RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 AEBP2Q6ZN18 517 aaPredicted RBP25.68■■□□□ 1.7
RFX3-211ENST00000458034 CHIC1Q5VXU3 224 aa23.95■■□□□ 1.42
RFX3-211ENST00000458034 NISCHQ9Y2I1 1504 aa23■■□□□ 1.27
RFX3-211ENST00000458034 SENP3Q9H4L4 574 aaPredicted RBP21.95■■□□□ 1.1
RFX3-211ENST00000458034 PHF23Q9BUL5 403 aaPredicted RBP21.61■■□□□ 1.05
RFX3-211ENST00000458034 FOXD1Q16676 465 aa20.55■□□□□ 0.88
RFX3-211ENST00000458034 POTEDQ86YR6 584 aa19.92■□□□□ 0.78
RFX3-211ENST00000458034 CCDC180Q9P1Z9 1646 aa19.84■□□□□ 0.77
RFX3-211ENST00000458034 ZCCHC6Q5VYS8 1495 aaKnown RBP19.47■□□□□ 0.71
RFX3-211ENST00000458034 MSH5O43196 834 aa19.42■□□□□ 0.7
RFX3-211ENST00000458034 SHROOM4Q9ULL8 1493 aa19.21■□□□□ 0.67
RFX3-211ENST00000458034 PIAS4Q8N2W9 510 aaPredicted RBP19.06■□□□□ 0.64
RFX3-211ENST00000458034 DCAF1Q9Y4B6 1507 aa19.05■□□□□ 0.64
RFX3-211ENST00000458034 SUPT5HO00267 1087 aaKnown RBP18.81■□□□□ 0.6
RFX3-211ENST00000458034 PPP6R1Q9UPN7 881 aa18.81■□□□□ 0.6
RFX3-211ENST00000458034 PLPPR3Q6T4P5 718 aa18.77■□□□□ 0.6
RFX3-211ENST00000458034 DCAF8L2P0C7V8 631 aa18.76■□□□□ 0.59
RFX3-211ENST00000458034 ADRA2BP18089 450 aa18.71■□□□□ 0.59
RFX3-211ENST00000458034 MYO15BQ96JP2 1530 aa18.56■□□□□ 0.56
RFX3-211ENST00000458034 ABCC9O60706 1549 aa18.39■□□□□ 0.54
RFX3-211ENST00000458034 SCRIBQ14160 1630 aa18.3■□□□□ 0.52
RFX3-211ENST00000458034 NACADO15069 1562 aa18.29■□□□□ 0.52
RFX3-211ENST00000458034 RSF1Q96T23 1441 aaPredicted RBP18.06■□□□□ 0.48
RFX3-211ENST00000458034 RB1CC1Q8TDY2 1594 aa18.01■□□□□ 0.47
RFX3-211ENST00000458034 MROH2BQ7Z745 1585 aa17.78■□□□□ 0.44
RFX3-211ENST00000458034 CECR2Q9BXF3 1484 aa17.76■□□□□ 0.43
RFX3-211ENST00000458034 BAZ1AQ9NRL2 1556 aaPredicted RBP17.75■□□□□ 0.43
RFX3-211ENST00000458034 WIZO95785 1651 aa17.72■□□□□ 0.43
RFX3-211ENST00000458034 HRCP23327 699 aa17.68■□□□□ 0.42
RFX3-211ENST00000458034 UNC13AQ9UPW8 1703 aa17.67■□□□□ 0.42
RFX3-211ENST00000458034 TRIM41Q8WV44 630 aa17.67■□□□□ 0.42
RFX3-211ENST00000458034 LOC105371045A0A1W2PR82 267 aa17.64■□□□□ 0.41
RFX3-211ENST00000458034 PCGF6Q9BYE7 350 aa17.6■□□□□ 0.41
RFX3-211ENST00000458034 SMARCA4P51532 1647 aa17.58■□□□□ 0.41
RFX3-211ENST00000458034 TOP2AP11388 1531 aaKnown RBP17.57■□□□□ 0.4
RFX3-211ENST00000458034 EIF4G1Q04637 1599 aaKnown RBP17.53■□□□□ 0.4
RFX3-211ENST00000458034 TRIM26Q12899 539 aaPredicted RBP17.48■□□□□ 0.39
RFX3-211ENST00000458034 SMARCA2P51531 1590 aa17.4■□□□□ 0.38
RFX3-211ENST00000458034 MAPK8IP2Q13387 824 aaPredicted RBP17.36■□□□□ 0.37
RFX3-211ENST00000458034 BICRAQ9NZM4 1560 aa17.36■□□□□ 0.37
RFX3-211ENST00000458034 CCDC88BA6NC98 1476 aa17.34■□□□□ 0.37
RFX3-211ENST00000458034 FAM9AQ8IZU1 332 aaPredicted RBP17.34■□□□□ 0.37
RFX3-211ENST00000458034 DMRT2Q9Y5R5 561 aa17.33■□□□□ 0.36
RFX3-211ENST00000458034 PEG3Q9GZU2 1588 aa17.32■□□□□ 0.36
RFX3-211ENST00000458034 ZEB1P37275 1124 aaPredicted RBP17.22■□□□□ 0.35
RFX3-211ENST00000458034 EEA1Q15075 1411 aa17.21■□□□□ 0.34
RFX3-211ENST00000458034 ABCC8Q09428 1581 aa17.2■□□□□ 0.34
RFX3-211ENST00000458034 PABPN1Q86U42 306 aaKnown RBP eCLIP17.12■□□□□ 0.33
RFX3-211ENST00000458034 ATAD2BQ9ULI0 1458 aa17.07■□□□□ 0.32
RFX3-211ENST00000458034 SCAF1Q9H7N4 1312 aaKnown RBP17.07■□□□□ 0.32
RFX3-211ENST00000458034 PPARGC1BQ86YN6 1023 aaKnown RBP17.07■□□□□ 0.32
RFX3-211ENST00000458034 BAZ1BQ9UIG0 1483 aaKnown RBP17.06■□□□□ 0.32
RFX3-211ENST00000458034 EHMT2Q96KQ7 1210 aa17.06■□□□□ 0.32
RFX3-211ENST00000458034 WRNQ14191 1432 aaPredicted RBP eCLIP17.04■□□□□ 0.32
RFX3-211ENST00000458034 TNIKQ9UKE5 1360 aa17.02■□□□□ 0.31
RFX3-211ENST00000458034 CACNB1Q02641 598 aaPredicted RBP17.01■□□□□ 0.31
RFX3-211ENST00000458034 GOLGA3Q08378 1498 aa16.99■□□□□ 0.31
RFX3-211ENST00000458034 SOGA1O94964 1423 aa16.98■□□□□ 0.31
RFX3-211ENST00000458034 CEP162Q5TB80 1403 aa16.97■□□□□ 0.31
RFX3-211ENST00000458034 CSRNP3Q8WYN3 585 aa16.96■□□□□ 0.31
RFX3-211ENST00000458034 KIF21BO75037 1637 aa16.95■□□□□ 0.3
RFX3-211ENST00000458034 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
RFX3-211ENST00000458034 CEP164Q9UPV0 1460 aa16.9■□□□□ 0.3
RFX3-211ENST00000458034 HMGXB3Q12766 1538 aa16.9■□□□□ 0.3
RFX3-211ENST00000458034 RUSC2Q8N2Y8 1516 aa16.87■□□□□ 0.29
RFX3-211ENST00000458034 BIVM-ERCC5R4GMW8 1640 aa16.85■□□□□ 0.29
RFX3-211ENST00000458034 TOP2BQ02880 1626 aa16.84■□□□□ 0.29
RFX3-211ENST00000458034 UBTFP17480 764 aaKnown RBP16.83■□□□□ 0.28
RFX3-211ENST00000458034 NCAPD3P42695 1498 aa16.8■□□□□ 0.28
RFX3-211ENST00000458034 PRDM2Q13029 1718 aa16.76■□□□□ 0.27
RFX3-211ENST00000458034 ERICH3Q5RHP9 1530 aa16.7■□□□□ 0.26
RFX3-211ENST00000458034 CLIP1P30622 1438 aa16.7■□□□□ 0.26
RFX3-211ENST00000458034 CCER1Q8TC90 406 aaPredicted RBP16.69■□□□□ 0.26
RFX3-211ENST00000458034 VPS8Q8N3P4 1428 aa16.65■□□□□ 0.26
RFX3-211ENST00000458034 DCAF8L1A6NGE4 600 aa16.64■□□□□ 0.25
RFX3-211ENST00000458034 RAPGEF2Q9Y4G8 1499 aa16.63■□□□□ 0.25
RFX3-211ENST00000458034 CFTRP13569 1480 aa16.62■□□□□ 0.25
RFX3-211ENST00000458034 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.61■□□□□ 0.25
RFX3-211ENST00000458034 CUX1P39880 1505 aa16.6■□□□□ 0.25
RFX3-211ENST00000458034 PRXQ9BXM0 1461 aa16.57■□□□□ 0.24
RFX3-211ENST00000458034 APLP2Q06481 763 aa16.57■□□□□ 0.24
RFX3-211ENST00000458034 KIF27Q86VH2 1401 aa16.56■□□□□ 0.24
RFX3-211ENST00000458034 RNF39Q9H2S5 420 aa16.54■□□□□ 0.24
RFX3-211ENST00000458034 TTBK1Q5TCY1 1321 aaPredicted RBP16.53■□□□□ 0.24
RFX3-211ENST00000458034 HOXD11P31277 338 aaPredicted RBP16.48■□□□□ 0.23
RFX3-211ENST00000458034 ARAP1Q96P48 1450 aa16.44■□□□□ 0.22
RFX3-211ENST00000458034 CADPSQ9ULU8 1353 aa16.42■□□□□ 0.22
RFX3-211ENST00000458034 CC2D2AQ9P2K1 1620 aa16.4■□□□□ 0.22
RFX3-211ENST00000458034 PPP4R3CPQ6ZMV5 832 aa16.39■□□□□ 0.21
RFX3-211ENST00000458034 CUX2O14529 1486 aa16.35■□□□□ 0.21
RFX3-211ENST00000458034 FGD5Q6ZNL6 1462 aa16.33■□□□□ 0.2
RFX3-211ENST00000458034 HNRNPUL2Q1KMD3 747 aaKnown RBP16.32■□□□□ 0.2
RFX3-211ENST00000458034 RANGAP1P46060 587 aaPredicted RBP16.31■□□□□ 0.2
RFX3-211ENST00000458034 ARHGAP35Q9NRY4 1499 aa16.3■□□□□ 0.2
RFX3-211ENST00000458034 DIEXFQ68CQ4 756 aaKnown RBP16.3■□□□□ 0.2
RFX3-211ENST00000458034 DNMBPQ6XZF7 1577 aa16.3■□□□□ 0.2
RFX3-211ENST00000458034 MAP3K1Q13233 1512 aa16.28■□□□□ 0.2
RFX3-211ENST00000458034 FANCD2Q9BXW9 1451 aa16.28■□□□□ 0.2
RFX3-211ENST00000458034 CLSPNQ9HAW4 1339 aa16.27■□□□□ 0.2
RFX3-211ENST00000458034 ZNF316A6NFI3 1004 aaPredicted RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 270.4 ms