RNA–Protein interactions for RNA: ENST00000470537.1

XRN1-208, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-208ENST00000470537 AEBP2Q6ZN18 517 aaPredicted RBP28.64■■■□□ 2.18
XRN1-208ENST00000470537 CHIC1Q5VXU3 224 aa27.08■■□□□ 1.93
XRN1-208ENST00000470537 SENP3Q9H4L4 574 aaPredicted RBP24.51■■□□□ 1.51
XRN1-208ENST00000470537 PHF23Q9BUL5 403 aaPredicted RBP24.14■■□□□ 1.45
XRN1-208ENST00000470537 FOXD1Q16676 465 aa22.82■■□□□ 1.24
XRN1-208ENST00000470537 NISCHQ9Y2I1 1504 aa22.19■■□□□ 1.14
XRN1-208ENST00000470537 PLPPR3Q6T4P5 718 aa21.6■■□□□ 1.05
XRN1-208ENST00000470537 MSH5O43196 834 aa21.45■■□□□ 1.02
XRN1-208ENST00000470537 PIAS4Q8N2W9 510 aaPredicted RBP21.34■■□□□ 1.01
XRN1-208ENST00000470537 PPP6R1Q9UPN7 881 aa21.22■□□□□ 0.99
XRN1-208ENST00000470537 ADRA2BP18089 450 aa21.17■□□□□ 0.98
XRN1-208ENST00000470537 POTEDQ86YR6 584 aa21.14■□□□□ 0.97
XRN1-208ENST00000470537 ABCC9O60706 1549 aa20.26■□□□□ 0.83
XRN1-208ENST00000470537 CCDC180Q9P1Z9 1646 aa20.02■□□□□ 0.8
XRN1-208ENST00000470537 MAPK8IP2Q13387 824 aaPredicted RBP19.47■□□□□ 0.71
XRN1-208ENST00000470537 SCAF1Q9H7N4 1312 aaKnown RBP19.4■□□□□ 0.7
XRN1-208ENST00000470537 DMRT2Q9Y5R5 561 aa19.39■□□□□ 0.69
XRN1-208ENST00000470537 RB1CC1Q8TDY2 1594 aa19.24■□□□□ 0.67
XRN1-208ENST00000470537 DNAJC5BQ9UF47 199 aa19.21■□□□□ 0.67
XRN1-208ENST00000470537 NACADO15069 1562 aa19.06■□□□□ 0.64
XRN1-208ENST00000470537 DCAF8L2P0C7V8 631 aa18.98■□□□□ 0.63
XRN1-208ENST00000470537 PPP4R3CPQ6ZMV5 832 aa18.91■□□□□ 0.62
XRN1-208ENST00000470537 PABPN1Q86U42 306 aaKnown RBP eCLIP18.86■□□□□ 0.61
XRN1-208ENST00000470537 MYO15BQ96JP2 1530 aa18.72■□□□□ 0.59
XRN1-208ENST00000470537 DCAF8L1A6NGE4 600 aa18.68■□□□□ 0.58
XRN1-208ENST00000470537 UNC13AQ9UPW8 1703 aa18.64■□□□□ 0.57
XRN1-208ENST00000470537 HOXD11P31277 338 aaPredicted RBP18.6■□□□□ 0.57
XRN1-208ENST00000470537 CNKSR2Q8WXI2 1034 aa18.58■□□□□ 0.56
XRN1-208ENST00000470537 BICRAQ9NZM4 1560 aa18.55■□□□□ 0.56
XRN1-208ENST00000470537 CACNB1Q02641 598 aaPredicted RBP18.5■□□□□ 0.55
XRN1-208ENST00000470537 SHROOM4Q9ULL8 1493 aa18.46■□□□□ 0.54
XRN1-208ENST00000470537 RNF216Q9NWF9 866 aaPredicted RBP18.44■□□□□ 0.54
XRN1-208ENST00000470537 DCAF1Q9Y4B6 1507 aa18.36■□□□□ 0.53
XRN1-208ENST00000470537 CECR2Q9BXF3 1484 aa18.32■□□□□ 0.52
XRN1-208ENST00000470537 ZCCHC6Q5VYS8 1495 aaKnown RBP18.3■□□□□ 0.52
XRN1-208ENST00000470537 CC2D2AQ9P2K1 1620 aa18.28■□□□□ 0.52
XRN1-208ENST00000470537 RNF39Q9H2S5 420 aa18.26■□□□□ 0.51
XRN1-208ENST00000470537 EIF4G1Q04637 1599 aaKnown RBP18.19■□□□□ 0.5
XRN1-208ENST00000470537 NCBP3Q53F19 620 aaKnown RBP18.17■□□□□ 0.5
XRN1-208ENST00000470537 SCRIBQ14160 1630 aa18.16■□□□□ 0.5
XRN1-208ENST00000470537 C1QBPQ07021 282 aaKnown RBP18.01■□□□□ 0.47
XRN1-208ENST00000470537 DNAJC5Q9H3Z4 198 aa17.98■□□□□ 0.47
XRN1-208ENST00000470537 NPM3O75607 178 aaKnown RBP17.87■□□□□ 0.45
XRN1-208ENST00000470537 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.8■□□□□ 0.44
XRN1-208ENST00000470537 CUX2O14529 1486 aa17.65■□□□□ 0.42
XRN1-208ENST00000470537 ERCC6Q03468 1493 aa17.6■□□□□ 0.41
XRN1-208ENST00000470537 NCAPD3P42695 1498 aa17.59■□□□□ 0.41
XRN1-208ENST00000470537 ATAD2BQ9ULI0 1458 aa17.45■□□□□ 0.38
XRN1-208ENST00000470537 SMARCA2P51531 1590 aa17.45■□□□□ 0.38
XRN1-208ENST00000470537 KCNA4P22459 653 aa17.42■□□□□ 0.38
XRN1-208ENST00000470537 HMGXB3Q12766 1538 aa17.4■□□□□ 0.38
XRN1-208ENST00000470537 U3KPZ7 1027 aaPredicted RBP17.36■□□□□ 0.37
XRN1-208ENST00000470537 SMARCA4P51532 1647 aa17.33■□□□□ 0.37
XRN1-208ENST00000470537 BAZ1BQ9UIG0 1483 aaKnown RBP17.31■□□□□ 0.36
XRN1-208ENST00000470537 NESP48681 1621 aa17.29■□□□□ 0.36
XRN1-208ENST00000470537 BAZ1AQ9NRL2 1556 aaPredicted RBP17.28■□□□□ 0.36
XRN1-208ENST00000470537 LAMC3Q9Y6N6 1575 aa17.23■□□□□ 0.35
XRN1-208ENST00000470537 PDS5BQ9NTI5 1447 aa17.21■□□□□ 0.35
XRN1-208ENST00000470537 PEG3Q9GZU2 1588 aa17.19■□□□□ 0.34
XRN1-208ENST00000470537 CAPN15O75808 1086 aa17.17■□□□□ 0.34
XRN1-208ENST00000470537 SPINK5Q9NQ38 1064 aaPredicted RBP17.16■□□□□ 0.34
XRN1-208ENST00000470537 THOC2Q8NI27 1593 aaKnown RBP17.15■□□□□ 0.34
XRN1-208ENST00000470537 SLC4A2P04920 1241 aa17.09■□□□□ 0.33
XRN1-208ENST00000470537 CADPSQ9ULU8 1353 aa17.06■□□□□ 0.32
XRN1-208ENST00000470537 DSG3P32926 999 aa17.05■□□□□ 0.32
XRN1-208ENST00000470537 TRIM41Q8WV44 630 aa17.05■□□□□ 0.32
XRN1-208ENST00000470537 MROH2BQ7Z745 1585 aa17.04■□□□□ 0.32
XRN1-208ENST00000470537 KIF21AQ7Z4S6 1674 aa17.04■□□□□ 0.32
XRN1-208ENST00000470537 MRC2Q9UBG0 1479 aa16.99■□□□□ 0.31
XRN1-208ENST00000470537 WDR62O43379 1518 aa16.92■□□□□ 0.3
XRN1-208ENST00000470537 APLP2Q06481 763 aa16.91■□□□□ 0.3
XRN1-208ENST00000470537 OSCARQ8IYS5 282 aa16.9■□□□□ 0.3
XRN1-208ENST00000470537 CEP164Q9UPV0 1460 aa16.88■□□□□ 0.29
XRN1-208ENST00000470537 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.86■□□□□ 0.29
XRN1-208ENST00000470537 TRHP20396 242 aaPredicted RBP16.86■□□□□ 0.29
XRN1-208ENST00000470537 HNRNPUL2Q1KMD3 747 aaKnown RBP16.86■□□□□ 0.29
XRN1-208ENST00000470537 FANCD2Q9BXW9 1451 aa16.83■□□□□ 0.28
XRN1-208ENST00000470537 ZNF219Q9P2Y4 722 aaPredicted RBP16.82■□□□□ 0.28
XRN1-208ENST00000470537 WIZO95785 1651 aa16.81■□□□□ 0.28
XRN1-208ENST00000470537 CFTRP13569 1480 aa16.78■□□□□ 0.28
XRN1-208ENST00000470537 ABCB7O75027 752 aa16.76■□□□□ 0.27
XRN1-208ENST00000470537 SAMD1Q6SPF0 538 aaPredicted RBP16.75■□□□□ 0.27
XRN1-208ENST00000470537 RSF1Q96T23 1441 aaPredicted RBP16.64■□□□□ 0.25
XRN1-208ENST00000470537 URB2Q14146 1524 aaKnown RBP16.64■□□□□ 0.25
XRN1-208ENST00000470537 TOP2AP11388 1531 aaKnown RBP16.62■□□□□ 0.25
XRN1-208ENST00000470537 IFT140Q96RY7 1462 aa16.57■□□□□ 0.24
XRN1-208ENST00000470537 MYCNP04198 464 aaPredicted RBP16.56■□□□□ 0.24
XRN1-208ENST00000470537 POTEHQ6S545 545 aa16.56■□□□□ 0.24
XRN1-208ENST00000470537 ABCC8Q09428 1581 aa16.54■□□□□ 0.24
XRN1-208ENST00000470537 RIMBP3CA6NJZ7 1639 aa16.52■□□□□ 0.23
XRN1-208ENST00000470537 RIMBP3BA6NNM3 1639 aa16.52■□□□□ 0.23
XRN1-208ENST00000470537 RIMBP3Q9UFD9 1639 aa16.52■□□□□ 0.23
XRN1-208ENST00000470537 PRDM2Q13029 1718 aa16.51■□□□□ 0.23
XRN1-208ENST00000470537 ARHGEF11O15085 1522 aa16.47■□□□□ 0.23
XRN1-208ENST00000470537 ZNF608Q9ULD9 1512 aaPredicted RBP16.47■□□□□ 0.23
XRN1-208ENST00000470537 CYB5RLQ6IPT4 315 aa16.47■□□□□ 0.23
XRN1-208ENST00000470537 CCDC88BA6NC98 1476 aa16.45■□□□□ 0.22
XRN1-208ENST00000470537 TOPBP1Q92547 1522 aa16.45■□□□□ 0.22
XRN1-208ENST00000470537 SLC4A1APQ9BWU0 796 aaKnown RBP16.44■□□□□ 0.22
XRN1-208ENST00000470537 FBLN2P98095 1184 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms