RNA–Protein interactions for RNA: ENST00000482933.1

COL21A1-209, Transcript of collagen type XXI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL21A1, Length 1,413 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1-209ENST00000482933 AEBP2Q6ZN18 517 aaPredicted RBP36.62■■■■□ 3.45
COL21A1-209ENST00000482933 CHIC1Q5VXU3 224 aa35.12■■■■□ 3.21
COL21A1-209ENST00000482933 NISCHQ9Y2I1 1504 aa31.58■■■□□ 2.65
COL21A1-209ENST00000482933 SENP3Q9H4L4 574 aaPredicted RBP31.39■■■□□ 2.62
COL21A1-209ENST00000482933 PHF23Q9BUL5 403 aaPredicted RBP30.9■■■□□ 2.54
COL21A1-209ENST00000482933 FOXD1Q16676 465 aa29.09■■■□□ 2.25
COL21A1-209ENST00000482933 CCDC180Q9P1Z9 1646 aa28.24■■■□□ 2.11
COL21A1-209ENST00000482933 PLPPR3Q6T4P5 718 aa28.23■■■□□ 2.11
COL21A1-209ENST00000482933 ABCC9O60706 1549 aa27.98■■■□□ 2.07
COL21A1-209ENST00000482933 PIAS4Q8N2W9 510 aaPredicted RBP27.3■■□□□ 1.96
COL21A1-209ENST00000482933 PPP6R1Q9UPN7 881 aa27.3■■□□□ 1.96
COL21A1-209ENST00000482933 MSH5O43196 834 aa27.29■■□□□ 1.96
COL21A1-209ENST00000482933 ADRA2BP18089 450 aa27.24■■□□□ 1.95
COL21A1-209ENST00000482933 RB1CC1Q8TDY2 1594 aa26.79■■□□□ 1.88
COL21A1-209ENST00000482933 NACADO15069 1562 aa26.66■■□□□ 1.86
COL21A1-209ENST00000482933 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
COL21A1-209ENST00000482933 MYO15BQ96JP2 1530 aa26.38■■□□□ 1.81
COL21A1-209ENST00000482933 ZCCHC6Q5VYS8 1495 aaKnown RBP26.22■■□□□ 1.79
COL21A1-209ENST00000482933 DCAF1Q9Y4B6 1507 aa26.13■■□□□ 1.77
COL21A1-209ENST00000482933 UNC13AQ9UPW8 1703 aa26.12■■□□□ 1.77
COL21A1-209ENST00000482933 POTEDQ86YR6 584 aa26.11■■□□□ 1.77
COL21A1-209ENST00000482933 PABPN1Q86U42 306 aaKnown RBP eCLIP26.09■■□□□ 1.77
COL21A1-209ENST00000482933 DNAJC5BQ9UF47 199 aa26■■□□□ 1.75
COL21A1-209ENST00000482933 BICRAQ9NZM4 1560 aa25.93■■□□□ 1.74
COL21A1-209ENST00000482933 SCRIBQ14160 1630 aa25.72■■□□□ 1.71
COL21A1-209ENST00000482933 SHROOM4Q9ULL8 1493 aa25.69■■□□□ 1.7
COL21A1-209ENST00000482933 EIF4G1Q04637 1599 aaKnown RBP25.31■■□□□ 1.64
COL21A1-209ENST00000482933 CC2D2AQ9P2K1 1620 aa25.3■■□□□ 1.64
COL21A1-209ENST00000482933 CECR2Q9BXF3 1484 aa25.2■■□□□ 1.62
COL21A1-209ENST00000482933 SCAF1Q9H7N4 1312 aaKnown RBP25.15■■□□□ 1.62
COL21A1-209ENST00000482933 MAPK8IP2Q13387 824 aaPredicted RBP24.92■■□□□ 1.58
COL21A1-209ENST00000482933 DMRT2Q9Y5R5 561 aa24.88■■□□□ 1.57
COL21A1-209ENST00000482933 PPP4R3CPQ6ZMV5 832 aa24.69■■□□□ 1.54
COL21A1-209ENST00000482933 NCAPD3P42695 1498 aa24.6■■□□□ 1.53
COL21A1-209ENST00000482933 SMARCA4P51532 1647 aa24.57■■□□□ 1.52
COL21A1-209ENST00000482933 ATAD2BQ9ULI0 1458 aa24.55■■□□□ 1.52
COL21A1-209ENST00000482933 SMARCA2P51531 1590 aa24.52■■□□□ 1.52
COL21A1-209ENST00000482933 BAZ1AQ9NRL2 1556 aaPredicted RBP24.52■■□□□ 1.52
COL21A1-209ENST00000482933 HMGXB3Q12766 1538 aa24.44■■□□□ 1.5
COL21A1-209ENST00000482933 PEG3Q9GZU2 1588 aa24.35■■□□□ 1.49
COL21A1-209ENST00000482933 BAZ1BQ9UIG0 1483 aaKnown RBP24.33■■□□□ 1.49
COL21A1-209ENST00000482933 MROH2BQ7Z745 1585 aa24.31■■□□□ 1.48
COL21A1-209ENST00000482933 CNKSR2Q8WXI2 1034 aa24.25■■□□□ 1.47
COL21A1-209ENST00000482933 ERCC6Q03468 1493 aa24.18■■□□□ 1.46
COL21A1-209ENST00000482933 NESP48681 1621 aa24.08■■□□□ 1.45
COL21A1-209ENST00000482933 HOXD11P31277 338 aaPredicted RBP24.07■■□□□ 1.44
COL21A1-209ENST00000482933 CUX2O14529 1486 aa24.06■■□□□ 1.44
COL21A1-209ENST00000482933 WIZO95785 1651 aa24.03■■□□□ 1.44
COL21A1-209ENST00000482933 LAMC3Q9Y6N6 1575 aa24.02■■□□□ 1.44
COL21A1-209ENST00000482933 RNF216Q9NWF9 866 aaPredicted RBP23.97■■□□□ 1.43
COL21A1-209ENST00000482933 NCBP3Q53F19 620 aaKnown RBP23.94■■□□□ 1.42
COL21A1-209ENST00000482933 RSF1Q96T23 1441 aaPredicted RBP23.9■■□□□ 1.42
COL21A1-209ENST00000482933 PDS5BQ9NTI5 1447 aa23.89■■□□□ 1.41
COL21A1-209ENST00000482933 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
COL21A1-209ENST00000482933 THOC2Q8NI27 1593 aaKnown RBP23.81■■□□□ 1.4
COL21A1-209ENST00000482933 KIF21AQ7Z4S6 1674 aa23.8■■□□□ 1.4
COL21A1-209ENST00000482933 DCAF8L1A6NGE4 600 aa23.79■■□□□ 1.4
COL21A1-209ENST00000482933 TOP2AP11388 1531 aaKnown RBP23.77■■□□□ 1.4
COL21A1-209ENST00000482933 DNAJC5Q9H3Z4 198 aa23.76■■□□□ 1.39
COL21A1-209ENST00000482933 CFTRP13569 1480 aa23.64■■□□□ 1.37
COL21A1-209ENST00000482933 MRC2Q9UBG0 1479 aa23.64■■□□□ 1.37
COL21A1-209ENST00000482933 CEP164Q9UPV0 1460 aa23.6■■□□□ 1.37
COL21A1-209ENST00000482933 FANCD2Q9BXW9 1451 aa23.58■■□□□ 1.37
COL21A1-209ENST00000482933 WDR62O43379 1518 aa23.56■■□□□ 1.36
COL21A1-209ENST00000482933 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
COL21A1-209ENST00000482933 NPM3O75607 178 aaKnown RBP23.46■■□□□ 1.35
COL21A1-209ENST00000482933 PRDM2Q13029 1718 aa23.42■■□□□ 1.34
COL21A1-209ENST00000482933 URB2Q14146 1524 aaKnown RBP23.35■■□□□ 1.33
COL21A1-209ENST00000482933 RNF39Q9H2S5 420 aa23.23■■□□□ 1.31
COL21A1-209ENST00000482933 CACNB1Q02641 598 aaPredicted RBP23.2■■□□□ 1.3
COL21A1-209ENST00000482933 ABCC8Q09428 1581 aa23.19■■□□□ 1.3
COL21A1-209ENST00000482933 KCNA4P22459 653 aa23.16■■□□□ 1.3
COL21A1-209ENST00000482933 TOPBP1Q92547 1522 aa23.16■■□□□ 1.3
COL21A1-209ENST00000482933 IFT140Q96RY7 1462 aa23.13■■□□□ 1.29
COL21A1-209ENST00000482933 DNMBPQ6XZF7 1577 aa23.11■■□□□ 1.29
COL21A1-209ENST00000482933 SUPT5HO00267 1087 aaKnown RBP23.05■■□□□ 1.28
COL21A1-209ENST00000482933 OSCARQ8IYS5 282 aa23.02■■□□□ 1.28
COL21A1-209ENST00000482933 ZNF608Q9ULD9 1512 aaPredicted RBP23.01■■□□□ 1.27
COL21A1-209ENST00000482933 C1QBPQ07021 282 aaKnown RBP22.98■■□□□ 1.27
COL21A1-209ENST00000482933 POLA1P09884 1462 aaPredicted RBP22.93■■□□□ 1.26
COL21A1-209ENST00000482933 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.91■■□□□ 1.26
COL21A1-209ENST00000482933 TARBP1Q13395 1621 aaKnown RBP22.91■■□□□ 1.26
COL21A1-209ENST00000482933 EIF4G3O43432 1585 aaKnown RBP22.91■■□□□ 1.26
COL21A1-209ENST00000482933 SOGA1O94964 1423 aa22.86■■□□□ 1.25
COL21A1-209ENST00000482933 AQRO60306 1485 aaKnown RBP eCLIP22.85■■□□□ 1.25
COL21A1-209ENST00000482933 RAD54L2Q9Y4B4 1467 aa22.83■■□□□ 1.25
COL21A1-209ENST00000482933 FGD5Q6ZNL6 1462 aa22.82■■□□□ 1.24
COL21A1-209ENST00000482933 CUX1P39880 1505 aa22.82■■□□□ 1.24
COL21A1-209ENST00000482933 TRIM41Q8WV44 630 aa22.82■■□□□ 1.24
COL21A1-209ENST00000482933 WDR97A6NE52 1622 aa22.77■■□□□ 1.24
COL21A1-209ENST00000482933 TDRD9Q8NDG6 1382 aaKnown RBP22.75■■□□□ 1.23
COL21A1-209ENST00000482933 FBLN2P98095 1184 aa22.69■■□□□ 1.22
COL21A1-209ENST00000482933 CHD1O14646 1710 aa22.69■■□□□ 1.22
COL21A1-209ENST00000482933 RIMBP3CA6NJZ7 1639 aa22.64■■□□□ 1.21
COL21A1-209ENST00000482933 RIMBP3BA6NNM3 1639 aa22.64■■□□□ 1.21
COL21A1-209ENST00000482933 RIMBP3Q9UFD9 1639 aa22.64■■□□□ 1.21
COL21A1-209ENST00000482933 SNAPC4Q5SXM2 1469 aa22.64■■□□□ 1.21
COL21A1-209ENST00000482933 GRIN2BQ13224 1484 aa22.63■■□□□ 1.21
COL21A1-209ENST00000482933 MAGI1Q96QZ7 1491 aaPredicted RBP22.61■■□□□ 1.21
COL21A1-209ENST00000482933 ARHGEF11O15085 1522 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms