RNA–Protein interactions for RNA: ENST00000487244.5

UBE4B-209, Transcript of ubiquitination factor E4B, humanhuman

TSL 1 (best)

Gene UBE4B, Length 818 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-209ENST00000487244 AEBP2Q6ZN18 517 aaPredicted RBP20.58■□□□□ 0.89
UBE4B-209ENST00000487244 CHIC1Q5VXU3 224 aa19.97■□□□□ 0.79
UBE4B-209ENST00000487244 NISCHQ9Y2I1 1504 aa17.6■□□□□ 0.41
UBE4B-209ENST00000487244 SENP3Q9H4L4 574 aaPredicted RBP17.57■□□□□ 0.4
UBE4B-209ENST00000487244 PHF23Q9BUL5 403 aaPredicted RBP17.52■□□□□ 0.4
UBE4B-209ENST00000487244 FOXD1Q16676 465 aa16.29■□□□□ 0.2
UBE4B-209ENST00000487244 PLPPR3Q6T4P5 718 aa16.18■□□□□ 0.18
UBE4B-209ENST00000487244 CCDC180Q9P1Z9 1646 aa15.68■□□□□ 0.1
UBE4B-209ENST00000487244 ADRA2BP18089 450 aa15.53■□□□□ 0.08
UBE4B-209ENST00000487244 PPP6R1Q9UPN7 881 aa15.52■□□□□ 0.08
UBE4B-209ENST00000487244 ABCC9O60706 1549 aa15.4■□□□□ 0.06
UBE4B-209ENST00000487244 PIAS4Q8N2W9 510 aaPredicted RBP15.35■□□□□ 0.05
UBE4B-209ENST00000487244 MSH5O43196 834 aa15.13■□□□□ 0.01
UBE4B-209ENST00000487244 RB1CC1Q8TDY2 1594 aa14.76□□□□□ -0.05
UBE4B-209ENST00000487244 NACADO15069 1562 aa14.72□□□□□ -0.05
UBE4B-209ENST00000487244 DCAF8L2P0C7V8 631 aa14.68□□□□□ -0.06
UBE4B-209ENST00000487244 ZCCHC6Q5VYS8 1495 aaKnown RBP14.66□□□□□ -0.06
UBE4B-209ENST00000487244 MYO15BQ96JP2 1530 aa14.6□□□□□ -0.07
UBE4B-209ENST00000487244 UNC13AQ9UPW8 1703 aa14.55□□□□□ -0.08
UBE4B-209ENST00000487244 DCAF1Q9Y4B6 1507 aa14.52□□□□□ -0.08
UBE4B-209ENST00000487244 BICRAQ9NZM4 1560 aa14.38□□□□□ -0.11
UBE4B-209ENST00000487244 PABPN1Q86U42 306 aaKnown RBP eCLIP14.37□□□□□ -0.11
UBE4B-209ENST00000487244 SCRIBQ14160 1630 aa14.35□□□□□ -0.11
UBE4B-209ENST00000487244 SCAF1Q9H7N4 1312 aaKnown RBP14.28□□□□□ -0.12
UBE4B-209ENST00000487244 PPP4R3CPQ6ZMV5 832 aa14.22□□□□□ -0.13
UBE4B-209ENST00000487244 DNAJC5BQ9UF47 199 aa14.19□□□□□ -0.14
UBE4B-209ENST00000487244 MAPK8IP2Q13387 824 aaPredicted RBP14.14□□□□□ -0.15
UBE4B-209ENST00000487244 SHROOM4Q9ULL8 1493 aa14.12□□□□□ -0.15
UBE4B-209ENST00000487244 POTEDQ86YR6 584 aa14.05□□□□□ -0.16
UBE4B-209ENST00000487244 EIF4G1Q04637 1599 aaKnown RBP13.97□□□□□ -0.17
UBE4B-209ENST00000487244 DMRT2Q9Y5R5 561 aa13.97□□□□□ -0.17
UBE4B-209ENST00000487244 CC2D2AQ9P2K1 1620 aa13.94□□□□□ -0.18
UBE4B-209ENST00000487244 CNKSR2Q8WXI2 1034 aa13.87□□□□□ -0.19
UBE4B-209ENST00000487244 NCBP3Q53F19 620 aaKnown RBP13.85□□□□□ -0.19
UBE4B-209ENST00000487244 CECR2Q9BXF3 1484 aa13.82□□□□□ -0.2
UBE4B-209ENST00000487244 SMARCA4P51532 1647 aa13.69□□□□□ -0.22
UBE4B-209ENST00000487244 KCNA4P22459 653 aa13.67□□□□□ -0.22
UBE4B-209ENST00000487244 BAZ1AQ9NRL2 1556 aaPredicted RBP13.63□□□□□ -0.23
UBE4B-209ENST00000487244 RNF216Q9NWF9 866 aaPredicted RBP13.63□□□□□ -0.23
UBE4B-209ENST00000487244 HOXD11P31277 338 aaPredicted RBP13.6□□□□□ -0.23
UBE4B-209ENST00000487244 ATAD2BQ9ULI0 1458 aa13.6□□□□□ -0.23
UBE4B-209ENST00000487244 MROH2BQ7Z745 1585 aa13.59□□□□□ -0.23
UBE4B-209ENST00000487244 NPM3O75607 178 aaKnown RBP13.58□□□□□ -0.24
UBE4B-209ENST00000487244 NCAPD3P42695 1498 aa13.57□□□□□ -0.24
UBE4B-209ENST00000487244 SMARCA2P51531 1590 aa13.57□□□□□ -0.24
UBE4B-209ENST00000487244 PEG3Q9GZU2 1588 aa13.54□□□□□ -0.24
UBE4B-209ENST00000487244 HMGXB3Q12766 1538 aa13.53□□□□□ -0.24
UBE4B-209ENST00000487244 BAZ1BQ9UIG0 1483 aaKnown RBP13.48□□□□□ -0.25
UBE4B-209ENST00000487244 WIZO95785 1651 aa13.47□□□□□ -0.25
UBE4B-209ENST00000487244 DCAF8L1A6NGE4 600 aa13.45□□□□□ -0.26
UBE4B-209ENST00000487244 RSF1Q96T23 1441 aaPredicted RBP13.39□□□□□ -0.27
UBE4B-209ENST00000487244 NESP48681 1621 aa13.34□□□□□ -0.27
UBE4B-209ENST00000487244 TOP2AP11388 1531 aaKnown RBP13.28□□□□□ -0.28
UBE4B-209ENST00000487244 LAMC3Q9Y6N6 1575 aa13.24□□□□□ -0.29
UBE4B-209ENST00000487244 ERCC6Q03468 1493 aa13.24□□□□□ -0.29
UBE4B-209ENST00000487244 KIF21AQ7Z4S6 1674 aa13.21□□□□□ -0.3
UBE4B-209ENST00000487244 CADPSQ9ULU8 1353 aa13.17□□□□□ -0.3
UBE4B-209ENST00000487244 THOC2Q8NI27 1593 aaKnown RBP13.15□□□□□ -0.3
UBE4B-209ENST00000487244 CCDC88BA6NC98 1476 aa13.12□□□□□ -0.31
UBE4B-209ENST00000487244 PDS5BQ9NTI5 1447 aa13.11□□□□□ -0.31
UBE4B-209ENST00000487244 CUX2O14529 1486 aa13.1□□□□□ -0.31
UBE4B-209ENST00000487244 CFTRP13569 1480 aa13.1□□□□□ -0.31
UBE4B-209ENST00000487244 PRDM2Q13029 1718 aa13.08□□□□□ -0.32
UBE4B-209ENST00000487244 FANCD2Q9BXW9 1451 aa13.05□□□□□ -0.32
UBE4B-209ENST00000487244 CEP164Q9UPV0 1460 aa13.04□□□□□ -0.32
UBE4B-209ENST00000487244 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.03□□□□□ -0.32
UBE4B-209ENST00000487244 MRC2Q9UBG0 1479 aa13.03□□□□□ -0.32
UBE4B-209ENST00000487244 SLC4A1APQ9BWU0 796 aaKnown RBP13.02□□□□□ -0.33
UBE4B-209ENST00000487244 WDR62O43379 1518 aa13.01□□□□□ -0.33
UBE4B-209ENST00000487244 SUPT5HO00267 1087 aaKnown RBP12.99□□□□□ -0.33
UBE4B-209ENST00000487244 URB2Q14146 1524 aaKnown RBP12.96□□□□□ -0.33
UBE4B-209ENST00000487244 RNF39Q9H2S5 420 aa12.91□□□□□ -0.34
UBE4B-209ENST00000487244 TOPBP1Q92547 1522 aa12.85□□□□□ -0.35
UBE4B-209ENST00000487244 SLC4A2P04920 1241 aa12.84□□□□□ -0.35
UBE4B-209ENST00000487244 DNMBPQ6XZF7 1577 aa12.83□□□□□ -0.36
UBE4B-209ENST00000487244 C1QBPQ07021 282 aaKnown RBP12.79□□□□□ -0.36
UBE4B-209ENST00000487244 ABCC8Q09428 1581 aa12.77□□□□□ -0.37
UBE4B-209ENST00000487244 CACNB1Q02641 598 aaPredicted RBP12.76□□□□□ -0.37
UBE4B-209ENST00000487244 CUX1P39880 1505 aa12.76□□□□□ -0.37
UBE4B-209ENST00000487244 DNAJC5Q9H3Z4 198 aa12.75□□□□□ -0.37
UBE4B-209ENST00000487244 ZNF608Q9ULD9 1512 aaPredicted RBP12.75□□□□□ -0.37
UBE4B-209ENST00000487244 TARBP1Q13395 1621 aaKnown RBP12.74□□□□□ -0.37
UBE4B-209ENST00000487244 IFT140Q96RY7 1462 aa12.74□□□□□ -0.37
UBE4B-209ENST00000487244 POLA1P09884 1462 aaPredicted RBP12.73□□□□□ -0.37
UBE4B-209ENST00000487244 U3KPZ7 1027 aaPredicted RBP12.73□□□□□ -0.37
UBE4B-209ENST00000487244 EIF4G3O43432 1585 aaKnown RBP12.71□□□□□ -0.37
UBE4B-209ENST00000487244 FGD5Q6ZNL6 1462 aa12.71□□□□□ -0.38
UBE4B-209ENST00000487244 RAD54L2Q9Y4B4 1467 aa12.7□□□□□ -0.38
UBE4B-209ENST00000487244 SOGA1O94964 1423 aa12.65□□□□□ -0.38
UBE4B-209ENST00000487244 FOXD4L1Q9NU39 408 aa12.65□□□□□ -0.38
UBE4B-209ENST00000487244 WDR97A6NE52 1622 aa12.65□□□□□ -0.38
UBE4B-209ENST00000487244 AQRO60306 1485 aaKnown RBP eCLIP12.65□□□□□ -0.388e-7■■■■□ 19.9
UBE4B-209ENST00000487244 SYNJ1O43426 1573 aa12.64□□□□□ -0.39
UBE4B-209ENST00000487244 BIVM-ERCC5R4GMW8 1640 aa12.63□□□□□ -0.39
UBE4B-209ENST00000487244 TOP2BQ02880 1626 aa12.62□□□□□ -0.39
UBE4B-209ENST00000487244 TDRD9Q8NDG6 1382 aaKnown RBP12.61□□□□□ -0.39
UBE4B-209ENST00000487244 WRNQ14191 1432 aaPredicted RBP eCLIP12.61□□□□□ -0.39
UBE4B-209ENST00000487244 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.59□□□□□ -0.39
UBE4B-209ENST00000487244 HNRNPUL2Q1KMD3 747 aaKnown RBP12.59□□□□□ -0.39
UBE4B-209ENST00000487244 CHD1O14646 1710 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms