RNA–Protein interactions for RNA: ENST00000460633.1

HLA-DQA1-205, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

Gene HLA-DQA1, Length 5,450 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-205ENST00000460633 NISCHQ9Y2I1 1504 aa12.26□□□□□ -0.45
HLA-DQA1-205ENST00000460633 CCDC180Q9P1Z9 1646 aa10.97□□□□□ -0.65
HLA-DQA1-205ENST00000460633 DCAF8L2P0C7V8 631 aa10.77□□□□□ -0.69
HLA-DQA1-205ENST00000460633 FAM9AQ8IZU1 332 aaPredicted RBP10.73□□□□□ -0.69
HLA-DQA1-205ENST00000460633 ABCC9O60706 1549 aa10.41□□□□□ -0.74
HLA-DQA1-205ENST00000460633 RB1CC1Q8TDY2 1594 aa10.37□□□□□ -0.75
HLA-DQA1-205ENST00000460633 NACADO15069 1562 aa10.36□□□□□ -0.75
HLA-DQA1-205ENST00000460633 MYO15BQ96JP2 1530 aa10.31□□□□□ -0.76
HLA-DQA1-205ENST00000460633 DCAF1Q9Y4B6 1507 aa10.28□□□□□ -0.76
HLA-DQA1-205ENST00000460633 ZCCHC6Q5VYS8 1495 aaKnown RBP10.22□□□□□ -0.77
HLA-DQA1-205ENST00000460633 SHROOM4Q9ULL8 1493 aa10.14□□□□□ -0.79
HLA-DQA1-205ENST00000460633 PELP1Q8IZL8 1130 aaKnown RBP10□□□□□ -0.81
HLA-DQA1-205ENST00000460633 MYT1Q01538 1121 aa9.97□□□□□ -0.81
HLA-DQA1-205ENST00000460633 SUPT5HO00267 1087 aaKnown RBP9.89□□□□□ -0.83
HLA-DQA1-205ENST00000460633 SCRIBQ14160 1630 aa9.87□□□□□ -0.83
HLA-DQA1-205ENST00000460633 APLP2Q06481 763 aa9.83□□□□□ -0.84
HLA-DQA1-205ENST00000460633 PABPN1Q86U42 306 aaKnown RBP eCLIP9.75□□□□□ -0.85
HLA-DQA1-205ENST00000460633 BAZ1AQ9NRL2 1556 aaPredicted RBP9.68□□□□□ -0.86
HLA-DQA1-205ENST00000460633 PCGF6Q9BYE7 350 aa9.66□□□□□ -0.86
HLA-DQA1-205ENST00000460633 SMARCA2P51531 1590 aa9.66□□□□□ -0.86
HLA-DQA1-205ENST00000460633 SLC24A1O60721 1099 aa9.66□□□□□ -0.86
HLA-DQA1-205ENST00000460633 MYT1LQ9UL68 1186 aa9.57□□□□□ -0.88
HLA-DQA1-205ENST00000460633 BAZ1BQ9UIG0 1483 aaKnown RBP9.54□□□□□ -0.88
HLA-DQA1-205ENST00000460633 EHMT2Q96KQ7 1210 aa9.52□□□□□ -0.89
HLA-DQA1-205ENST00000460633 EIF4G1Q04637 1599 aaKnown RBP9.47□□□□□ -0.89
HLA-DQA1-205ENST00000460633 SMARCA4P51532 1647 aa9.47□□□□□ -0.89
HLA-DQA1-205ENST00000460633 UNC13AQ9UPW8 1703 aa9.47□□□□□ -0.89
HLA-DQA1-205ENST00000460633 BICRAQ9NZM4 1560 aa9.46□□□□□ -0.89
HLA-DQA1-205ENST00000460633 CECR2Q9BXF3 1484 aa9.46□□□□□ -0.89
HLA-DQA1-205ENST00000460633 HMGXB3Q12766 1538 aa9.44□□□□□ -0.9
HLA-DQA1-205ENST00000460633 HRCP23327 699 aa9.43□□□□□ -0.9
HLA-DQA1-205ENST00000460633 NCAPD3P42695 1498 aa9.42□□□□□ -0.9
HLA-DQA1-205ENST00000460633 TTBK1Q5TCY1 1321 aaPredicted RBP9.41□□□□□ -0.9
HLA-DQA1-205ENST00000460633 CENPBP07199 599 aaPredicted RBP9.4□□□□□ -0.91
HLA-DQA1-205ENST00000460633 ZEB1P37275 1124 aaPredicted RBP9.39□□□□□ -0.91
HLA-DQA1-205ENST00000460633 PDS5BQ9NTI5 1447 aa9.39□□□□□ -0.91
HLA-DQA1-205ENST00000460633 TOP2AP11388 1531 aaKnown RBP9.38□□□□□ -0.91
HLA-DQA1-205ENST00000460633 ATAD2BQ9ULI0 1458 aa9.38□□□□□ -0.91
HLA-DQA1-205ENST00000460633 CC2D2AQ9P2K1 1620 aa9.37□□□□□ -0.91
HLA-DQA1-205ENST00000460633 ERCC6Q03468 1493 aa9.35□□□□□ -0.91
HLA-DQA1-205ENST00000460633 RSF1Q96T23 1441 aaPredicted RBP9.35□□□□□ -0.91
HLA-DQA1-205ENST00000460633 ATP1B4Q9UN42 357 aaPredicted RBP9.34□□□□□ -0.91
HLA-DQA1-205ENST00000460633 ABCC8Q09428 1581 aa9.33□□□□□ -0.92
HLA-DQA1-205ENST00000460633 PEG3Q9GZU2 1588 aa9.32□□□□□ -0.92
HLA-DQA1-205ENST00000460633 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.3□□□□□ -0.92
HLA-DQA1-205ENST00000460633 HNRNPUL2Q1KMD3 747 aaKnown RBP9.3□□□□□ -0.92
HLA-DQA1-205ENST00000460633 ESF1Q9H501 851 aaKnown RBP9.3□□□□□ -0.92
HLA-DQA1-205ENST00000460633 ERICH6Q7L0X2 663 aa9.3□□□□□ -0.92
HLA-DQA1-205ENST00000460633 PPARGC1BQ86YN6 1023 aaKnown RBP9.3□□□□□ -0.92
HLA-DQA1-205ENST00000460633 NPM1P06748 294 aaKnown RBP eCLIP9.29□□□□□ -0.92
HLA-DQA1-205ENST00000460633 MROH2BQ7Z745 1585 aa9.27□□□□□ -0.92
HLA-DQA1-205ENST00000460633 CCER1Q8TC90 406 aaPredicted RBP9.25□□□□□ -0.93
HLA-DQA1-205ENST00000460633 LAMC3Q9Y6N6 1575 aa9.24□□□□□ -0.93
HLA-DQA1-205ENST00000460633 CADPSQ9ULU8 1353 aa9.24□□□□□ -0.93
HLA-DQA1-205ENST00000460633 YTHDC1Q96MU7 727 aaKnown RBP9.23□□□□□ -0.93
HLA-DQA1-205ENST00000460633 CEP164Q9UPV0 1460 aa9.21□□□□□ -0.94
HLA-DQA1-205ENST00000460633 TRIM41Q8WV44 630 aa9.2□□□□□ -0.94
HLA-DQA1-205ENST00000460633 TRIM26Q12899 539 aaPredicted RBP9.19□□□□□ -0.94
HLA-DQA1-205ENST00000460633 WIZO95785 1651 aa9.16□□□□□ -0.94
HLA-DQA1-205ENST00000460633 MRC2Q9UBG0 1479 aa9.13□□□□□ -0.95
HLA-DQA1-205ENST00000460633 CCDC88BA6NC98 1476 aa9.12□□□□□ -0.95
HLA-DQA1-205ENST00000460633 CUX2O14529 1486 aa9.12□□□□□ -0.95
HLA-DQA1-205ENST00000460633 EEA1Q15075 1411 aa9.12□□□□□ -0.95
HLA-DQA1-205ENST00000460633 FANCD2Q9BXW9 1451 aa9.1□□□□□ -0.95
HLA-DQA1-205ENST00000460633 CFTRP13569 1480 aa9.09□□□□□ -0.95
HLA-DQA1-205ENST00000460633 WRNQ14191 1432 aaPredicted RBP eCLIP9.08□□□□□ -0.96
HLA-DQA1-205ENST00000460633 LOC105371045A0A1W2PR82 267 aa9.07□□□□□ -0.96
HLA-DQA1-205ENST00000460633 AEBP2Q6ZN18 517 aaPredicted RBP9.05□□□□□ -0.96
HLA-DQA1-205ENST00000460633 UBTFP17480 764 aaKnown RBP9.05□□□□□ -0.96
HLA-DQA1-205ENST00000460633 CHIC1Q5VXU3 224 aa9.04□□□□□ -0.96
HLA-DQA1-205ENST00000460633 IFT140Q96RY7 1462 aa9.04□□□□□ -0.96
HLA-DQA1-205ENST00000460633 BCANQ96GW7 911 aa9.04□□□□□ -0.96
HLA-DQA1-205ENST00000460633 PRDM2Q13029 1718 aa9.04□□□□□ -0.96
HLA-DQA1-205ENST00000460633 WDR97A6NE52 1622 aa9.03□□□□□ -0.96
HLA-DQA1-205ENST00000460633 FBLN2P98095 1184 aa9.03□□□□□ -0.96
HLA-DQA1-205ENST00000460633 FOXD1Q16676 465 aa9.03□□□□□ -0.96
HLA-DQA1-205ENST00000460633 KIF27Q86VH2 1401 aa9.02□□□□□ -0.97
HLA-DQA1-205ENST00000460633 DNMBPQ6XZF7 1577 aa9□□□□□ -0.97
HLA-DQA1-205ENST00000460633 PRKCSHP14314 528 aaPredicted RBP9□□□□□ -0.97
HLA-DQA1-205ENST00000460633 NEFMP07197 916 aa9□□□□□ -0.97
HLA-DQA1-205ENST00000460633 NEFLP07196 543 aa8.98□□□□□ -0.97
HLA-DQA1-205ENST00000460633 RANGAP1P46060 587 aaPredicted RBP8.98□□□□□ -0.97
HLA-DQA1-205ENST00000460633 GTF3C3Q9Y5Q9 886 aa8.98□□□□□ -0.97
HLA-DQA1-205ENST00000460633 SOGA1O94964 1423 aa8.97□□□□□ -0.97
HLA-DQA1-205ENST00000460633 CHMP7Q8WUX9 453 aaPredicted RBP8.96□□□□□ -0.97
HLA-DQA1-205ENST00000460633 CDK11AQ9UQ88 783 aaPredicted RBP8.96□□□□□ -0.98
HLA-DQA1-205ENST00000460633 DIEXFQ68CQ4 756 aaKnown RBP8.95□□□□□ -0.98
HLA-DQA1-205ENST00000460633 DNAJC5BQ9UF47 199 aa8.92□□□□□ -0.98
HLA-DQA1-205ENST00000460633 DCAF8L1A6NGE4 600 aa8.92□□□□□ -0.98
HLA-DQA1-205ENST00000460633 STAG3Q9UJ98 1225 aa8.91□□□□□ -0.98
HLA-DQA1-205ENST00000460633 SLC4A1APQ9BWU0 796 aaKnown RBP8.91□□□□□ -0.98
HLA-DQA1-205ENST00000460633 WDR62O43379 1518 aa8.9□□□□□ -0.98
HLA-DQA1-205ENST00000460633 TOPBP1Q92547 1522 aa8.89□□□□□ -0.99
HLA-DQA1-205ENST00000460633 GRIN2BQ13224 1484 aa8.89□□□□□ -0.99
HLA-DQA1-205ENST00000460633 BCL11AQ9H165 835 aa8.88□□□□□ -0.99
HLA-DQA1-205ENST00000460633 ACIN1Q9UKV3 1341 aaKnown RBP8.88□□□□□ -0.99
HLA-DQA1-205ENST00000460633 CSRNP3Q8WYN3 585 aa8.87□□□□□ -0.99
HLA-DQA1-205ENST00000460633 CARMIL2Q6F5E8 1435 aa8.87□□□□□ -0.99
HLA-DQA1-205ENST00000460633 TOP2BQ02880 1626 aa8.86□□□□□ -0.99
HLA-DQA1-205ENST00000460633 GOLGA3Q08378 1498 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms