RNA–Protein interactions for RNA: ENST00000441074.3

LTBR-203, Transcript of lymphotoxin beta receptor, humanhuman

TSL 1 (best)

Gene LTBR, Length 2,327 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-203ENST00000441074 NISCHQ9Y2I1 1504 aa24.72■■□□□ 1.55
LTBR-203ENST00000441074 CCDC180Q9P1Z9 1646 aa21.74■■□□□ 1.07
LTBR-203ENST00000441074 ABCC9O60706 1549 aa21.15■□□□□ 0.98
LTBR-203ENST00000441074 DCAF8L2P0C7V8 631 aa20.92■□□□□ 0.94
LTBR-203ENST00000441074 SHROOM4Q9ULL8 1493 aa20.77■□□□□ 0.92
LTBR-203ENST00000441074 ZCCHC6Q5VYS8 1495 aaKnown RBP20.76■□□□□ 0.91
LTBR-203ENST00000441074 NACADO15069 1562 aa20.41■□□□□ 0.86
LTBR-203ENST00000441074 DCAF1Q9Y4B6 1507 aa20.38■□□□□ 0.85
LTBR-203ENST00000441074 RB1CC1Q8TDY2 1594 aa20.37■□□□□ 0.85
LTBR-203ENST00000441074 MYO15BQ96JP2 1530 aa20.34■□□□□ 0.85
LTBR-203ENST00000441074 SUPT5HO00267 1087 aaKnown RBP20.05■□□□□ 0.8
LTBR-203ENST00000441074 HRCP23327 699 aa19.98■□□□□ 0.79
LTBR-203ENST00000441074 SCRIBQ14160 1630 aa19.98■□□□□ 0.79
LTBR-203ENST00000441074 UNC13AQ9UPW8 1703 aa19.92■□□□□ 0.78
LTBR-203ENST00000441074 PABPN1Q86U42 306 aaKnown RBP eCLIP19.87■□□□□ 0.77
LTBR-203ENST00000441074 BICRAQ9NZM4 1560 aa19.76■□□□□ 0.75
LTBR-203ENST00000441074 PCGF6Q9BYE7 350 aa19.5■□□□□ 0.71
LTBR-203ENST00000441074 CHIC1Q5VXU3 224 aa19.47■□□□□ 0.71
LTBR-203ENST00000441074 CECR2Q9BXF3 1484 aa19.42■□□□□ 0.7
LTBR-203ENST00000441074 PPARGC1BQ86YN6 1023 aaKnown RBP19.41■□□□□ 0.7
LTBR-203ENST00000441074 RSF1Q96T23 1441 aaPredicted RBP19.36■□□□□ 0.69
LTBR-203ENST00000441074 PELP1Q8IZL8 1130 aaKnown RBP19.28■□□□□ 0.68
LTBR-203ENST00000441074 MROH2BQ7Z745 1585 aa19.24■□□□□ 0.67
LTBR-203ENST00000441074 EIF4G1Q04637 1599 aaKnown RBP19.23■□□□□ 0.67
LTBR-203ENST00000441074 DNAJC5BQ9UF47 199 aa19.19■□□□□ 0.66
LTBR-203ENST00000441074 BAZ1AQ9NRL2 1556 aaPredicted RBP19.11■□□□□ 0.65
LTBR-203ENST00000441074 SMARCA4P51532 1647 aa19.09■□□□□ 0.65
LTBR-203ENST00000441074 CC2D2AQ9P2K1 1620 aa19.09■□□□□ 0.65
LTBR-203ENST00000441074 WIZO95785 1651 aa19.06■□□□□ 0.64
LTBR-203ENST00000441074 TRIM26Q12899 539 aaPredicted RBP19.02■□□□□ 0.64
LTBR-203ENST00000441074 ATAD2BQ9ULI0 1458 aa18.94■□□□□ 0.62
LTBR-203ENST00000441074 ZEB1P37275 1124 aaPredicted RBP18.91■□□□□ 0.62
LTBR-203ENST00000441074 LOC105371045A0A1W2PR82 267 aa18.91■□□□□ 0.62
LTBR-203ENST00000441074 SMARCA2P51531 1590 aa18.89■□□□□ 0.61
LTBR-203ENST00000441074 NCAPD3P42695 1498 aa18.86■□□□□ 0.61
LTBR-203ENST00000441074 PEG3Q9GZU2 1588 aa18.85■□□□□ 0.61
LTBR-203ENST00000441074 BAZ1BQ9UIG0 1483 aaKnown RBP18.8■□□□□ 0.6
LTBR-203ENST00000441074 SCAF1Q9H7N4 1312 aaKnown RBP18.8■□□□□ 0.6
LTBR-203ENST00000441074 HMGXB3Q12766 1538 aa18.76■□□□□ 0.59
LTBR-203ENST00000441074 TOP2AP11388 1531 aaKnown RBP18.71■□□□□ 0.59
LTBR-203ENST00000441074 CCDC88BA6NC98 1476 aa18.7■□□□□ 0.58
LTBR-203ENST00000441074 TRIM41Q8WV44 630 aa18.67■□□□□ 0.58
LTBR-203ENST00000441074 FAM9AQ8IZU1 332 aaPredicted RBP18.58■□□□□ 0.56
LTBR-203ENST00000441074 MYT1Q01538 1121 aa18.56■□□□□ 0.56
LTBR-203ENST00000441074 EHMT2Q96KQ7 1210 aa18.51■□□□□ 0.55
LTBR-203ENST00000441074 ABCC8Q09428 1581 aa18.44■□□□□ 0.54
LTBR-203ENST00000441074 ACIN1Q9UKV3 1341 aaKnown RBP18.42■□□□□ 0.54
LTBR-203ENST00000441074 NESP48681 1621 aa18.39■□□□□ 0.53
LTBR-203ENST00000441074 CADPSQ9ULU8 1353 aa18.36■□□□□ 0.53
LTBR-203ENST00000441074 NEUROD1Q13562 356 aa18.31■□□□□ 0.52
LTBR-203ENST00000441074 CFTRP13569 1480 aa18.29■□□□□ 0.52
LTBR-203ENST00000441074 LAMC3Q9Y6N6 1575 aa18.29■□□□□ 0.52
LTBR-203ENST00000441074 CENPBP07199 599 aaPredicted RBP18.22■□□□□ 0.51
LTBR-203ENST00000441074 PDS5BQ9NTI5 1447 aa18.2■□□□□ 0.5
LTBR-203ENST00000441074 GTF3C3Q9Y5Q9 886 aa18.2■□□□□ 0.5
LTBR-203ENST00000441074 WRNQ14191 1432 aaPredicted RBP eCLIP18.19■□□□□ 0.5
LTBR-203ENST00000441074 ERCC6Q03468 1493 aa18.18■□□□□ 0.5
LTBR-203ENST00000441074 SOGA1O94964 1423 aa18.18■□□□□ 0.5
LTBR-203ENST00000441074 AEBP2Q6ZN18 517 aaPredicted RBP18.16■□□□□ 0.5
LTBR-203ENST00000441074 FANCD2Q9BXW9 1451 aa18.15■□□□□ 0.5
LTBR-203ENST00000441074 RUSC2Q8N2Y8 1516 aa18.13■□□□□ 0.49
LTBR-203ENST00000441074 KIF21AQ7Z4S6 1674 aa18.12■□□□□ 0.49
LTBR-203ENST00000441074 DIEXFQ68CQ4 756 aaKnown RBP18.11■□□□□ 0.49
LTBR-203ENST00000441074 SYNJ1O43426 1573 aa18.1■□□□□ 0.49
LTBR-203ENST00000441074 PRDM2Q13029 1718 aa18.1■□□□□ 0.49
LTBR-203ENST00000441074 CCER1Q8TC90 406 aaPredicted RBP18.1■□□□□ 0.49
LTBR-203ENST00000441074 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.09■□□□□ 0.49
LTBR-203ENST00000441074 CEP164Q9UPV0 1460 aa18.08■□□□□ 0.49
LTBR-203ENST00000441074 CSRNP3Q8WYN3 585 aa17.99■□□□□ 0.47
LTBR-203ENST00000441074 MRC2Q9UBG0 1479 aa17.98■□□□□ 0.47
LTBR-203ENST00000441074 THOC2Q8NI27 1593 aaKnown RBP17.95■□□□□ 0.46
LTBR-203ENST00000441074 URB2Q14146 1524 aaKnown RBP17.95■□□□□ 0.46
LTBR-203ENST00000441074 CUX1P39880 1505 aa17.93■□□□□ 0.46
LTBR-203ENST00000441074 UBTFP17480 764 aaKnown RBP17.9■□□□□ 0.46
LTBR-203ENST00000441074 EEA1Q15075 1411 aa17.9■□□□□ 0.46
LTBR-203ENST00000441074 WDR62O43379 1518 aa17.89■□□□□ 0.45
LTBR-203ENST00000441074 TOP2BQ02880 1626 aa17.88■□□□□ 0.45
LTBR-203ENST00000441074 TOPBP1Q92547 1522 aa17.88■□□□□ 0.45
LTBR-203ENST00000441074 DNMBPQ6XZF7 1577 aa17.86■□□□□ 0.45
LTBR-203ENST00000441074 RANGAP1P46060 587 aaPredicted RBP17.84■□□□□ 0.45
LTBR-203ENST00000441074 TNIKQ9UKE5 1360 aa17.83■□□□□ 0.44
LTBR-203ENST00000441074 ZNF316A6NFI3 1004 aaPredicted RBP17.83■□□□□ 0.44
LTBR-203ENST00000441074 CEP162Q5TB80 1403 aa17.83■□□□□ 0.44
LTBR-203ENST00000441074 CUX2O14529 1486 aa17.8■□□□□ 0.44
LTBR-203ENST00000441074 BIVM-ERCC5R4GMW8 1640 aa17.78■□□□□ 0.44
LTBR-203ENST00000441074 POLA1P09884 1462 aaPredicted RBP17.76■□□□□ 0.43
LTBR-203ENST00000441074 FGD5Q6ZNL6 1462 aa17.76■□□□□ 0.43
LTBR-203ENST00000441074 RAPGEF2Q9Y4G8 1499 aa17.73■□□□□ 0.43
LTBR-203ENST00000441074 RAD54L2Q9Y4B4 1467 aa17.72■□□□□ 0.43
LTBR-203ENST00000441074 GOLGA3Q08378 1498 aa17.71■□□□□ 0.43
LTBR-203ENST00000441074 TTBK1Q5TCY1 1321 aaPredicted RBP17.7■□□□□ 0.42
LTBR-203ENST00000441074 YTHDC1Q96MU7 727 aaKnown RBP17.68■□□□□ 0.42
LTBR-203ENST00000441074 IFT140Q96RY7 1462 aa17.67■□□□□ 0.42
LTBR-203ENST00000441074 KIF27Q86VH2 1401 aa17.67■□□□□ 0.42
LTBR-203ENST00000441074 TARBP1Q13395 1621 aaKnown RBP17.64■□□□□ 0.41
LTBR-203ENST00000441074 MIER1Q8N108 512 aa17.64■□□□□ 0.41
LTBR-203ENST00000441074 ZNF608Q9ULD9 1512 aaPredicted RBP17.63■□□□□ 0.41
LTBR-203ENST00000441074 TDRD9Q8NDG6 1382 aaKnown RBP17.62■□□□□ 0.41
LTBR-203ENST00000441074 KIF21BO75037 1637 aa17.62■□□□□ 0.41
LTBR-203ENST00000441074 IGF1RP08069 1367 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms