RNA–Protein interactions for RNA: ENST00000465421.5

SIK3-207, Transcript of SIK family kinase 3, humanhuman

TSL 2

Gene SIK3, Length 3,459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-207ENST00000465421 NISCHQ9Y2I1 1504 aa13.4□□□□□ -0.26
SIK3-207ENST00000465421 CCDC180Q9P1Z9 1646 aa11.72□□□□□ -0.53
SIK3-207ENST00000465421 ZCCHC6Q5VYS8 1495 aaKnown RBP11.37□□□□□ -0.59
SIK3-207ENST00000465421 DCAF1Q9Y4B6 1507 aa11.23□□□□□ -0.61
SIK3-207ENST00000465421 HRCP23327 699 aa11.02□□□□□ -0.65
SIK3-207ENST00000465421 MYO15BQ96JP2 1530 aa11□□□□□ -0.65
SIK3-207ENST00000465421 NACADO15069 1562 aa10.81□□□□□ -0.68
SIK3-207ENST00000465421 SHROOM4Q9ULL8 1493 aa10.81□□□□□ -0.68
SIK3-207ENST00000465421 SUPT5HO00267 1087 aaKnown RBP10.78□□□□□ -0.68
SIK3-207ENST00000465421 ABCC9O60706 1549 aa10.77□□□□□ -0.69
SIK3-207ENST00000465421 PPARGC1BQ86YN6 1023 aaKnown RBP10.72□□□□□ -0.69
SIK3-207ENST00000465421 PELP1Q8IZL8 1130 aaKnown RBP10.71□□□□□ -0.69
SIK3-207ENST00000465421 RB1CC1Q8TDY2 1594 aa10.71□□□□□ -0.69
SIK3-207ENST00000465421 PCGF6Q9BYE7 350 aa10.67□□□□□ -0.7
SIK3-207ENST00000465421 CHIC1Q5VXU3 224 aa10.61□□□□□ -0.71
SIK3-207ENST00000465421 SCRIBQ14160 1630 aa10.58□□□□□ -0.72
SIK3-207ENST00000465421 MYT1Q01538 1121 aa10.53□□□□□ -0.72
SIK3-207ENST00000465421 TTBK1Q5TCY1 1321 aaPredicted RBP10.51□□□□□ -0.73
SIK3-207ENST00000465421 DCAF8L2P0C7V8 631 aa10.5□□□□□ -0.73
SIK3-207ENST00000465421 SLC24A1O60721 1099 aa10.48□□□□□ -0.73
SIK3-207ENST00000465421 UNC13AQ9UPW8 1703 aa10.46□□□□□ -0.73
SIK3-207ENST00000465421 SCAF1Q9H7N4 1312 aaKnown RBP10.45□□□□□ -0.74
SIK3-207ENST00000465421 RSF1Q96T23 1441 aaPredicted RBP10.45□□□□□ -0.74
SIK3-207ENST00000465421 TRIM26Q12899 539 aaPredicted RBP10.38□□□□□ -0.75
SIK3-207ENST00000465421 BAZ1AQ9NRL2 1556 aaPredicted RBP10.36□□□□□ -0.75
SIK3-207ENST00000465421 EIF4G1Q04637 1599 aaKnown RBP10.34□□□□□ -0.75
SIK3-207ENST00000465421 ZEB1P37275 1124 aaPredicted RBP10.32□□□□□ -0.76
SIK3-207ENST00000465421 MROH2BQ7Z745 1585 aa10.32□□□□□ -0.76
SIK3-207ENST00000465421 BICRAQ9NZM4 1560 aa10.3□□□□□ -0.76
SIK3-207ENST00000465421 LOC105371045A0A1W2PR82 267 aa10.3□□□□□ -0.76
SIK3-207ENST00000465421 APLP2Q06481 763 aa10.29□□□□□ -0.76
SIK3-207ENST00000465421 CECR2Q9BXF3 1484 aa10.29□□□□□ -0.76
SIK3-207ENST00000465421 WIZO95785 1651 aa10.28□□□□□ -0.76
SIK3-207ENST00000465421 SMARCA4P51532 1647 aa10.27□□□□□ -0.76
SIK3-207ENST00000465421 PEG3Q9GZU2 1588 aa10.24□□□□□ -0.77
SIK3-207ENST00000465421 EHMT2Q96KQ7 1210 aa10.24□□□□□ -0.77
SIK3-207ENST00000465421 TOP2AP11388 1531 aaKnown RBP10.24□□□□□ -0.77
SIK3-207ENST00000465421 ACIN1Q9UKV3 1341 aaKnown RBP10.17□□□□□ -0.78
SIK3-207ENST00000465421 SMARCA2P51531 1590 aa10.14□□□□□ -0.79
SIK3-207ENST00000465421 NEUROD1Q13562 356 aa10.12□□□□□ -0.79
SIK3-207ENST00000465421 PRKCSHP14314 528 aaPredicted RBP10.1□□□□□ -0.79
SIK3-207ENST00000465421 FAM9AQ8IZU1 332 aaPredicted RBP10.07□□□□□ -0.8
SIK3-207ENST00000465421 GTF3C3Q9Y5Q9 886 aa10.04□□□□□ -0.8
SIK3-207ENST00000465421 CCDC88BA6NC98 1476 aa10.03□□□□□ -0.8
SIK3-207ENST00000465421 PABPN1Q86U42 306 aaKnown RBP eCLIP10.02□□□□□ -0.8
SIK3-207ENST00000465421 DAXXQ9UER7 740 aaPredicted RBP10.02□□□□□ -0.81
SIK3-207ENST00000465421 CENPBP07199 599 aaPredicted RBP9.97□□□□□ -0.81
SIK3-207ENST00000465421 HMGXB3Q12766 1538 aa9.95□□□□□ -0.82
SIK3-207ENST00000465421 ATAD2BQ9ULI0 1458 aa9.94□□□□□ -0.82
SIK3-207ENST00000465421 DIEXFQ68CQ4 756 aaKnown RBP9.92□□□□□ -0.82
SIK3-207ENST00000465421 NCAPD3P42695 1498 aa9.91□□□□□ -0.82
SIK3-207ENST00000465421 PRDM2Q13029 1718 aa9.91□□□□□ -0.82
SIK3-207ENST00000465421 TRIM41Q8WV44 630 aa9.89□□□□□ -0.83
SIK3-207ENST00000465421 ABCC8Q09428 1581 aa9.88□□□□□ -0.83
SIK3-207ENST00000465421 EEA1Q15075 1411 aa9.88□□□□□ -0.83
SIK3-207ENST00000465421 BIVM-ERCC5R4GMW8 1640 aa9.87□□□□□ -0.83
SIK3-207ENST00000465421 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.87□□□□□ -0.83
SIK3-207ENST00000465421 CC2D2AQ9P2K1 1620 aa9.87□□□□□ -0.83
SIK3-207ENST00000465421 BAZ1BQ9UIG0 1483 aaKnown RBP9.86□□□□□ -0.83
SIK3-207ENST00000465421 KIF21BO75037 1637 aa9.83□□□□□ -0.84
SIK3-207ENST00000465421 SYNJ1O43426 1573 aa9.83□□□□□ -0.84
SIK3-207ENST00000465421 CCER1Q8TC90 406 aaPredicted RBP9.83□□□□□ -0.84
SIK3-207ENST00000465421 TOP2BQ02880 1626 aa9.82□□□□□ -0.84
SIK3-207ENST00000465421 YTHDC1Q96MU7 727 aaKnown RBP9.81□□□□□ -0.84
SIK3-207ENST00000465421 WRNQ14191 1432 aaPredicted RBP eCLIP9.81□□□□□ -0.84
SIK3-207ENST00000465421 ERICH6Q7L0X2 663 aa9.79□□□□□ -0.84
SIK3-207ENST00000465421 ZNF316A6NFI3 1004 aaPredicted RBP9.74□□□□□ -0.85
SIK3-207ENST00000465421 TNIKQ9UKE5 1360 aa9.74□□□□□ -0.85
SIK3-207ENST00000465421 SOGA1O94964 1423 aa9.72□□□□□ -0.85
SIK3-207ENST00000465421 GOLGA3Q08378 1498 aa9.71□□□□□ -0.86
SIK3-207ENST00000465421 CFTRP13569 1480 aa9.7□□□□□ -0.86
SIK3-207ENST00000465421 ERICH3Q5RHP9 1530 aa9.69□□□□□ -0.86
SIK3-207ENST00000465421 RUSC2Q8N2Y8 1516 aa9.68□□□□□ -0.86
SIK3-207ENST00000465421 CEP164Q9UPV0 1460 aa9.68□□□□□ -0.86
SIK3-207ENST00000465421 MIER1Q8N108 512 aa9.68□□□□□ -0.86
SIK3-207ENST00000465421 CEP162Q5TB80 1403 aa9.66□□□□□ -0.86
SIK3-207ENST00000465421 CUX1P39880 1505 aa9.65□□□□□ -0.86
SIK3-207ENST00000465421 LAMC3Q9Y6N6 1575 aa9.64□□□□□ -0.87
SIK3-207ENST00000465421 CLSPNQ9HAW4 1339 aa9.62□□□□□ -0.87
SIK3-207ENST00000465421 BCL11AQ9H165 835 aa9.62□□□□□ -0.87
SIK3-207ENST00000465421 ANP32EQ9BTT0 268 aa9.61□□□□□ -0.87
SIK3-207ENST00000465421 PRXQ9BXM0 1461 aa9.61□□□□□ -0.87
SIK3-207ENST00000465421 CSRNP3Q8WYN3 585 aa9.61□□□□□ -0.87
SIK3-207ENST00000465421 CADPSQ9ULU8 1353 aa9.59□□□□□ -0.87
SIK3-207ENST00000465421 SUPT16HQ9Y5B9 1047 aaKnown RBP9.59□□□□□ -0.87
SIK3-207ENST00000465421 TSHZ2Q9NRE2 1034 aa9.57□□□□□ -0.88
SIK3-207ENST00000465421 WDR97A6NE52 1622 aa9.55□□□□□ -0.88
SIK3-207ENST00000465421 RAPGEF2Q9Y4G8 1499 aa9.54□□□□□ -0.88
SIK3-207ENST00000465421 VPS8Q8N3P4 1428 aa9.52□□□□□ -0.89
SIK3-207ENST00000465421 DNMBPQ6XZF7 1577 aa9.51□□□□□ -0.89
SIK3-207ENST00000465421 PDS5BQ9NTI5 1447 aa9.5□□□□□ -0.89
SIK3-207ENST00000465421 CLIP1P30622 1438 aa9.49□□□□□ -0.89
SIK3-207ENST00000465421 RANGAP1P46060 587 aaPredicted RBP9.48□□□□□ -0.89
SIK3-207ENST00000465421 KIF27Q86VH2 1401 aa9.48□□□□□ -0.89
SIK3-207ENST00000465421 ARAP1Q96P48 1450 aa9.48□□□□□ -0.89
SIK3-207ENST00000465421 HNRNPUL2Q1KMD3 747 aaKnown RBP9.48□□□□□ -0.89
SIK3-207ENST00000465421 NCBP3Q53F19 620 aaKnown RBP9.47□□□□□ -0.89
SIK3-207ENST00000465421 FANCD2Q9BXW9 1451 aa9.47□□□□□ -0.89
SIK3-207ENST00000465421 DNAJC5BQ9UF47 199 aa9.47□□□□□ -0.89
SIK3-207ENST00000465421 CUL7Q14999 1698 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms