RNA–Protein interactions for RNA: ENST00000477819.1

PTPRN-214, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 579 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-214ENST00000477819 AEBP2Q6ZN18 517 aaPredicted RBP24.24■■□□□ 1.47
PTPRN-214ENST00000477819 CHIC1Q5VXU3 224 aa23.1■■□□□ 1.29
PTPRN-214ENST00000477819 SENP3Q9H4L4 574 aaPredicted RBP20.6■□□□□ 0.89
PTPRN-214ENST00000477819 PHF23Q9BUL5 403 aaPredicted RBP20.38■□□□□ 0.85
PTPRN-214ENST00000477819 NISCHQ9Y2I1 1504 aa19.52■□□□□ 0.72
PTPRN-214ENST00000477819 FOXD1Q16676 465 aa19.22■□□□□ 0.67
PTPRN-214ENST00000477819 PLPPR3Q6T4P5 718 aa18.49■□□□□ 0.55
PTPRN-214ENST00000477819 ABCC9O60706 1549 aa18.38■□□□□ 0.53
PTPRN-214ENST00000477819 PPP6R1Q9UPN7 881 aa18.09■□□□□ 0.49
PTPRN-214ENST00000477819 ADRA2BP18089 450 aa18.05■□□□□ 0.48
PTPRN-214ENST00000477819 PIAS4Q8N2W9 510 aaPredicted RBP18.01■□□□□ 0.47
PTPRN-214ENST00000477819 MSH5O43196 834 aa17.89■□□□□ 0.45
PTPRN-214ENST00000477819 DNAJC5BQ9UF47 199 aa17.82■□□□□ 0.44
PTPRN-214ENST00000477819 CCDC180Q9P1Z9 1646 aa17.69■□□□□ 0.42
PTPRN-214ENST00000477819 POTEDQ86YR6 584 aa17.31■□□□□ 0.36
PTPRN-214ENST00000477819 RB1CC1Q8TDY2 1594 aa17.15■□□□□ 0.34
PTPRN-214ENST00000477819 PABPN1Q86U42 306 aaKnown RBP eCLIP17.07■□□□□ 0.32
PTPRN-214ENST00000477819 NACADO15069 1562 aa16.88■□□□□ 0.29
PTPRN-214ENST00000477819 DCAF8L2P0C7V8 631 aa16.85■□□□□ 0.29
PTPRN-214ENST00000477819 UNC13AQ9UPW8 1703 aa16.81■□□□□ 0.28
PTPRN-214ENST00000477819 BICRAQ9NZM4 1560 aa16.73■□□□□ 0.27
PTPRN-214ENST00000477819 DNAJC5Q9H3Z4 198 aa16.69■□□□□ 0.26
PTPRN-214ENST00000477819 CECR2Q9BXF3 1484 aa16.58■□□□□ 0.24
PTPRN-214ENST00000477819 MAPK8IP2Q13387 824 aaPredicted RBP16.55■□□□□ 0.24
PTPRN-214ENST00000477819 CC2D2AQ9P2K1 1620 aa16.53■□□□□ 0.24
PTPRN-214ENST00000477819 SCAF1Q9H7N4 1312 aaKnown RBP16.42■□□□□ 0.22
PTPRN-214ENST00000477819 MYO15BQ96JP2 1530 aa16.41■□□□□ 0.22
PTPRN-214ENST00000477819 DMRT2Q9Y5R5 561 aa16.36■□□□□ 0.21
PTPRN-214ENST00000477819 EIF4G1Q04637 1599 aaKnown RBP16.34■□□□□ 0.21
PTPRN-214ENST00000477819 SHROOM4Q9ULL8 1493 aa16.29■□□□□ 0.2
PTPRN-214ENST00000477819 PPP4R3CPQ6ZMV5 832 aa16.25■□□□□ 0.19
PTPRN-214ENST00000477819 SCRIBQ14160 1630 aa16.19■□□□□ 0.18
PTPRN-214ENST00000477819 ZCCHC6Q5VYS8 1495 aaKnown RBP16.03■□□□□ 0.16
PTPRN-214ENST00000477819 DCAF1Q9Y4B6 1507 aa16.02■□□□□ 0.15
PTPRN-214ENST00000477819 CUX2O14529 1486 aa15.97■□□□□ 0.15
PTPRN-214ENST00000477819 CNKSR2Q8WXI2 1034 aa15.89■□□□□ 0.13
PTPRN-214ENST00000477819 ERCC6Q03468 1493 aa15.86■□□□□ 0.13
PTPRN-214ENST00000477819 HOXD11P31277 338 aaPredicted RBP15.79■□□□□ 0.12
PTPRN-214ENST00000477819 TRIM41Q8WV44 630 aa15.79■□□□□ 0.12
PTPRN-214ENST00000477819 DCAF8L1A6NGE4 600 aa15.76■□□□□ 0.11
PTPRN-214ENST00000477819 RNF216Q9NWF9 866 aaPredicted RBP15.71■□□□□ 0.11
PTPRN-214ENST00000477819 NESP48681 1621 aa15.65■□□□□ 0.1
PTPRN-214ENST00000477819 NCBP3Q53F19 620 aaKnown RBP15.62■□□□□ 0.09
PTPRN-214ENST00000477819 NCAPD3P42695 1498 aa15.62■□□□□ 0.09
PTPRN-214ENST00000477819 THOC2Q8NI27 1593 aaKnown RBP15.52■□□□□ 0.07
PTPRN-214ENST00000477819 ATAD2BQ9ULI0 1458 aa15.52■□□□□ 0.07
PTPRN-214ENST00000477819 NPM3O75607 178 aaKnown RBP15.45■□□□□ 0.06
PTPRN-214ENST00000477819 SMARCA2P51531 1590 aa15.44■□□□□ 0.06
PTPRN-214ENST00000477819 HMGXB3Q12766 1538 aa15.42■□□□□ 0.06
PTPRN-214ENST00000477819 KIF21AQ7Z4S6 1674 aa15.38■□□□□ 0.05
PTPRN-214ENST00000477819 SMARCA4P51532 1647 aa15.35■□□□□ 0.05
PTPRN-214ENST00000477819 CACNB1Q02641 598 aaPredicted RBP15.33■□□□□ 0.04
PTPRN-214ENST00000477819 BAZ1BQ9UIG0 1483 aaKnown RBP15.33■□□□□ 0.04
PTPRN-214ENST00000477819 LAMC3Q9Y6N6 1575 aa15.32■□□□□ 0.04
PTPRN-214ENST00000477819 KCNA4P22459 653 aa15.3■□□□□ 0.04
PTPRN-214ENST00000477819 RNF39Q9H2S5 420 aa15.3■□□□□ 0.04
PTPRN-214ENST00000477819 PDS5BQ9NTI5 1447 aa15.28■□□□□ 0.04
PTPRN-214ENST00000477819 BAZ1AQ9NRL2 1556 aaPredicted RBP15.24■□□□□ 0.03
PTPRN-214ENST00000477819 OSCARQ8IYS5 282 aa15.21■□□□□ 0.03
PTPRN-214ENST00000477819 MRC2Q9UBG0 1479 aa15.2■□□□□ 0.02
PTPRN-214ENST00000477819 WDR62O43379 1518 aa15.17■□□□□ 0.02
PTPRN-214ENST00000477819 PEG3Q9GZU2 1588 aa15.15■□□□□ 0.02
PTPRN-214ENST00000477819 CADPSQ9ULU8 1353 aa15.14■□□□□ 0.01
PTPRN-214ENST00000477819 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.09■□□□□ 0.01
PTPRN-214ENST00000477819 MROH2BQ7Z745 1585 aa15.08■□□□□ 0
PTPRN-214ENST00000477819 RIMBP3CA6NJZ7 1639 aa15.07■□□□□ 0
PTPRN-214ENST00000477819 RIMBP3BA6NNM3 1639 aa15.07■□□□□ 0
PTPRN-214ENST00000477819 RIMBP3Q9UFD9 1639 aa15.07■□□□□ 0
PTPRN-214ENST00000477819 C1QBPQ07021 282 aaKnown RBP15.05■□□□□ -0
PTPRN-214ENST00000477819 CEP164Q9UPV0 1460 aa15.01□□□□□ -0.01
PTPRN-214ENST00000477819 FANCD2Q9BXW9 1451 aa14.97□□□□□ -0.01
PTPRN-214ENST00000477819 TRHP20396 242 aaPredicted RBP14.96□□□□□ -0.01
PTPRN-214ENST00000477819 ARHGEF11O15085 1522 aa14.96□□□□□ -0.02
PTPRN-214ENST00000477819 CYB5RLQ6IPT4 315 aa14.95□□□□□ -0.02
PTPRN-214ENST00000477819 URB2Q14146 1524 aaKnown RBP14.91□□□□□ -0.02
PTPRN-214ENST00000477819 WIZO95785 1651 aa14.87□□□□□ -0.03
PTPRN-214ENST00000477819 ZNF608Q9ULD9 1512 aaPredicted RBP14.85□□□□□ -0.03
PTPRN-214ENST00000477819 CFTRP13569 1480 aa14.83□□□□□ -0.03
PTPRN-214ENST00000477819 U3KPZ7 1027 aaPredicted RBP14.8□□□□□ -0.04
PTPRN-214ENST00000477819 ARAP1Q96P48 1450 aa14.79□□□□□ -0.04
PTPRN-214ENST00000477819 SLC4A2P04920 1241 aa14.73□□□□□ -0.05
PTPRN-214ENST00000477819 IFT140Q96RY7 1462 aa14.73□□□□□ -0.05
PTPRN-214ENST00000477819 CHD1O14646 1710 aa14.69□□□□□ -0.06
PTPRN-214ENST00000477819 FBLN2P98095 1184 aa14.69□□□□□ -0.06
PTPRN-214ENST00000477819 EIF4G3O43432 1585 aaKnown RBP14.68□□□□□ -0.06
PTPRN-214ENST00000477819 AQRO60306 1485 aaKnown RBP eCLIP14.64□□□□□ -0.07
PTPRN-214ENST00000477819 TOPBP1Q92547 1522 aa14.63□□□□□ -0.07
PTPRN-214ENST00000477819 RSF1Q96T23 1441 aaPredicted RBP14.63□□□□□ -0.07
PTPRN-214ENST00000477819 PRDM2Q13029 1718 aa14.6□□□□□ -0.07
PTPRN-214ENST00000477819 TOP2AP11388 1531 aaKnown RBP14.59□□□□□ -0.07
PTPRN-214ENST00000477819 SPINK5Q9NQ38 1064 aaPredicted RBP14.57□□□□□ -0.08
PTPRN-214ENST00000477819 TARBP1Q13395 1621 aaKnown RBP14.54□□□□□ -0.08
PTPRN-214ENST00000477819 CAPN15O75808 1086 aa14.53□□□□□ -0.08
PTPRN-214ENST00000477819 DNMBPQ6XZF7 1577 aa14.5□□□□□ -0.09
PTPRN-214ENST00000477819 ABCC8Q09428 1581 aa14.48□□□□□ -0.09
PTPRN-214ENST00000477819 CLASP1Q7Z460 1538 aa14.48□□□□□ -0.09
PTPRN-214ENST00000477819 CCDC88BA6NC98 1476 aa14.48□□□□□ -0.09
PTPRN-214ENST00000477819 TDRD9Q8NDG6 1382 aaKnown RBP14.47□□□□□ -0.09
PTPRN-214ENST00000477819 RAD54L2Q9Y4B4 1467 aa14.45□□□□□ -0.1
PTPRN-214ENST00000477819 POLA1P09884 1462 aaPredicted RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms