RNA–Protein interactions for RNA: ENST00000484751.1

TMEM248-206, Transcript of transmembrane protein 248, humanhuman

TSL 2

Gene TMEM248, Length 739 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-206ENST00000484751 NISCHQ9Y2I1 1504 aa18■□□□□ 0.47
TMEM248-206ENST00000484751 AEBP2Q6ZN18 517 aaPredicted RBP16.9■□□□□ 0.3
TMEM248-206ENST00000484751 CHIC1Q5VXU3 224 aa15.56■□□□□ 0.08
TMEM248-206ENST00000484751 CCDC180Q9P1Z9 1646 aa15.47■□□□□ 0.07
TMEM248-206ENST00000484751 ZCCHC6Q5VYS8 1495 aaKnown RBP15.24■□□□□ 0.03
TMEM248-206ENST00000484751 SHROOM4Q9ULL8 1493 aa15.01□□□□□ -0.01
TMEM248-206ENST00000484751 DCAF1Q9Y4B6 1507 aa14.95□□□□□ -0.02
TMEM248-206ENST00000484751 SUPT5HO00267 1087 aaKnown RBP14.76□□□□□ -0.05
TMEM248-206ENST00000484751 DCAF8L2P0C7V8 631 aa14.71□□□□□ -0.05
TMEM248-206ENST00000484751 MYO15BQ96JP2 1530 aa14.59□□□□□ -0.07
TMEM248-206ENST00000484751 POTEDQ86YR6 584 aa14.56□□□□□ -0.08
TMEM248-206ENST00000484751 SENP3Q9H4L4 574 aaPredicted RBP14.38□□□□□ -0.11
TMEM248-206ENST00000484751 ABCC9O60706 1549 aa14.37□□□□□ -0.11
TMEM248-206ENST00000484751 NACADO15069 1562 aa14.32□□□□□ -0.12
TMEM248-206ENST00000484751 SCRIBQ14160 1630 aa14.25□□□□□ -0.13
TMEM248-206ENST00000484751 RSF1Q96T23 1441 aaPredicted RBP14.16□□□□□ -0.14
TMEM248-206ENST00000484751 PHF23Q9BUL5 403 aaPredicted RBP14.15□□□□□ -0.14
TMEM248-206ENST00000484751 RB1CC1Q8TDY2 1594 aa14.09□□□□□ -0.15
TMEM248-206ENST00000484751 TRIM41Q8WV44 630 aa13.91□□□□□ -0.18
TMEM248-206ENST00000484751 BAZ1AQ9NRL2 1556 aaPredicted RBP13.91□□□□□ -0.18
TMEM248-206ENST00000484751 HRCP23327 699 aa13.9□□□□□ -0.18
TMEM248-206ENST00000484751 MROH2BQ7Z745 1585 aa13.88□□□□□ -0.19
TMEM248-206ENST00000484751 CECR2Q9BXF3 1484 aa13.87□□□□□ -0.19
TMEM248-206ENST00000484751 PCGF6Q9BYE7 350 aa13.82□□□□□ -0.2
TMEM248-206ENST00000484751 LOC105371045A0A1W2PR82 267 aa13.8□□□□□ -0.2
TMEM248-206ENST00000484751 TRIM26Q12899 539 aaPredicted RBP13.77□□□□□ -0.21
TMEM248-206ENST00000484751 WIZO95785 1651 aa13.75□□□□□ -0.21
TMEM248-206ENST00000484751 TOP2AP11388 1531 aaKnown RBP13.74□□□□□ -0.21
TMEM248-206ENST00000484751 SMARCA4P51532 1647 aa13.71□□□□□ -0.22
TMEM248-206ENST00000484751 FOXD1Q16676 465 aa13.66□□□□□ -0.22
TMEM248-206ENST00000484751 EIF4G1Q04637 1599 aaKnown RBP13.64□□□□□ -0.23
TMEM248-206ENST00000484751 ZEB1P37275 1124 aaPredicted RBP13.63□□□□□ -0.23
TMEM248-206ENST00000484751 UNC13AQ9UPW8 1703 aa13.59□□□□□ -0.23
TMEM248-206ENST00000484751 FAM9AQ8IZU1 332 aaPredicted RBP13.58□□□□□ -0.24
TMEM248-206ENST00000484751 SMARCA2P51531 1590 aa13.58□□□□□ -0.24
TMEM248-206ENST00000484751 CCDC88BA6NC98 1476 aa13.57□□□□□ -0.24
TMEM248-206ENST00000484751 EEA1Q15075 1411 aa13.56□□□□□ -0.24
TMEM248-206ENST00000484751 PEG3Q9GZU2 1588 aa13.54□□□□□ -0.24
TMEM248-206ENST00000484751 BICRAQ9NZM4 1560 aa13.5□□□□□ -0.25
TMEM248-206ENST00000484751 PABPN1Q86U42 306 aaKnown RBP eCLIP13.4□□□□□ -0.26
TMEM248-206ENST00000484751 ABCC8Q09428 1581 aa13.4□□□□□ -0.26
TMEM248-206ENST00000484751 WRNQ14191 1432 aaPredicted RBP eCLIP13.39□□□□□ -0.27
TMEM248-206ENST00000484751 TNIKQ9UKE5 1360 aa13.39□□□□□ -0.27
TMEM248-206ENST00000484751 BAZ1BQ9UIG0 1483 aaKnown RBP13.37□□□□□ -0.27
TMEM248-206ENST00000484751 ATAD2BQ9ULI0 1458 aa13.37□□□□□ -0.27
TMEM248-206ENST00000484751 CSRNP3Q8WYN3 585 aa13.35□□□□□ -0.27
TMEM248-206ENST00000484751 GOLGA3Q08378 1498 aa13.34□□□□□ -0.27
TMEM248-206ENST00000484751 PPARGC1BQ86YN6 1023 aaKnown RBP13.33□□□□□ -0.28
TMEM248-206ENST00000484751 EHMT2Q96KQ7 1210 aa13.32□□□□□ -0.28
TMEM248-206ENST00000484751 CEP162Q5TB80 1403 aa13.31□□□□□ -0.28
TMEM248-206ENST00000484751 SOGA1O94964 1423 aa13.29□□□□□ -0.28
TMEM248-206ENST00000484751 CEP164Q9UPV0 1460 aa13.29□□□□□ -0.28
TMEM248-206ENST00000484751 KIF21BO75037 1637 aa13.24□□□□□ -0.29
TMEM248-206ENST00000484751 UBTFP17480 764 aaKnown RBP13.24□□□□□ -0.29
TMEM248-206ENST00000484751 HMGXB3Q12766 1538 aa13.23□□□□□ -0.29
TMEM248-206ENST00000484751 SYNJ1O43426 1573 aa13.2□□□□□ -0.3
TMEM248-206ENST00000484751 NCAPD3P42695 1498 aa13.19□□□□□ -0.3
TMEM248-206ENST00000484751 TOP2BQ02880 1626 aa13.15□□□□□ -0.3
TMEM248-206ENST00000484751 CCER1Q8TC90 406 aaPredicted RBP13.15□□□□□ -0.3
TMEM248-206ENST00000484751 RUSC2Q8N2Y8 1516 aa13.14□□□□□ -0.31
TMEM248-206ENST00000484751 BIVM-ERCC5R4GMW8 1640 aa13.12□□□□□ -0.31
TMEM248-206ENST00000484751 CLIP1P30622 1438 aa13.12□□□□□ -0.31
TMEM248-206ENST00000484751 APLP2Q06481 763 aa13.09□□□□□ -0.31
TMEM248-206ENST00000484751 ERICH3Q5RHP9 1530 aa13.08□□□□□ -0.31
TMEM248-206ENST00000484751 VPS8Q8N3P4 1428 aa13.08□□□□□ -0.32
TMEM248-206ENST00000484751 CFTRP13569 1480 aa13.04□□□□□ -0.32
TMEM248-206ENST00000484751 KIF27Q86VH2 1401 aa13.03□□□□□ -0.32
TMEM248-206ENST00000484751 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.02□□□□□ -0.33
TMEM248-206ENST00000484751 MSH5O43196 834 aa13.01□□□□□ -0.33
TMEM248-206ENST00000484751 RAPGEF2Q9Y4G8 1499 aa13.01□□□□□ -0.33
TMEM248-206ENST00000484751 PRXQ9BXM0 1461 aa13□□□□□ -0.33
TMEM248-206ENST00000484751 CUX1P39880 1505 aa12.96□□□□□ -0.33
TMEM248-206ENST00000484751 PRDM2Q13029 1718 aa12.94□□□□□ -0.34
TMEM248-206ENST00000484751 TTBK1Q5TCY1 1321 aaPredicted RBP12.92□□□□□ -0.34
TMEM248-206ENST00000484751 CADPSQ9ULU8 1353 aa12.91□□□□□ -0.34
TMEM248-206ENST00000484751 CLSPNQ9HAW4 1339 aa12.87□□□□□ -0.35
TMEM248-206ENST00000484751 ARAP1Q96P48 1450 aa12.85□□□□□ -0.35
TMEM248-206ENST00000484751 DIEXFQ68CQ4 756 aaKnown RBP12.83□□□□□ -0.36
TMEM248-206ENST00000484751 CUX2O14529 1486 aa12.82□□□□□ -0.36
TMEM248-206ENST00000484751 ZNF316A6NFI3 1004 aaPredicted RBP12.81□□□□□ -0.36
TMEM248-206ENST00000484751 CENPBP07199 599 aaPredicted RBP12.81□□□□□ -0.36
TMEM248-206ENST00000484751 HNRNPUL2Q1KMD3 747 aaKnown RBP12.81□□□□□ -0.36
TMEM248-206ENST00000484751 MAP3K1Q13233 1512 aa12.79□□□□□ -0.36
TMEM248-206ENST00000484751 IGF1RP08069 1367 aa12.78□□□□□ -0.36
TMEM248-206ENST00000484751 RANGAP1P46060 587 aaPredicted RBP12.77□□□□□ -0.37
TMEM248-206ENST00000484751 RRBP1Q9P2E9 1410 aaKnown RBP12.77□□□□□ -0.37
TMEM248-206ENST00000484751 FGD5Q6ZNL6 1462 aa12.77□□□□□ -0.37
TMEM248-206ENST00000484751 CC2D2AQ9P2K1 1620 aa12.77□□□□□ -0.37
TMEM248-206ENST00000484751 CARMIL1Q5VZK9 1371 aa12.76□□□□□ -0.37
TMEM248-206ENST00000484751 ARHGAP35Q9NRY4 1499 aa12.76□□□□□ -0.37
TMEM248-206ENST00000484751 FHAD1B1AJZ9 1412 aa12.75□□□□□ -0.37
TMEM248-206ENST00000484751 FANCD2Q9BXW9 1451 aa12.75□□□□□ -0.37
TMEM248-206ENST00000484751 DNMBPQ6XZF7 1577 aa12.74□□□□□ -0.37
TMEM248-206ENST00000484751 PELP1Q8IZL8 1130 aaKnown RBP12.72□□□□□ -0.37
TMEM248-206ENST00000484751 CCNB3Q8WWL7 1395 aa12.7□□□□□ -0.38
TMEM248-206ENST00000484751 ABCA10Q8WWZ4 1543 aa12.7□□□□□ -0.38
TMEM248-206ENST00000484751 ACIN1Q9UKV3 1341 aaKnown RBP12.69□□□□□ -0.38
TMEM248-206ENST00000484751 EFCAB5A4FU69 1503 aa12.68□□□□□ -0.38
TMEM248-206ENST00000484751 CUL7Q14999 1698 aa12.67□□□□□ -0.38
TMEM248-206ENST00000484751 LAMC3Q9Y6N6 1575 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms