RNA–Protein interactions for RNA: ENST00000466154.5

SLX4-202, Transcript of SLX4 structure-specific endonuclease subunit, humanhuman

TSL 1 (best)

Gene SLX4, Length 3,228 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLX4-202ENST00000466154 NISCHQ9Y2I1 1504 aa33.67■■■□□ 2.98
SLX4-202ENST00000466154 SHROOM4Q9ULL8 1493 aa29.32■■■□□ 2.28
SLX4-202ENST00000466154 DCAF8L2P0C7V8 631 aa28.86■■■□□ 2.21
SLX4-202ENST00000466154 SUPT5HO00267 1087 aaKnown RBP28.74■■■□□ 2.19
SLX4-202ENST00000466154 ZCCHC6Q5VYS8 1495 aaKnown RBP28.38■■■□□ 2.13
SLX4-202ENST00000466154 CCDC180Q9P1Z9 1646 aa28.38■■■□□ 2.13
SLX4-202ENST00000466154 CHIC1Q5VXU3 224 aa27.54■■■□□ 2
SLX4-202ENST00000466154 MYO15BQ96JP2 1530 aa27.32■■□□□ 1.96
SLX4-202ENST00000466154 DCAF1Q9Y4B6 1507 aa27.31■■□□□ 1.96
SLX4-202ENST00000466154 SCRIBQ14160 1630 aa27.09■■□□□ 1.93
SLX4-202ENST00000466154 ABCC9O60706 1549 aa27.06■■□□□ 1.92
SLX4-202ENST00000466154 LOC105371045A0A1W2PR82 267 aa26.97■■□□□ 1.91
SLX4-202ENST00000466154 PCGF6Q9BYE7 350 aa26.86■■□□□ 1.89
SLX4-202ENST00000466154 RSF1Q96T23 1441 aaPredicted RBP26.72■■□□□ 1.87
SLX4-202ENST00000466154 EHMT2Q96KQ7 1210 aa26.71■■□□□ 1.87
SLX4-202ENST00000466154 FAM9AQ8IZU1 332 aaPredicted RBP26.68■■□□□ 1.86
SLX4-202ENST00000466154 TRIM41Q8WV44 630 aa26.6■■□□□ 1.85
SLX4-202ENST00000466154 CECR2Q9BXF3 1484 aa26.48■■□□□ 1.83
SLX4-202ENST00000466154 HRCP23327 699 aa26.48■■□□□ 1.83
SLX4-202ENST00000466154 RB1CC1Q8TDY2 1594 aa26.44■■□□□ 1.82
SLX4-202ENST00000466154 NACADO15069 1562 aa26.43■■□□□ 1.82
SLX4-202ENST00000466154 MROH2BQ7Z745 1585 aa26.29■■□□□ 1.8
SLX4-202ENST00000466154 PPARGC1BQ86YN6 1023 aaKnown RBP26.27■■□□□ 1.8
SLX4-202ENST00000466154 WIZO95785 1651 aa26.14■■□□□ 1.78
SLX4-202ENST00000466154 TRIM26Q12899 539 aaPredicted RBP26.1■■□□□ 1.77
SLX4-202ENST00000466154 PABPN1Q86U42 306 aaKnown RBP eCLIP26.07■■□□□ 1.76
SLX4-202ENST00000466154 BAZ1AQ9NRL2 1556 aaPredicted RBP25.86■■□□□ 1.73
SLX4-202ENST00000466154 TTBK1Q5TCY1 1321 aaPredicted RBP25.77■■□□□ 1.72
SLX4-202ENST00000466154 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
SLX4-202ENST00000466154 CCDC88BA6NC98 1476 aa25.64■■□□□ 1.7
SLX4-202ENST00000466154 SMARCA4P51532 1647 aa25.64■■□□□ 1.69
SLX4-202ENST00000466154 UNC13AQ9UPW8 1703 aa25.6■■□□□ 1.69
SLX4-202ENST00000466154 TOP2AP11388 1531 aaKnown RBP25.58■■□□□ 1.69
SLX4-202ENST00000466154 UBTFP17480 764 aaKnown RBP25.48■■□□□ 1.67
SLX4-202ENST00000466154 SMARCA2P51531 1590 aa25.47■■□□□ 1.67
SLX4-202ENST00000466154 SOGA1O94964 1423 aa25.43■■□□□ 1.66
SLX4-202ENST00000466154 EIF4G1Q04637 1599 aaKnown RBP25.4■■□□□ 1.66
SLX4-202ENST00000466154 ZEB1P37275 1124 aaPredicted RBP25.38■■□□□ 1.65
SLX4-202ENST00000466154 BICRAQ9NZM4 1560 aa25.35■■□□□ 1.65
SLX4-202ENST00000466154 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.35■■□□□ 1.65
SLX4-202ENST00000466154 RANGAP1P46060 587 aaPredicted RBP25.33■■□□□ 1.65
SLX4-202ENST00000466154 CSRNP3Q8WYN3 585 aa25.31■■□□□ 1.64
SLX4-202ENST00000466154 RUSC2Q8N2Y8 1516 aa25.3■■□□□ 1.64
SLX4-202ENST00000466154 CCER1Q8TC90 406 aaPredicted RBP25.26■■□□□ 1.63
SLX4-202ENST00000466154 CEP162Q5TB80 1403 aa25.2■■□□□ 1.63
SLX4-202ENST00000466154 WRNQ14191 1432 aaPredicted RBP eCLIP25.18■■□□□ 1.62
SLX4-202ENST00000466154 BAZ1BQ9UIG0 1483 aaKnown RBP25.13■■□□□ 1.61
SLX4-202ENST00000466154 ATAD2BQ9ULI0 1458 aa25.1■■□□□ 1.61
SLX4-202ENST00000466154 TNIKQ9UKE5 1360 aa25.05■■□□□ 1.6
SLX4-202ENST00000466154 EEA1Q15075 1411 aa24.98■■□□□ 1.59
SLX4-202ENST00000466154 GOLGA3Q08378 1498 aa24.96■■□□□ 1.59
SLX4-202ENST00000466154 SYNJ1O43426 1573 aa24.95■■□□□ 1.58
SLX4-202ENST00000466154 PEG3Q9GZU2 1588 aa24.92■■□□□ 1.58
SLX4-202ENST00000466154 HNRNPUL2Q1KMD3 747 aaKnown RBP24.9■■□□□ 1.58
SLX4-202ENST00000466154 APLP2Q06481 763 aa24.87■■□□□ 1.57
SLX4-202ENST00000466154 CEP164Q9UPV0 1460 aa24.8■■□□□ 1.56
SLX4-202ENST00000466154 CLIP1P30622 1438 aa24.79■■□□□ 1.56
SLX4-202ENST00000466154 RAPGEF2Q9Y4G8 1499 aa24.75■■□□□ 1.55
SLX4-202ENST00000466154 DIEXFQ68CQ4 756 aaKnown RBP24.59■■□□□ 1.53
SLX4-202ENST00000466154 KIF21BO75037 1637 aa24.57■■□□□ 1.52
SLX4-202ENST00000466154 VPS8Q8N3P4 1428 aa24.55■■□□□ 1.52
SLX4-202ENST00000466154 TOP2BQ02880 1626 aa24.53■■□□□ 1.52
SLX4-202ENST00000466154 NCAPD3P42695 1498 aa24.53■■□□□ 1.52
SLX4-202ENST00000466154 CUX1P39880 1505 aa24.44■■□□□ 1.5
SLX4-202ENST00000466154 ITGAEP38570 1179 aa24.42■■□□□ 1.5
SLX4-202ENST00000466154 SCAF1Q9H7N4 1312 aaKnown RBP24.42■■□□□ 1.5
SLX4-202ENST00000466154 HMGXB3Q12766 1538 aa24.41■■□□□ 1.5
SLX4-202ENST00000466154 KANK4Q5T7N3 995 aaPredicted RBP24.4■■□□□ 1.5
SLX4-202ENST00000466154 KIF27Q86VH2 1401 aa24.4■■□□□ 1.5
SLX4-202ENST00000466154 ATP1B4Q9UN42 357 aaPredicted RBP24.35■■□□□ 1.49
SLX4-202ENST00000466154 CFTRP13569 1480 aa24.35■■□□□ 1.49
SLX4-202ENST00000466154 ZNF316A6NFI3 1004 aaPredicted RBP24.34■■□□□ 1.49
SLX4-202ENST00000466154 BIVM-ERCC5R4GMW8 1640 aa24.34■■□□□ 1.49
SLX4-202ENST00000466154 YTHDC1Q96MU7 727 aaKnown RBP24.32■■□□□ 1.48
SLX4-202ENST00000466154 PRXQ9BXM0 1461 aa24.32■■□□□ 1.48
SLX4-202ENST00000466154 P3H3Q8IVL6 736 aa24.3■■□□□ 1.48
SLX4-202ENST00000466154 CUX2O14529 1486 aa24.28■■□□□ 1.48
SLX4-202ENST00000466154 NEUROD1Q13562 356 aa24.27■■□□□ 1.48
SLX4-202ENST00000466154 ARAP1Q96P48 1450 aa24.25■■□□□ 1.47
SLX4-202ENST00000466154 CADPSQ9ULU8 1353 aa24.23■■□□□ 1.47
SLX4-202ENST00000466154 ERICH3Q5RHP9 1530 aa24.2■■□□□ 1.46
SLX4-202ENST00000466154 ACIN1Q9UKV3 1341 aaKnown RBP24.19■■□□□ 1.46
SLX4-202ENST00000466154 CENPBP07199 599 aaPredicted RBP24.15■■□□□ 1.46
SLX4-202ENST00000466154 IGF1RP08069 1367 aa24.14■■□□□ 1.46
SLX4-202ENST00000466154 CARMIL1Q5VZK9 1371 aa24.12■■□□□ 1.45
SLX4-202ENST00000466154 FGD5Q6ZNL6 1462 aa24.11■■□□□ 1.45
SLX4-202ENST00000466154 ARHGAP35Q9NRY4 1499 aa24.1■■□□□ 1.45
SLX4-202ENST00000466154 CC2D2AQ9P2K1 1620 aa24.1■■□□□ 1.45
SLX4-202ENST00000466154 MIER1Q8N108 512 aa24.08■■□□□ 1.45
SLX4-202ENST00000466154 GTF3C3Q9Y5Q9 886 aa24.07■■□□□ 1.44
SLX4-202ENST00000466154 FAM50AQ14320 339 aaKnown RBP24.04■■□□□ 1.44
SLX4-202ENST00000466154 FANCD2Q9BXW9 1451 aa24.02■■□□□ 1.44
SLX4-202ENST00000466154 NESP48681 1621 aa24.01■■□□□ 1.43
SLX4-202ENST00000466154 RAD54L2Q9Y4B4 1467 aa24■■□□□ 1.43
SLX4-202ENST00000466154 CCNB3Q8WWL7 1395 aa23.98■■□□□ 1.43
SLX4-202ENST00000466154 DHX57Q6P158 1386 aaKnown RBP23.98■■□□□ 1.43
SLX4-202ENST00000466154 DNAJC5BQ9UF47 199 aa23.93■■□□□ 1.42
SLX4-202ENST00000466154 PELP1Q8IZL8 1130 aaKnown RBP23.89■■□□□ 1.41
SLX4-202ENST00000466154 FHOD3Q2V2M9 1422 aa23.86■■□□□ 1.41
SLX4-202ENST00000466154 RRBP1Q9P2E9 1410 aaKnown RBP23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms