RNA–Protein interactions for RNA: ENST00000473371.1

NHLRC3-204, Transcript of NHL repeat containing 3, humanhuman

TSL 2

Gene NHLRC3, Length 3,237 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC3-204ENST00000473371 NISCHQ9Y2I1 1504 aa28.38■■■□□ 2.13
NHLRC3-204ENST00000473371 CCDC180Q9P1Z9 1646 aa24.81■■□□□ 1.56
NHLRC3-204ENST00000473371 SHROOM4Q9ULL8 1493 aa24.6■■□□□ 1.53
NHLRC3-204ENST00000473371 SUPT5HO00267 1087 aaKnown RBP24.33■■□□□ 1.48
NHLRC3-204ENST00000473371 ZCCHC6Q5VYS8 1495 aaKnown RBP24.07■■□□□ 1.44
NHLRC3-204ENST00000473371 CHIC1Q5VXU3 224 aa23.77■■□□□ 1.4
NHLRC3-204ENST00000473371 MYO15BQ96JP2 1530 aa23.75■■□□□ 1.39
NHLRC3-204ENST00000473371 HRCP23327 699 aa23.7■■□□□ 1.38
NHLRC3-204ENST00000473371 DCAF8L2P0C7V8 631 aa23.61■■□□□ 1.37
NHLRC3-204ENST00000473371 PCGF6Q9BYE7 350 aa23.47■■□□□ 1.35
NHLRC3-204ENST00000473371 DCAF1Q9Y4B6 1507 aa23.44■■□□□ 1.34
NHLRC3-204ENST00000473371 PPARGC1BQ86YN6 1023 aaKnown RBP23.18■■□□□ 1.3
NHLRC3-204ENST00000473371 LOC105371045A0A1W2PR82 267 aa23.12■■□□□ 1.29
NHLRC3-204ENST00000473371 TRIM26Q12899 539 aaPredicted RBP22.91■■□□□ 1.26
NHLRC3-204ENST00000473371 NACADO15069 1562 aa22.84■■□□□ 1.25
NHLRC3-204ENST00000473371 ABCC9O60706 1549 aa22.79■■□□□ 1.24
NHLRC3-204ENST00000473371 RSF1Q96T23 1441 aaPredicted RBP22.62■■□□□ 1.21
NHLRC3-204ENST00000473371 TRIM41Q8WV44 630 aa22.6■■□□□ 1.21
NHLRC3-204ENST00000473371 ZEB1P37275 1124 aaPredicted RBP22.59■■□□□ 1.21
NHLRC3-204ENST00000473371 SCRIBQ14160 1630 aa22.57■■□□□ 1.2
NHLRC3-204ENST00000473371 RB1CC1Q8TDY2 1594 aa22.53■■□□□ 1.2
NHLRC3-204ENST00000473371 FAM9AQ8IZU1 332 aaPredicted RBP22.48■■□□□ 1.19
NHLRC3-204ENST00000473371 UNC13AQ9UPW8 1703 aa22.48■■□□□ 1.19
NHLRC3-204ENST00000473371 EHMT2Q96KQ7 1210 aa22.32■■□□□ 1.16
NHLRC3-204ENST00000473371 CECR2Q9BXF3 1484 aa22.15■■□□□ 1.14
NHLRC3-204ENST00000473371 PELP1Q8IZL8 1130 aaKnown RBP22.1■■□□□ 1.13
NHLRC3-204ENST00000473371 MROH2BQ7Z745 1585 aa22.1■■□□□ 1.13
NHLRC3-204ENST00000473371 SCAF1Q9H7N4 1312 aaKnown RBP22.08■■□□□ 1.13
NHLRC3-204ENST00000473371 BICRAQ9NZM4 1560 aa22.05■■□□□ 1.12
NHLRC3-204ENST00000473371 WIZO95785 1651 aa22.01■■□□□ 1.11
NHLRC3-204ENST00000473371 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.95■■□□□ 1.1
NHLRC3-204ENST00000473371 CCER1Q8TC90 406 aaPredicted RBP21.93■■□□□ 1.1
NHLRC3-204ENST00000473371 BAZ1AQ9NRL2 1556 aaPredicted RBP21.88■■□□□ 1.09
NHLRC3-204ENST00000473371 EIF4G1Q04637 1599 aaKnown RBP21.82■■□□□ 1.08
NHLRC3-204ENST00000473371 ACIN1Q9UKV3 1341 aaKnown RBP21.76■■□□□ 1.07
NHLRC3-204ENST00000473371 TTBK1Q5TCY1 1321 aaPredicted RBP21.7■■□□□ 1.06
NHLRC3-204ENST00000473371 DIEXFQ68CQ4 756 aaKnown RBP21.69■■□□□ 1.06
NHLRC3-204ENST00000473371 NEUROD1Q13562 356 aa21.69■■□□□ 1.06
NHLRC3-204ENST00000473371 ABCC8Q09428 1581 aa21.68■■□□□ 1.06
NHLRC3-204ENST00000473371 WRNQ14191 1432 aaPredicted RBP eCLIP21.68■■□□□ 1.06
NHLRC3-204ENST00000473371 CCDC88BA6NC98 1476 aa21.66■■□□□ 1.06
NHLRC3-204ENST00000473371 TOP2AP11388 1531 aaKnown RBP21.65■■□□□ 1.06
NHLRC3-204ENST00000473371 CEP162Q5TB80 1403 aa21.64■■□□□ 1.05
NHLRC3-204ENST00000473371 CENPBP07199 599 aaPredicted RBP21.61■■□□□ 1.05
NHLRC3-204ENST00000473371 PEG3Q9GZU2 1588 aa21.58■■□□□ 1.05
NHLRC3-204ENST00000473371 TNIKQ9UKE5 1360 aa21.57■■□□□ 1.04
NHLRC3-204ENST00000473371 SOGA1O94964 1423 aa21.56■■□□□ 1.04
NHLRC3-204ENST00000473371 SMARCA2P51531 1590 aa21.55■■□□□ 1.04
NHLRC3-204ENST00000473371 SMARCA4P51532 1647 aa21.54■■□□□ 1.04
NHLRC3-204ENST00000473371 GTF3C3Q9Y5Q9 886 aa21.53■■□□□ 1.04
NHLRC3-204ENST00000473371 UBTFP17480 764 aaKnown RBP21.5■■□□□ 1.03
NHLRC3-204ENST00000473371 CSRNP3Q8WYN3 585 aa21.5■■□□□ 1.03
NHLRC3-204ENST00000473371 EEA1Q15075 1411 aa21.49■■□□□ 1.03
NHLRC3-204ENST00000473371 RUSC2Q8N2Y8 1516 aa21.43■■□□□ 1.02
NHLRC3-204ENST00000473371 ZNF316A6NFI3 1004 aaPredicted RBP21.42■■□□□ 1.02
NHLRC3-204ENST00000473371 GOLGA3Q08378 1498 aa21.38■■□□□ 1.01
NHLRC3-204ENST00000473371 HNRNPUL2Q1KMD3 747 aaKnown RBP21.26■□□□□ 0.99
NHLRC3-204ENST00000473371 YTHDC1Q96MU7 727 aaKnown RBP21.25■□□□□ 0.99
NHLRC3-204ENST00000473371 CEP164Q9UPV0 1460 aa21.22■□□□□ 0.99
NHLRC3-204ENST00000473371 CLIP1P30622 1438 aa21.17■□□□□ 0.98
NHLRC3-204ENST00000473371 MIER1Q8N108 512 aa21.16■□□□□ 0.98
NHLRC3-204ENST00000473371 KIF21BO75037 1637 aa21.16■□□□□ 0.98
NHLRC3-204ENST00000473371 APLP2Q06481 763 aa21.13■□□□□ 0.97
NHLRC3-204ENST00000473371 SYNJ1O43426 1573 aa21.12■□□□□ 0.97
NHLRC3-204ENST00000473371 HMGXB3Q12766 1538 aa21.11■□□□□ 0.97
NHLRC3-204ENST00000473371 PABPN1Q86U42 306 aaKnown RBP eCLIP21.11■□□□□ 0.97
NHLRC3-204ENST00000473371 VPS8Q8N3P4 1428 aa21.11■□□□□ 0.97
NHLRC3-204ENST00000473371 MYT1Q01538 1121 aa21.09■□□□□ 0.97
NHLRC3-204ENST00000473371 BAZ1BQ9UIG0 1483 aaKnown RBP21.04■□□□□ 0.96
NHLRC3-204ENST00000473371 RANGAP1P46060 587 aaPredicted RBP21.02■□□□□ 0.96
NHLRC3-204ENST00000473371 RAPGEF2Q9Y4G8 1499 aa21.01■□□□□ 0.95
NHLRC3-204ENST00000473371 ATAD2BQ9ULI0 1458 aa20.98■□□□□ 0.95
NHLRC3-204ENST00000473371 NCAPD3P42695 1498 aa20.96■□□□□ 0.95
NHLRC3-204ENST00000473371 PRDM2Q13029 1718 aa20.89■□□□□ 0.93
NHLRC3-204ENST00000473371 CLSPNQ9HAW4 1339 aa20.86■□□□□ 0.93
NHLRC3-204ENST00000473371 CC2D2AQ9P2K1 1620 aa20.86■□□□□ 0.93
NHLRC3-204ENST00000473371 DHX57Q6P158 1386 aaKnown RBP20.83■□□□□ 0.92
NHLRC3-204ENST00000473371 TOP2BQ02880 1626 aa20.81■□□□□ 0.92
NHLRC3-204ENST00000473371 ERICH3Q5RHP9 1530 aa20.75■□□□□ 0.91
NHLRC3-204ENST00000473371 ARAP1Q96P48 1450 aa20.75■□□□□ 0.91
NHLRC3-204ENST00000473371 KANK4Q5T7N3 995 aaPredicted RBP20.74■□□□□ 0.91
NHLRC3-204ENST00000473371 PRXQ9BXM0 1461 aa20.72■□□□□ 0.91
NHLRC3-204ENST00000473371 BIVM-ERCC5R4GMW8 1640 aa20.72■□□□□ 0.91
NHLRC3-204ENST00000473371 RRBP1Q9P2E9 1410 aaKnown RBP20.65■□□□□ 0.9
NHLRC3-204ENST00000473371 SUPT16HQ9Y5B9 1047 aaKnown RBP20.63■□□□□ 0.89
NHLRC3-204ENST00000473371 CCNB3Q8WWL7 1395 aa20.58■□□□□ 0.89
NHLRC3-204ENST00000473371 KIF27Q86VH2 1401 aa20.58■□□□□ 0.89
NHLRC3-204ENST00000473371 ITGAEP38570 1179 aa20.57■□□□□ 0.88
NHLRC3-204ENST00000473371 CUX2O14529 1486 aa20.57■□□□□ 0.88
NHLRC3-204ENST00000473371 CUX1P39880 1505 aa20.55■□□□□ 0.88
NHLRC3-204ENST00000473371 ARHGAP35Q9NRY4 1499 aa20.51■□□□□ 0.87
NHLRC3-204ENST00000473371 RAB3GAP2Q9H2M9 1393 aa20.46■□□□□ 0.87
NHLRC3-204ENST00000473371 CFTRP13569 1480 aa20.41■□□□□ 0.86
NHLRC3-204ENST00000473371 KCNH8Q96L42 1107 aa20.4■□□□□ 0.86
NHLRC3-204ENST00000473371 TSHZ2Q9NRE2 1034 aa20.39■□□□□ 0.85
NHLRC3-204ENST00000473371 MAPKBP1O60336 1514 aa20.39■□□□□ 0.85
NHLRC3-204ENST00000473371 SETD5Q9C0A6 1442 aa20.36■□□□□ 0.85
NHLRC3-204ENST00000473371 TIAM1Q13009 1591 aa20.35■□□□□ 0.85
NHLRC3-204ENST00000473371 LAMC3Q9Y6N6 1575 aa20.35■□□□□ 0.85
NHLRC3-204ENST00000473371 MAP3K1Q13233 1512 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms