RNA–Protein interactions for RNA: ENST00000478139.1

SYCP3-204, Transcript of synaptonemal complex protein 3, humanhuman

TSL 2

Gene SYCP3, Length 3,690 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYCP3-204ENST00000478139 NISCHQ9Y2I1 1504 aa16.17■□□□□ 0.18
SYCP3-204ENST00000478139 DCAF8L2P0C7V8 631 aa14.75□□□□□ -0.05
SYCP3-204ENST00000478139 ABCC9O60706 1549 aa14.22□□□□□ -0.13
SYCP3-204ENST00000478139 CCDC180Q9P1Z9 1646 aa13.99□□□□□ -0.17
SYCP3-204ENST00000478139 SHROOM4Q9ULL8 1493 aa13.68□□□□□ -0.22
SYCP3-204ENST00000478139 PABPN1Q86U42 306 aaKnown RBP eCLIP13.58□□□□□ -0.24
SYCP3-204ENST00000478139 RB1CC1Q8TDY2 1594 aa13.48□□□□□ -0.25
SYCP3-204ENST00000478139 NACADO15069 1562 aa13.4□□□□□ -0.26
SYCP3-204ENST00000478139 ZCCHC6Q5VYS8 1495 aaKnown RBP13.39□□□□□ -0.27
SYCP3-204ENST00000478139 SUPT5HO00267 1087 aaKnown RBP13.25□□□□□ -0.29
SYCP3-204ENST00000478139 SCRIBQ14160 1630 aa13.21□□□□□ -0.3
SYCP3-204ENST00000478139 DCAF1Q9Y4B6 1507 aa13.14□□□□□ -0.31
SYCP3-204ENST00000478139 MYO15BQ96JP2 1530 aa13.1□□□□□ -0.31
SYCP3-204ENST00000478139 CECR2Q9BXF3 1484 aa12.69□□□□□ -0.38
SYCP3-204ENST00000478139 DNAJC5BQ9UF47 199 aa12.66□□□□□ -0.38
SYCP3-204ENST00000478139 BAZ1AQ9NRL2 1556 aaPredicted RBP12.63□□□□□ -0.39
SYCP3-204ENST00000478139 BAZ1BQ9UIG0 1483 aaKnown RBP12.62□□□□□ -0.39
SYCP3-204ENST00000478139 SLC24A1O60721 1099 aa12.61□□□□□ -0.39
SYCP3-204ENST00000478139 BICRAQ9NZM4 1560 aa12.6□□□□□ -0.39
SYCP3-204ENST00000478139 EIF4G1Q04637 1599 aaKnown RBP12.57□□□□□ -0.4
SYCP3-204ENST00000478139 SMARCA2P51531 1590 aa12.53□□□□□ -0.4
SYCP3-204ENST00000478139 RSF1Q96T23 1441 aaPredicted RBP12.51□□□□□ -0.41
SYCP3-204ENST00000478139 ERCC6Q03468 1493 aa12.5□□□□□ -0.41
SYCP3-204ENST00000478139 UNC13AQ9UPW8 1703 aa12.5□□□□□ -0.41
SYCP3-204ENST00000478139 CC2D2AQ9P2K1 1620 aa12.47□□□□□ -0.41
SYCP3-204ENST00000478139 ATAD2BQ9ULI0 1458 aa12.47□□□□□ -0.41
SYCP3-204ENST00000478139 MROH2BQ7Z745 1585 aa12.47□□□□□ -0.41
SYCP3-204ENST00000478139 TRIM41Q8WV44 630 aa12.44□□□□□ -0.42
SYCP3-204ENST00000478139 SMARCA4P51532 1647 aa12.42□□□□□ -0.42
SYCP3-204ENST00000478139 NCAPD3P42695 1498 aa12.39□□□□□ -0.43
SYCP3-204ENST00000478139 FAM9AQ8IZU1 332 aaPredicted RBP12.37□□□□□ -0.43
SYCP3-204ENST00000478139 EHMT2Q96KQ7 1210 aa12.36□□□□□ -0.43
SYCP3-204ENST00000478139 CHIC1Q5VXU3 224 aa12.36□□□□□ -0.43
SYCP3-204ENST00000478139 PDS5BQ9NTI5 1447 aa12.34□□□□□ -0.43
SYCP3-204ENST00000478139 FBLN2P98095 1184 aa12.33□□□□□ -0.44
SYCP3-204ENST00000478139 HRCP23327 699 aa12.32□□□□□ -0.44
SYCP3-204ENST00000478139 CADPSQ9ULU8 1353 aa12.29□□□□□ -0.44
SYCP3-204ENST00000478139 WIZO95785 1651 aa12.27□□□□□ -0.44
SYCP3-204ENST00000478139 PCGF6Q9BYE7 350 aa12.26□□□□□ -0.45
SYCP3-204ENST00000478139 TOP2AP11388 1531 aaKnown RBP12.21□□□□□ -0.45
SYCP3-204ENST00000478139 HMGXB3Q12766 1538 aa12.21□□□□□ -0.46
SYCP3-204ENST00000478139 RANGAP1P46060 587 aaPredicted RBP12.2□□□□□ -0.46
SYCP3-204ENST00000478139 CCDC88BA6NC98 1476 aa12.19□□□□□ -0.46
SYCP3-204ENST00000478139 PPARGC1BQ86YN6 1023 aaKnown RBP12.16□□□□□ -0.46
SYCP3-204ENST00000478139 UBTFP17480 764 aaKnown RBP12.15□□□□□ -0.46
SYCP3-204ENST00000478139 CEP164Q9UPV0 1460 aa12.14□□□□□ -0.47
SYCP3-204ENST00000478139 TTBK1Q5TCY1 1321 aaPredicted RBP12.14□□□□□ -0.47
SYCP3-204ENST00000478139 NESP48681 1621 aa12.12□□□□□ -0.47
SYCP3-204ENST00000478139 FANCD2Q9BXW9 1451 aa12.11□□□□□ -0.47
SYCP3-204ENST00000478139 CHMP7Q8WUX9 453 aaPredicted RBP12.11□□□□□ -0.47
SYCP3-204ENST00000478139 LOC105371045A0A1W2PR82 267 aa12.09□□□□□ -0.47
SYCP3-204ENST00000478139 ATP1B4Q9UN42 357 aaPredicted RBP12.07□□□□□ -0.48
SYCP3-204ENST00000478139 WRNQ14191 1432 aaPredicted RBP eCLIP12.04□□□□□ -0.48
SYCP3-204ENST00000478139 PEG3Q9GZU2 1588 aa12.03□□□□□ -0.48
SYCP3-204ENST00000478139 APLP2Q06481 763 aa12.01□□□□□ -0.49
SYCP3-204ENST00000478139 CFTRP13569 1480 aa12□□□□□ -0.49
SYCP3-204ENST00000478139 LAMC3Q9Y6N6 1575 aa12□□□□□ -0.49
SYCP3-204ENST00000478139 ABCC8Q09428 1581 aa11.99□□□□□ -0.49
SYCP3-204ENST00000478139 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.98□□□□□ -0.49
SYCP3-204ENST00000478139 HNRNPUL2Q1KMD3 747 aaKnown RBP11.98□□□□□ -0.49
SYCP3-204ENST00000478139 SOGA1O94964 1423 aa11.98□□□□□ -0.49
SYCP3-204ENST00000478139 MRC2Q9UBG0 1479 aa11.97□□□□□ -0.49
SYCP3-204ENST00000478139 TDRD9Q8NDG6 1382 aaKnown RBP11.95□□□□□ -0.5
SYCP3-204ENST00000478139 CSRNP3Q8WYN3 585 aa11.92□□□□□ -0.5
SYCP3-204ENST00000478139 OSCARQ8IYS5 282 aa11.91□□□□□ -0.5
SYCP3-204ENST00000478139 NPM1P06748 294 aaKnown RBP eCLIP11.9□□□□□ -0.5
SYCP3-204ENST00000478139 KIF27Q86VH2 1401 aa11.89□□□□□ -0.51
SYCP3-204ENST00000478139 CUX2O14529 1486 aa11.89□□□□□ -0.51
SYCP3-204ENST00000478139 TRIM26Q12899 539 aaPredicted RBP11.88□□□□□ -0.51
SYCP3-204ENST00000478139 P3H3Q8IVL6 736 aa11.82□□□□□ -0.52
SYCP3-204ENST00000478139 FGD5Q6ZNL6 1462 aa11.81□□□□□ -0.52
SYCP3-204ENST00000478139 TOPBP1Q92547 1522 aa11.81□□□□□ -0.52
SYCP3-204ENST00000478139 IFT140Q96RY7 1462 aa11.8□□□□□ -0.52
SYCP3-204ENST00000478139 RAD54L2Q9Y4B4 1467 aa11.79□□□□□ -0.52
SYCP3-204ENST00000478139 AQRO60306 1485 aaKnown RBP eCLIP11.78□□□□□ -0.52
SYCP3-204ENST00000478139 CARMIL1Q5VZK9 1371 aa11.76□□□□□ -0.53
SYCP3-204ENST00000478139 MYT1LQ9UL68 1186 aa11.75□□□□□ -0.53
SYCP3-204ENST00000478139 GAPVD1Q14C86 1478 aa11.74□□□□□ -0.53
SYCP3-204ENST00000478139 ARID3CA6NKF2 412 aa11.74□□□□□ -0.53
SYCP3-204ENST00000478139 TRHP20396 242 aaPredicted RBP11.74□□□□□ -0.53
SYCP3-204ENST00000478139 DNMBPQ6XZF7 1577 aa11.74□□□□□ -0.53
SYCP3-204ENST00000478139 URB2Q14146 1524 aaKnown RBP11.73□□□□□ -0.53
SYCP3-204ENST00000478139 POLA1P09884 1462 aaPredicted RBP11.73□□□□□ -0.53
SYCP3-204ENST00000478139 CYB5RLQ6IPT4 315 aa11.72□□□□□ -0.53
SYCP3-204ENST00000478139 EEA1Q15075 1411 aa11.71□□□□□ -0.53
SYCP3-204ENST00000478139 GRIN2BQ13224 1484 aa11.7□□□□□ -0.54
SYCP3-204ENST00000478139 JPH4Q96JJ6 628 aa11.67□□□□□ -0.54
SYCP3-204ENST00000478139 KIF21AQ7Z4S6 1674 aa11.67□□□□□ -0.54
SYCP3-204ENST00000478139 CUX1P39880 1505 aa11.66□□□□□ -0.54
SYCP3-204ENST00000478139 CDK11AQ9UQ88 783 aaPredicted RBP11.65□□□□□ -0.54
SYCP3-204ENST00000478139 ZEB1P37275 1124 aaPredicted RBP11.65□□□□□ -0.54
SYCP3-204ENST00000478139 CARMIL2Q6F5E8 1435 aa11.63□□□□□ -0.55
SYCP3-204ENST00000478139 ZNF608Q9ULD9 1512 aaPredicted RBP11.62□□□□□ -0.55
SYCP3-204ENST00000478139 WDR62O43379 1518 aa11.61□□□□□ -0.55
SYCP3-204ENST00000478139 SNAPC4Q5SXM2 1469 aa11.61□□□□□ -0.55
SYCP3-204ENST00000478139 FHAD1B1AJZ9 1412 aa11.6□□□□□ -0.55
SYCP3-204ENST00000478139 IGF1RP08069 1367 aa11.58□□□□□ -0.56
SYCP3-204ENST00000478139 KCNH8Q96L42 1107 aa11.58□□□□□ -0.56
SYCP3-204ENST00000478139 SYNJ1O43426 1573 aa11.57□□□□□ -0.56
SYCP3-204ENST00000478139 TOP2BQ02880 1626 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms