224 aa26.49■■□□□ 1.83
USP4-213ENST00000488520 SENP3Q9H4L4 574 aaPredicted RBP23.32■■□□□ 1.32
USP4-213ENST00000488520 PHF23Q9BUL5 403 aaPredicted RBP23.23■■□□□ 1.31
USP4-213ENST00000488520 NISCHQ9Y2I1 1504 aa21.75■■□□□ 1.07
USP4-213ENST00000488520 FOXD1Q16676 465 aa21.65■■□□□ 1.06
USP4-213ENST00000488520 PLPPR3Q6T4P5 718 aa21.39■■□□□ 1.01
USP4-213ENST00000488520 PPP6R1Q9UPN7 881 aa20.58■□□□□ 0.89
USP4-213ENST00000488520 ADRA2BP18089 450 aa20.56■□□□□ 0.88
USP4-213ENST00000488520 PIAS4Q8N2W9 510 aaPredicted RBP20.37■□□□□ 0.85
USP4-213ENST00000488520 MSH5O43196 834 aa20.12■□□□□ 0.81
USP4-213ENST00000488520 ABCC9O60706 1549 aa19.88■□□□□ 0.77
USP4-213ENST00000488520 CCDC180Q9P1Z9 1646 aa19.69■□□□□ 0.74
USP4-213ENST00000488520 SCAF1Q9H7N4 1312 aaKnown RBP18.86■□□□□ 0.61
USP4-213ENST00000488520 RB1CC1Q8TDY2 1594 aa18.81■□□□□ 0.6
USP4-213ENST00000488520 POTEDQ86YR6 584 aa18.81■□□□□ 0.6
USP4-213ENST00000488520 PPP4R3CPQ6ZMV5 832 aa18.8■□□□□ 0.6
USP4-213ENST00000488520 DNAJC5BQ9UF47 199 aa18.8■□□□□ 0.6
USP4-213ENST00000488520 MAPK8IP2Q13387 824 aaPredicted RBP18.72■□□□□ 0.59
USP4-213ENST00000488520 UNC13AQ9UPW8 1703 aa18.6■□□□□ 0.57
USP4-213ENST00000488520 NACADO15069 1562 aa18.59■□□□□ 0.57
USP4-213ENST00000488520 DMRT2Q9Y5R5 561 aa18.56■□□□□ 0.56
USP4-213ENST00000488520 DCAF8L2P0C7V8 631 aa18.54■□□□□ 0.56
USP4-213ENST00000488520 PABPN1Q86U42 306 aaKnown RBP eCLIP18.46■□□□□ 0.55
USP4-213ENST00000488520 CNKSR2Q8WXI2 1034 aa18.35■□□□□ 0.53
USP4-213ENST00000488520 BICRAQ9NZM4 1560 aa18.29■□□□□ 0.52
USP4-213ENST00000488520 NCBP3Q53F19 620 aaKnown RBP18.24■□□□□ 0.51
USP4-213ENST00000488520 MYO15BQ96JP2 1530 aa18.18■□□□□ 0.5
USP4-213ENST00000488520 HOXD11P31277 338 aaPredicted RBP18.06■□□□□ 0.48
USP4-213ENST00000488520 RNF216Q9NWF9 866 aaPredicted RBP18.05■□□□□ 0.48
USP4-213ENST00000488520 KCNA4P22459 653 aa18.01■□□□□ 0.47
USP4-213ENST00000488520 CC2D2AQ9P2K1 1620 aa17.98■□□□□ 0.47
USP4-213ENST00000488520 ZCCHC6Q5VYS8 1495 aaKnown RBP17.97■□□□□ 0.47
USP4-213ENST00000488520 SCRIBQ14160 1630 aa17.96■□□□□ 0.47
USP4-213ENST00000488520 NPM3O75607 178 aaKnown RBP17.94■□□□□ 0.46
USP4-213ENST00000488520 DCAF1Q9Y4B6 1507 aa17.9■□□□□ 0.46
USP4-213ENST00000488520 CECR2Q9BXF3 1484 aa17.88■□□□□ 0.45
USP4-213ENST00000488520 SHROOM4Q9ULL8 1493 aa17.87■□□□□ 0.45
USP4-213ENST00000488520 EIF4G1Q04637 1599 aaKnown RBP17.84■□□□□ 0.45
USP4-213ENST00000488520 DCAF8L1A6NGE4 600 aa17.77■□□□□ 0.44
USP4-213ENST00000488520 DNAJC5Q9H3Z4 198 aa17.37■□□□□ 0.37
USP4-213ENST00000488520 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.22■□□□□ 0.35
USP4-213ENST00000488520 RNF39Q9H2S5 420 aa17.18■□□□□ 0.34
USP4-213ENST00000488520 ERCC6Q03468 1493 aa17.16■□□□□ 0.34
USP4-213ENST00000488520 CUX2O14529 1486 aa17.14■□□□□ 0.33
USP4-213ENST00000488520 SLC4A1APQ9BWU0 796 aaKnown RBP17.12■□□□□ 0.33
USP4-213ENST00000488520 NCAPD3P42695 1498 aa17.12■□□□□ 0.33
USP4-213ENST00000488520 SMARCA4P51532 1647 aa17.07■□□□□ 0.32
USP4-213ENST00000488520 ATAD2BQ9ULI0 1458 aa17.07■□□□□ 0.32
USP4-213ENST00000488520 NESP48681 1621 aa17.03■□□□□ 0.32
USP4-213ENST00000488520 SMARCA2P51531 1590 aa17.03■□□□□ 0.32
USP4-213ENST00000488520 HMGXB3Q12766 1538 aa17.01■□□□□ 0.31
USP4-213ENST00000488520 SLC4A2P04920 1241 aa17.01■□□□□ 0.31
USP4-213ENST00000488520 C1QBPQ07021 282 aaKnown RBP16.99■□□□□ 0.31
USP4-213ENST00000488520 CACNB1Q02641 598 aaPredicted RBP16.96■□□□□ 0.31
USP4-213ENST00000488520 BAZ1BQ9UIG0 1483 aaKnown RBP16.92■□□□□ 0.3
USP4-213ENST00000488520 KIF21AQ7Z4S6 1674 aa16.91■□□□□ 0.3
USP4-213ENST00000488520 BAZ1AQ9NRL2 1556 aaPredicted RBP16.91■□□□□ 0.3
USP4-213ENST00000488520 THOC2Q8NI27 1593 aaKnown RBP16.9■□□□□ 0.3
USP4-213ENST00000488520 U3KPZ7 1027 aaPredicted RBP16.9■□□□□ 0.3
USP4-213ENST00000488520 PEG3Q9GZU2 1588 aa16.84■□□□□ 0.29
USP4-213ENST00000488520 LAMC3Q9Y6N6 1575 aa16.84■□□□□ 0.29
USP4-213ENST00000488520 MROH2BQ7Z745 1585 aa16.8■□□□□ 0.28
USP4-213ENST00000488520 PDS5BQ9NTI5 1447 aa16.7■□□□□ 0.26
USP4-213ENST00000488520 FOXD4L1Q9NU39 408 aa16.69■□□□□ 0.26
USP4-213ENST00000488520 WIZO95785 1651 aa16.68■□□□□ 0.26
USP4-213ENST00000488520 TRIM41Q8WV44 630 aa16.63■□□□□ 0.25
USP4-213ENST00000488520 MYCNP04198 464 aaPredicted RBP16.62■□□□□ 0.25
USP4-213ENST00000488520 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.61■□□□□ 0.25
USP4-213ENST00000488520 HNRNPUL2Q1KMD3 747 aaKnown RBP16.61■□□□□ 0.25
USP4-213ENST00000488520 CADPSQ9ULU8 1353 aa16.6■□□□□ 0.25
USP4-213ENST00000488520 MRC2Q9UBG0 1479 aa16.59■□□□□ 0.25
USP4-213ENST00000488520 WDR62O43379 1518 aa16.56■□□□□ 0.24
USP4-213ENST00000488520 ZBTB22O15209 634 aa16.55■□□□□ 0.24
USP4-213ENST00000488520 SAMD1Q6SPF0 538 aaPredicted RBP16.54■□□□□ 0.24
USP4-213ENST00000488520 APLP2Q06481 763 aa16.53■□□□□ 0.24
USP4-213ENST00000488520 CEP164Q9UPV0 1460 aa16.5■□□□□ 0.23
USP4-213ENST00000488520 SPINK5Q9NQ38 1064 aaPredicted RBP16.5■□□□□ 0.23
USP4-213ENST00000488520 CAPN15O75808 1086 aa16.47■□□□□ 0.23
USP4-213ENST00000488520 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
USP4-213ENST00000488520 PRDM2Q13029 1718 aa16.43■□□□□ 0.22
USP4-213ENST00000488520 CFTRP13569 1480 aa16.37■□□□□ 0.21
USP4-213ENST00000488520 URB2Q14146 1524 aaKnown RBP16.35■□□□□ 0.21
USP4-213ENST00000488520 TOP2AP11388 1531 aaKnown RBP16.34■□□□□ 0.21
USP4-213ENST00000488520 OSCARQ8IYS5 282 aa16.33■□□□□ 0.2
USP4-213ENST00000488520 ZNF219Q9P2Y4 722 aaPredicted RBP16.33■□□□□ 0.2
USP4-213ENST00000488520 RSF1Q96T23 1441 aaPredicted RBP16.31■□□□□ 0.2
USP4-213ENST00000488520 TRHP20396 242 aaPredicted RBP16.31■□□□□ 0.2
USP4-213ENST00000488520 EHMT2Q96KQ7 1210 aa16.27■□□□□ 0.2
USP4-213ENST00000488520 RIMBP3CA6NJZ7 1639 aa16.26■□□□□ 0.19
USP4-213ENST00000488520 RIMBP3BA6NNM3 1639 aa16.26■□□□□ 0.19
USP4-213ENST00000488520 RIMBP3Q9UFD9 1639 aa16.26■□□□□ 0.19
USP4-213ENST00000488520 DSG3P32926 999 aa16.25■□□□□ 0.19
USP4-213ENST00000488520 CSRNP3Q8WYN3 585 aa16.23■□□□□ 0.19
USP4-213ENST00000488520 ZNF608Q9ULD9 1512 aaPredicted RBP16.19■□□□□ 0.18
USP4-213ENST00000488520 CCDC88BA6NC98 1476 aa16.16■□□□□ 0.18
USP4-213ENST00000488520 CHD1O14646 1710 aa16.16■□□□□ 0.18
USP4-213ENST00000488520 ATXN8OSP0DMR3 200 aa16.14■□□□□ 0.17
USP4-213ENST00000488520 ATF5Q9Y2D1 282 aaPredicted RBP16.14■□□□□ 0.17
USP4-213ENST00000488520 IFT140Q96RY7 1462 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 155.5 ms