RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 NISCHQ9Y2I1 1504 aa36.74■■■■□ 3.47
MCF2L-221ENST00000469415 SHROOM4Q9ULL8 1493 aa32.17■■■□□ 2.74
MCF2L-221ENST00000469415 DCAF8L2P0C7V8 631 aa31.73■■■□□ 2.67
MCF2L-221ENST00000469415 SUPT5HO00267 1087 aaKnown RBP31.52■■■□□ 2.64
MCF2L-221ENST00000469415 ZCCHC6Q5VYS8 1495 aaKnown RBP30.94■■■□□ 2.54
MCF2L-221ENST00000469415 CCDC180Q9P1Z9 1646 aa30.83■■■□□ 2.53
MCF2L-221ENST00000469415 CHIC1Q5VXU3 224 aa30.13■■■□□ 2.41
MCF2L-221ENST00000469415 MYO15BQ96JP2 1530 aa29.88■■■□□ 2.37
MCF2L-221ENST00000469415 DCAF1Q9Y4B6 1507 aa29.7■■■□□ 2.34
MCF2L-221ENST00000469415 ABCC9O60706 1549 aa29.67■■■□□ 2.34
MCF2L-221ENST00000469415 LOC105371045A0A1W2PR82 267 aa29.6■■■□□ 2.33
MCF2L-221ENST00000469415 SCRIBQ14160 1630 aa29.58■■■□□ 2.33
MCF2L-221ENST00000469415 EHMT2Q96KQ7 1210 aa29.4■■■□□ 2.3
MCF2L-221ENST00000469415 PCGF6Q9BYE7 350 aa29.39■■■□□ 2.3
MCF2L-221ENST00000469415 FAM9AQ8IZU1 332 aaPredicted RBP29.29■■■□□ 2.28
MCF2L-221ENST00000469415 RSF1Q96T23 1441 aaPredicted RBP29.2■■■□□ 2.27
MCF2L-221ENST00000469415 TRIM41Q8WV44 630 aa29.1■■■□□ 2.25
MCF2L-221ENST00000469415 CECR2Q9BXF3 1484 aa29.01■■■□□ 2.23
MCF2L-221ENST00000469415 HRCP23327 699 aa28.88■■■□□ 2.21
MCF2L-221ENST00000469415 RB1CC1Q8TDY2 1594 aa28.86■■■□□ 2.21
MCF2L-221ENST00000469415 PPARGC1BQ86YN6 1023 aaKnown RBP28.8■■■□□ 2.2
MCF2L-221ENST00000469415 NACADO15069 1562 aa28.78■■■□□ 2.2
MCF2L-221ENST00000469415 MROH2BQ7Z745 1585 aa28.74■■■□□ 2.19
MCF2L-221ENST00000469415 PABPN1Q86U42 306 aaKnown RBP eCLIP28.67■■■□□ 2.182e-7■■■□□ 15.6
MCF2L-221ENST00000469415 WIZO95785 1651 aa28.54■■■□□ 2.16
MCF2L-221ENST00000469415 TRIM26Q12899 539 aaPredicted RBP28.47■■■□□ 2.15
MCF2L-221ENST00000469415 TTBK1Q5TCY1 1321 aaPredicted RBP28.32■■■□□ 2.12
MCF2L-221ENST00000469415 BAZ1AQ9NRL2 1556 aaPredicted RBP28.17■■■□□ 2.1
MCF2L-221ENST00000469415 ABCC8Q09428 1581 aa28.05■■■□□ 2.08
MCF2L-221ENST00000469415 CCDC88BA6NC98 1476 aa28.02■■■□□ 2.08
MCF2L-221ENST00000469415 SMARCA4P51532 1647 aa27.95■■■□□ 2.06
MCF2L-221ENST00000469415 UNC13AQ9UPW8 1703 aa27.9■■■□□ 2.06
MCF2L-221ENST00000469415 UBTFP17480 764 aaKnown RBP27.89■■■□□ 2.06
MCF2L-221ENST00000469415 TOP2AP11388 1531 aaKnown RBP27.86■■■□□ 2.05
MCF2L-221ENST00000469415 RANGAP1P46060 587 aaPredicted RBP27.85■■■□□ 2.05
MCF2L-221ENST00000469415 SOGA1O94964 1423 aa27.84■■■□□ 2.05
MCF2L-221ENST00000469415 SMARCA2P51531 1590 aa27.78■■■□□ 2.04
MCF2L-221ENST00000469415 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.78■■■□□ 2.04
MCF2L-221ENST00000469415 RUSC2Q8N2Y8 1516 aa27.72■■■□□ 2.03
MCF2L-221ENST00000469415 BICRAQ9NZM4 1560 aa27.71■■■□□ 2.03
MCF2L-221ENST00000469415 CSRNP3Q8WYN3 585 aa27.68■■■□□ 2.02
MCF2L-221ENST00000469415 EIF4G1Q04637 1599 aaKnown RBP27.66■■■□□ 2.02
MCF2L-221ENST00000469415 CCER1Q8TC90 406 aaPredicted RBP27.6■■■□□ 2.01
MCF2L-221ENST00000469415 ZEB1P37275 1124 aaPredicted RBP27.57■■■□□ 2
MCF2L-221ENST00000469415 CEP162Q5TB80 1403 aa27.51■■□□□ 1.99
MCF2L-221ENST00000469415 WRNQ14191 1432 aaPredicted RBP eCLIP27.5■■□□□ 1.99
MCF2L-221ENST00000469415 ATAD2BQ9ULI0 1458 aa27.43■■□□□ 1.98
MCF2L-221ENST00000469415 BAZ1BQ9UIG0 1483 aaKnown RBP27.43■■□□□ 1.98
MCF2L-221ENST00000469415 TNIKQ9UKE5 1360 aa27.32■■□□□ 1.96
MCF2L-221ENST00000469415 HNRNPUL2Q1KMD3 747 aaKnown RBP27.29■■□□□ 1.96
MCF2L-221ENST00000469415 SYNJ1O43426 1573 aa27.24■■□□□ 1.95
MCF2L-221ENST00000469415 GOLGA3Q08378 1498 aa27.19■■□□□ 1.94
MCF2L-221ENST00000469415 EEA1Q15075 1411 aa27.16■■□□□ 1.94
MCF2L-221ENST00000469415 APLP2Q06481 763 aa27.14■■□□□ 1.94
MCF2L-221ENST00000469415 PEG3Q9GZU2 1588 aa27.12■■□□□ 1.93
MCF2L-221ENST00000469415 CLIP1P30622 1438 aa27.07■■□□□ 1.92
MCF2L-221ENST00000469415 RAPGEF2Q9Y4G8 1499 aa27.06■■□□□ 1.92
MCF2L-221ENST00000469415 CEP164Q9UPV0 1460 aa27.02■■□□□ 1.92
MCF2L-221ENST00000469415 DIEXFQ68CQ4 756 aaKnown RBP26.83■■□□□ 1.89
MCF2L-221ENST00000469415 ITGAEP38570 1179 aa26.8■■□□□ 1.88
MCF2L-221ENST00000469415 NCAPD3P42695 1498 aa26.79■■□□□ 1.88
MCF2L-221ENST00000469415 VPS8Q8N3P4 1428 aa26.76■■□□□ 1.88
MCF2L-221ENST00000469415 KANK4Q5T7N3 995 aaPredicted RBP26.75■■□□□ 1.87
MCF2L-221ENST00000469415 KIF21BO75037 1637 aa26.72■■□□□ 1.87
MCF2L-221ENST00000469415 TOP2BQ02880 1626 aa26.72■■□□□ 1.87
MCF2L-221ENST00000469415 ATP1B4Q9UN42 357 aaPredicted RBP26.71■■□□□ 1.87
MCF2L-221ENST00000469415 CUX1P39880 1505 aa26.7■■□□□ 1.86
MCF2L-221ENST00000469415 P3H3Q8IVL6 736 aa26.69■■□□□ 1.86
MCF2L-221ENST00000469415 SCAF1Q9H7N4 1312 aaKnown RBP26.66■■□□□ 1.86
MCF2L-221ENST00000469415 KIF27Q86VH2 1401 aa26.63■■□□□ 1.85
MCF2L-221ENST00000469415 YTHDC1Q96MU7 727 aaKnown RBP26.62■■□□□ 1.85
MCF2L-221ENST00000469415 CFTRP13569 1480 aa26.58■■□□□ 1.85
MCF2L-221ENST00000469415 HMGXB3Q12766 1538 aa26.58■■□□□ 1.85
MCF2L-221ENST00000469415 ZNF316A6NFI3 1004 aaPredicted RBP26.55■■□□□ 1.84
MCF2L-221ENST00000469415 CUX2O14529 1486 aa26.55■■□□□ 1.84
MCF2L-221ENST00000469415 PRXQ9BXM0 1461 aa26.54■■□□□ 1.84
MCF2L-221ENST00000469415 NEUROD1Q13562 356 aa26.53■■□□□ 1.84
MCF2L-221ENST00000469415 ARAP1Q96P48 1450 aa26.5■■□□□ 1.83
MCF2L-221ENST00000469415 CADPSQ9ULU8 1353 aa26.49■■□□□ 1.83
MCF2L-221ENST00000469415 BIVM-ERCC5R4GMW8 1640 aa26.47■■□□□ 1.83
MCF2L-221ENST00000469415 DNAJC5BQ9UF47 199 aa26.44■■□□□ 1.82
MCF2L-221ENST00000469415 IGF1RP08069 1367 aa26.42■■□□□ 1.82
MCF2L-221ENST00000469415 CARMIL1Q5VZK9 1371 aa26.37■■□□□ 1.81
MCF2L-221ENST00000469415 ACIN1Q9UKV3 1341 aaKnown RBP26.37■■□□□ 1.81
MCF2L-221ENST00000469415 FGD5Q6ZNL6 1462 aa26.35■■□□□ 1.81
MCF2L-221ENST00000469415 MIER1Q8N108 512 aa26.34■■□□□ 1.81
MCF2L-221ENST00000469415 NESP48681 1621 aa26.34■■□□□ 1.81
MCF2L-221ENST00000469415 CC2D2AQ9P2K1 1620 aa26.33■■□□□ 1.81
MCF2L-221ENST00000469415 ERICH3Q5RHP9 1530 aa26.32■■□□□ 1.8
MCF2L-221ENST00000469415 ARHGAP35Q9NRY4 1499 aa26.32■■□□□ 1.8
MCF2L-221ENST00000469415 FAM50AQ14320 339 aaKnown RBP26.31■■□□□ 1.8
MCF2L-221ENST00000469415 RAD54L2Q9Y4B4 1467 aa26.29■■□□□ 1.8
MCF2L-221ENST00000469415 GTF3C3Q9Y5Q9 886 aa26.28■■□□□ 1.8
MCF2L-221ENST00000469415 CENPBP07199 599 aaPredicted RBP26.26■■□□□ 1.79
MCF2L-221ENST00000469415 FANCD2Q9BXW9 1451 aa26.25■■□□□ 1.79
MCF2L-221ENST00000469415 DHX57Q6P158 1386 aaKnown RBP26.18■■□□□ 1.78
MCF2L-221ENST00000469415 CCNB3Q8WWL7 1395 aa26.17■■□□□ 1.78
MCF2L-221ENST00000469415 PELP1Q8IZL8 1130 aaKnown RBP26.14■■□□□ 1.77
MCF2L-221ENST00000469415 TDRD9Q8NDG6 1382 aaKnown RBP26.14■■□□□ 1.77
MCF2L-221ENST00000469415 FHOD3Q2V2M9 1422 aa26.1■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms