RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 AEBP2Q6ZN18 517 aaPredicted RBP15.47■□□□□ 0.07
PTPN4-209ENST00000469511 CHIC1Q5VXU3 224 aa15.38■□□□□ 0.05
PTPN4-209ENST00000469511 NISCHQ9Y2I1 1504 aa13.76□□□□□ -0.21
PTPN4-209ENST00000469511 PHF23Q9BUL5 403 aaPredicted RBP13.54□□□□□ -0.24
PTPN4-209ENST00000469511 SENP3Q9H4L4 574 aaPredicted RBP13.1□□□□□ -0.31
PTPN4-209ENST00000469511 ABCC9O60706 1549 aa12.87□□□□□ -0.35
PTPN4-209ENST00000469511 PLPPR3Q6T4P5 718 aa12.61□□□□□ -0.39
PTPN4-209ENST00000469511 DNAJC5BQ9UF47 199 aa12.46□□□□□ -0.41
PTPN4-209ENST00000469511 CCDC180Q9P1Z9 1646 aa12.45□□□□□ -0.42
PTPN4-209ENST00000469511 FOXD1Q16676 465 aa12.11□□□□□ -0.47
PTPN4-209ENST00000469511 RB1CC1Q8TDY2 1594 aa12□□□□□ -0.49
PTPN4-209ENST00000469511 PABPN1Q86U42 306 aaKnown RBP eCLIP11.96□□□□□ -0.49
PTPN4-209ENST00000469511 UNC13AQ9UPW8 1703 aa11.9□□□□□ -0.5
PTPN4-209ENST00000469511 PPP6R1Q9UPN7 881 aa11.85□□□□□ -0.51
PTPN4-209ENST00000469511 ADRA2BP18089 450 aa11.84□□□□□ -0.51
PTPN4-209ENST00000469511 NACADO15069 1562 aa11.83□□□□□ -0.52
PTPN4-209ENST00000469511 DCAF8L2P0C7V8 631 aa11.82□□□□□ -0.52
PTPN4-209ENST00000469511 BICRAQ9NZM4 1560 aa11.78□□□□□ -0.52
PTPN4-209ENST00000469511 CC2D2AQ9P2K1 1620 aa11.59□□□□□ -0.55
PTPN4-209ENST00000469511 CECR2Q9BXF3 1484 aa11.57□□□□□ -0.56
PTPN4-209ENST00000469511 DNAJC5Q9H3Z4 198 aa11.55□□□□□ -0.56
PTPN4-209ENST00000469511 MYO15BQ96JP2 1530 aa11.51□□□□□ -0.57
PTPN4-209ENST00000469511 PIAS4Q8N2W9 510 aaPredicted RBP11.47□□□□□ -0.57
PTPN4-209ENST00000469511 EIF4G1Q04637 1599 aaKnown RBP11.45□□□□□ -0.58
PTPN4-209ENST00000469511 SCRIBQ14160 1630 aa11.41□□□□□ -0.58
PTPN4-209ENST00000469511 SHROOM4Q9ULL8 1493 aa11.36□□□□□ -0.59
PTPN4-209ENST00000469511 ZCCHC6Q5VYS8 1495 aaKnown RBP11.32□□□□□ -0.6
PTPN4-209ENST00000469511 DCAF1Q9Y4B6 1507 aa11.26□□□□□ -0.61
PTPN4-209ENST00000469511 KCNA4P22459 653 aa11.14□□□□□ -0.63
PTPN4-209ENST00000469511 PPP4R3CPQ6ZMV5 832 aa11.12□□□□□ -0.63
PTPN4-209ENST00000469511 CUX2O14529 1486 aa11.11□□□□□ -0.63
PTPN4-209ENST00000469511 MSH5O43196 834 aa11.09□□□□□ -0.63
PTPN4-209ENST00000469511 ERCC6Q03468 1493 aa11.04□□□□□ -0.64
PTPN4-209ENST00000469511 NESP48681 1621 aa11□□□□□ -0.65
PTPN4-209ENST00000469511 TRIM41Q8WV44 630 aa10.95□□□□□ -0.66
PTPN4-209ENST00000469511 NCAPD3P42695 1498 aa10.94□□□□□ -0.66
PTPN4-209ENST00000469511 NCBP3Q53F19 620 aaKnown RBP10.92□□□□□ -0.66
PTPN4-209ENST00000469511 ATAD2BQ9ULI0 1458 aa10.9□□□□□ -0.66
PTPN4-209ENST00000469511 THOC2Q8NI27 1593 aaKnown RBP10.9□□□□□ -0.67
PTPN4-209ENST00000469511 SCAF1Q9H7N4 1312 aaKnown RBP10.87□□□□□ -0.67
PTPN4-209ENST00000469511 KIF21AQ7Z4S6 1674 aa10.84□□□□□ -0.67
PTPN4-209ENST00000469511 SMARCA2P51531 1590 aa10.82□□□□□ -0.68
PTPN4-209ENST00000469511 SMARCA4P51532 1647 aa10.82□□□□□ -0.68
PTPN4-209ENST00000469511 HMGXB3Q12766 1538 aa10.81□□□□□ -0.68
PTPN4-209ENST00000469511 CNKSR2Q8WXI2 1034 aa10.78□□□□□ -0.68
PTPN4-209ENST00000469511 NPM3O75607 178 aaKnown RBP10.75□□□□□ -0.69
PTPN4-209ENST00000469511 BAZ1BQ9UIG0 1483 aaKnown RBP10.74□□□□□ -0.69
PTPN4-209ENST00000469511 LAMC3Q9Y6N6 1575 aa10.73□□□□□ -0.69
PTPN4-209ENST00000469511 MROH2BQ7Z745 1585 aa10.66□□□□□ -0.7
PTPN4-209ENST00000469511 PEG3Q9GZU2 1588 aa10.66□□□□□ -0.7
PTPN4-209ENST00000469511 MAPK8IP2Q13387 824 aaPredicted RBP10.66□□□□□ -0.7
PTPN4-209ENST00000469511 SLC4A1APQ9BWU0 796 aaKnown RBP10.66□□□□□ -0.7
PTPN4-209ENST00000469511 PDS5BQ9NTI5 1447 aa10.66□□□□□ -0.7
PTPN4-209ENST00000469511 BAZ1AQ9NRL2 1556 aaPredicted RBP10.65□□□□□ -0.7
PTPN4-209ENST00000469511 WDR62O43379 1518 aa10.63□□□□□ -0.71
PTPN4-209ENST00000469511 MRC2Q9UBG0 1479 aa10.62□□□□□ -0.71
PTPN4-209ENST00000469511 EHMT2Q96KQ7 1210 aa10.61□□□□□ -0.71
PTPN4-209ENST00000469511 CADPSQ9ULU8 1353 aa10.6□□□□□ -0.71
PTPN4-209ENST00000469511 OSCARQ8IYS5 282 aa10.58□□□□□ -0.72
PTPN4-209ENST00000469511 RIMBP3CA6NJZ7 1639 aa10.55□□□□□ -0.72
PTPN4-209ENST00000469511 RIMBP3BA6NNM3 1639 aa10.55□□□□□ -0.72
PTPN4-209ENST00000469511 RIMBP3Q9UFD9 1639 aa10.55□□□□□ -0.72
PTPN4-209ENST00000469511 WIZO95785 1651 aa10.54□□□□□ -0.72
PTPN4-209ENST00000469511 CEP164Q9UPV0 1460 aa10.51□□□□□ -0.73
PTPN4-209ENST00000469511 RNF216Q9NWF9 866 aaPredicted RBP10.51□□□□□ -0.73
PTPN4-209ENST00000469511 DMRT2Q9Y5R5 561 aa10.51□□□□□ -0.73
PTPN4-209ENST00000469511 FANCD2Q9BXW9 1451 aa10.49□□□□□ -0.73
PTPN4-209ENST00000469511 URB2Q14146 1524 aaKnown RBP10.48□□□□□ -0.73
PTPN4-209ENST00000469511 ARHGEF11O15085 1522 aa10.44□□□□□ -0.74
PTPN4-209ENST00000469511 ZNF608Q9ULD9 1512 aaPredicted RBP10.43□□□□□ -0.74
PTPN4-209ENST00000469511 CYB5RLQ6IPT4 315 aa10.42□□□□□ -0.74
PTPN4-209ENST00000469511 CSRNP3Q8WYN3 585 aa10.42□□□□□ -0.74
PTPN4-209ENST00000469511 CFTRP13569 1480 aa10.42□□□□□ -0.74
PTPN4-209ENST00000469511 HOXD11P31277 338 aaPredicted RBP10.41□□□□□ -0.74
PTPN4-209ENST00000469511 TRHP20396 242 aaPredicted RBP10.38□□□□□ -0.75
PTPN4-209ENST00000469511 CHD1O14646 1710 aa10.36□□□□□ -0.75
PTPN4-209ENST00000469511 ARAP1Q96P48 1450 aa10.35□□□□□ -0.75
PTPN4-209ENST00000469511 PRDM2Q13029 1718 aa10.33□□□□□ -0.76
PTPN4-209ENST00000469511 EIF4G3O43432 1585 aaKnown RBP10.31□□□□□ -0.76
PTPN4-209ENST00000469511 IFT140Q96RY7 1462 aa10.3□□□□□ -0.76
PTPN4-209ENST00000469511 TOP2AP11388 1531 aaKnown RBP10.28□□□□□ -0.76
PTPN4-209ENST00000469511 TOPBP1Q92547 1522 aa10.28□□□□□ -0.76
PTPN4-209ENST00000469511 RSF1Q96T23 1441 aaPredicted RBP10.28□□□□□ -0.76
PTPN4-209ENST00000469511 AQRO60306 1485 aaKnown RBP eCLIP10.28□□□□□ -0.76
PTPN4-209ENST00000469511 ZBTB22O15209 634 aa10.27□□□□□ -0.77
PTPN4-209ENST00000469511 FBLN2P98095 1184 aa10.25□□□□□ -0.77
PTPN4-209ENST00000469511 TARBP1Q13395 1621 aaKnown RBP10.24□□□□□ -0.77
PTPN4-209ENST00000469511 CCDC88BA6NC98 1476 aa10.23□□□□□ -0.77
PTPN4-209ENST00000469511 FOXD4L1Q9NU39 408 aa10.2□□□□□ -0.78
PTPN4-209ENST00000469511 DNMBPQ6XZF7 1577 aa10.19□□□□□ -0.78
PTPN4-209ENST00000469511 RAD54L2Q9Y4B4 1467 aa10.18□□□□□ -0.78
PTPN4-209ENST00000469511 CLASP1Q7Z460 1538 aa10.16□□□□□ -0.78
PTPN4-209ENST00000469511 POLA1P09884 1462 aaPredicted RBP10.16□□□□□ -0.78
PTPN4-209ENST00000469511 TDRD9Q8NDG6 1382 aaKnown RBP10.15□□□□□ -0.78
PTPN4-209ENST00000469511 ABCC8Q09428 1581 aa10.13□□□□□ -0.79
PTPN4-209ENST00000469511 SNAPC4Q5SXM2 1469 aa10.12□□□□□ -0.79
PTPN4-209ENST00000469511 SOGA1O94964 1423 aa10.09□□□□□ -0.79
PTPN4-209ENST00000469511 SLC4A2P04920 1241 aa10.09□□□□□ -0.79
PTPN4-209ENST00000469511 ERCC6L2Q5T890 1561 aa10.09□□□□□ -0.79
PTPN4-209ENST00000469511 SYNJ1O43426 1573 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 176.8 ms