RNA–Protein interactions for RNA: ENST00000439790.5

LINC00460-202, long intergenic non-protein coding RNA 460, humanhuman

TSL 1 (best)

Gene LINC00460, Length 497 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00460-202ENST00000439790 AEBP2Q6ZN18 517 aaPredicted RBP19.06■□□□□ 0.64
LINC00460-202ENST00000439790 CHIC1Q5VXU3 224 aa17.9■□□□□ 0.46
LINC00460-202ENST00000439790 SENP3Q9H4L4 574 aaPredicted RBP16.4■□□□□ 0.22
LINC00460-202ENST00000439790 PHF23Q9BUL5 403 aaPredicted RBP16.11■□□□□ 0.17
LINC00460-202ENST00000439790 FOXD1Q16676 465 aa15.28■□□□□ 0.04
LINC00460-202ENST00000439790 POTEDQ86YR6 584 aa14.71□□□□□ -0.05
LINC00460-202ENST00000439790 MSH5O43196 834 aa14.51□□□□□ -0.09
LINC00460-202ENST00000439790 NISCHQ9Y2I1 1504 aa14.48□□□□□ -0.09
LINC00460-202ENST00000439790 PLPPR3Q6T4P5 718 aa14.27□□□□□ -0.13
LINC00460-202ENST00000439790 PIAS4Q8N2W9 510 aaPredicted RBP14.18□□□□□ -0.14
LINC00460-202ENST00000439790 ABCC9O60706 1549 aa14.09□□□□□ -0.15
LINC00460-202ENST00000439790 DNAJC5BQ9UF47 199 aa13.99□□□□□ -0.17
LINC00460-202ENST00000439790 PPP6R1Q9UPN7 881 aa13.98□□□□□ -0.17
LINC00460-202ENST00000439790 ADRA2BP18089 450 aa13.9□□□□□ -0.18
LINC00460-202ENST00000439790 DNAJC5Q9H3Z4 198 aa13.24□□□□□ -0.29
LINC00460-202ENST00000439790 CCDC180Q9P1Z9 1646 aa13.18□□□□□ -0.3
LINC00460-202ENST00000439790 PABPN1Q86U42 306 aaKnown RBP eCLIP13.04□□□□□ -0.32
LINC00460-202ENST00000439790 DMRT2Q9Y5R5 561 aa12.94□□□□□ -0.34
LINC00460-202ENST00000439790 RB1CC1Q8TDY2 1594 aa12.94□□□□□ -0.34
LINC00460-202ENST00000439790 MAPK8IP2Q13387 824 aaPredicted RBP12.88□□□□□ -0.35
LINC00460-202ENST00000439790 SCAF1Q9H7N4 1312 aaKnown RBP12.86□□□□□ -0.35
LINC00460-202ENST00000439790 BICRAQ9NZM4 1560 aa12.73□□□□□ -0.37
LINC00460-202ENST00000439790 CECR2Q9BXF3 1484 aa12.72□□□□□ -0.37
LINC00460-202ENST00000439790 NACADO15069 1562 aa12.68□□□□□ -0.38
LINC00460-202ENST00000439790 UNC13AQ9UPW8 1703 aa12.65□□□□□ -0.38
LINC00460-202ENST00000439790 CC2D2AQ9P2K1 1620 aa12.62□□□□□ -0.39
LINC00460-202ENST00000439790 CACNB1Q02641 598 aaPredicted RBP12.62□□□□□ -0.39
LINC00460-202ENST00000439790 DCAF8L2P0C7V8 631 aa12.54□□□□□ -0.4
LINC00460-202ENST00000439790 PPP4R3CPQ6ZMV5 832 aa12.5□□□□□ -0.41
LINC00460-202ENST00000439790 EIF4G1Q04637 1599 aaKnown RBP12.43□□□□□ -0.42
LINC00460-202ENST00000439790 TRIM41Q8WV44 630 aa12.38□□□□□ -0.43
LINC00460-202ENST00000439790 DCAF8L1A6NGE4 600 aa12.35□□□□□ -0.43
LINC00460-202ENST00000439790 HOXD11P31277 338 aaPredicted RBP12.34□□□□□ -0.43
LINC00460-202ENST00000439790 CUX2O14529 1486 aa12.34□□□□□ -0.43
LINC00460-202ENST00000439790 RNF39Q9H2S5 420 aa12.32□□□□□ -0.44
LINC00460-202ENST00000439790 SHROOM4Q9ULL8 1493 aa12.31□□□□□ -0.44
LINC00460-202ENST00000439790 CNKSR2Q8WXI2 1034 aa12.27□□□□□ -0.45
LINC00460-202ENST00000439790 MYO15BQ96JP2 1530 aa12.26□□□□□ -0.45
LINC00460-202ENST00000439790 RNF216Q9NWF9 866 aaPredicted RBP12.17□□□□□ -0.46
LINC00460-202ENST00000439790 C1QBPQ07021 282 aaKnown RBP12.16□□□□□ -0.46
LINC00460-202ENST00000439790 ERCC6Q03468 1493 aa12.13□□□□□ -0.47
LINC00460-202ENST00000439790 SCRIBQ14160 1630 aa12.1□□□□□ -0.47
LINC00460-202ENST00000439790 NCBP3Q53F19 620 aaKnown RBP12.02□□□□□ -0.49
LINC00460-202ENST00000439790 PELP1Q8IZL8 1130 aaKnown RBP12□□□□□ -0.49
LINC00460-202ENST00000439790 NESP48681 1621 aa11.93□□□□□ -0.5
LINC00460-202ENST00000439790 NPM3O75607 178 aaKnown RBP11.88□□□□□ -0.51
LINC00460-202ENST00000439790 THOC2Q8NI27 1593 aaKnown RBP11.88□□□□□ -0.51
LINC00460-202ENST00000439790 ZCCHC6Q5VYS8 1495 aaKnown RBP11.87□□□□□ -0.51
LINC00460-202ENST00000439790 DCAF1Q9Y4B6 1507 aa11.85□□□□□ -0.51
LINC00460-202ENST00000439790 MYT1Q01538 1121 aa11.8□□□□□ -0.52
LINC00460-202ENST00000439790 NCAPD3P42695 1498 aa11.78□□□□□ -0.52
LINC00460-202ENST00000439790 SMARCA2P51531 1590 aa11.75□□□□□ -0.53
LINC00460-202ENST00000439790 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.72□□□□□ -0.53
LINC00460-202ENST00000439790 KCNA4P22459 653 aa11.69□□□□□ -0.54
LINC00460-202ENST00000439790 ATAD2BQ9ULI0 1458 aa11.68□□□□□ -0.54
LINC00460-202ENST00000439790 BAZ1AQ9NRL2 1556 aaPredicted RBP11.67□□□□□ -0.54
LINC00460-202ENST00000439790 OSCARQ8IYS5 282 aa11.65□□□□□ -0.54
LINC00460-202ENST00000439790 HRCP23327 699 aa11.64□□□□□ -0.55
LINC00460-202ENST00000439790 KIF21AQ7Z4S6 1674 aa11.62□□□□□ -0.55
LINC00460-202ENST00000439790 RIMBP3CA6NJZ7 1639 aa11.62□□□□□ -0.55
LINC00460-202ENST00000439790 RIMBP3BA6NNM3 1639 aa11.62□□□□□ -0.55
LINC00460-202ENST00000439790 RIMBP3Q9UFD9 1639 aa11.62□□□□□ -0.55
LINC00460-202ENST00000439790 HMGXB3Q12766 1538 aa11.59□□□□□ -0.55
LINC00460-202ENST00000439790 TRHP20396 242 aaPredicted RBP11.56□□□□□ -0.56
LINC00460-202ENST00000439790 LAMC3Q9Y6N6 1575 aa11.56□□□□□ -0.56
LINC00460-202ENST00000439790 WDR62O43379 1518 aa11.54□□□□□ -0.56
LINC00460-202ENST00000439790 PDS5BQ9NTI5 1447 aa11.53□□□□□ -0.56
LINC00460-202ENST00000439790 MRC2Q9UBG0 1479 aa11.53□□□□□ -0.56
LINC00460-202ENST00000439790 ARHGEF11O15085 1522 aa11.53□□□□□ -0.56
LINC00460-202ENST00000439790 CYB5RLQ6IPT4 315 aa11.5□□□□□ -0.57
LINC00460-202ENST00000439790 ILDR1Q86SU0 546 aaPredicted RBP11.49□□□□□ -0.57
LINC00460-202ENST00000439790 BAZ1BQ9UIG0 1483 aaKnown RBP11.47□□□□□ -0.57
LINC00460-202ENST00000439790 POTEHQ6S545 545 aa11.47□□□□□ -0.57
LINC00460-202ENST00000439790 SMARCA4P51532 1647 aa11.42□□□□□ -0.58
LINC00460-202ENST00000439790 U3KPZ7 1027 aaPredicted RBP11.42□□□□□ -0.58
LINC00460-202ENST00000439790 ARAP1Q96P48 1450 aa11.42□□□□□ -0.58
LINC00460-202ENST00000439790 DSG3P32926 999 aa11.4□□□□□ -0.58
LINC00460-202ENST00000439790 CADPSQ9ULU8 1353 aa11.39□□□□□ -0.59
LINC00460-202ENST00000439790 SLC4A2P04920 1241 aa11.36□□□□□ -0.59
LINC00460-202ENST00000439790 CAPN15O75808 1086 aa11.34□□□□□ -0.59
LINC00460-202ENST00000439790 SPINK5Q9NQ38 1064 aaPredicted RBP11.32□□□□□ -0.6
LINC00460-202ENST00000439790 CEP164Q9UPV0 1460 aa11.32□□□□□ -0.6
LINC00460-202ENST00000439790 ZEB1P37275 1124 aaPredicted RBP11.31□□□□□ -0.6
LINC00460-202ENST00000439790 PEG3Q9GZU2 1588 aa11.31□□□□□ -0.6
LINC00460-202ENST00000439790 ZNF608Q9ULD9 1512 aaPredicted RBP11.29□□□□□ -0.6
LINC00460-202ENST00000439790 URB2Q14146 1524 aaKnown RBP11.28□□□□□ -0.6
LINC00460-202ENST00000439790 FANCD2Q9BXW9 1451 aa11.27□□□□□ -0.6
LINC00460-202ENST00000439790 TTBK1Q5TCY1 1321 aaPredicted RBP11.21□□□□□ -0.61
LINC00460-202ENST00000439790 MROH2BQ7Z745 1585 aa11.2□□□□□ -0.62
LINC00460-202ENST00000439790 APLP2Q06481 763 aa11.17□□□□□ -0.62
LINC00460-202ENST00000439790 RSF1Q96T23 1441 aaPredicted RBP11.17□□□□□ -0.62
LINC00460-202ENST00000439790 CFTRP13569 1480 aa11.12□□□□□ -0.63
LINC00460-202ENST00000439790 IFT140Q96RY7 1462 aa11.12□□□□□ -0.63
LINC00460-202ENST00000439790 ZNF219Q9P2Y4 722 aaPredicted RBP11.11□□□□□ -0.63
LINC00460-202ENST00000439790 CHD1O14646 1710 aa11.1□□□□□ -0.63
LINC00460-202ENST00000439790 KDM4FA0A1W2PPD8 638 aa11.1□□□□□ -0.63
LINC00460-202ENST00000439790 EIF4G3O43432 1585 aaKnown RBP11.1□□□□□ -0.63
LINC00460-202ENST00000439790 PCGF6Q9BYE7 350 aa11.09□□□□□ -0.63
LINC00460-202ENST00000439790 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.08□□□□□ -0.64
LINC00460-202ENST00000439790 HNRNPUL2Q1KMD3 747 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms