RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 POTEDQ86YR6 584 aa15.99■□□□□ 0.15
COL28A1-202ENST00000430711 AEBP2Q6ZN18 517 aaPredicted RBP15.26■□□□□ 0.03
COL28A1-202ENST00000430711 CHIC1Q5VXU3 224 aa14.87□□□□□ -0.03
COL28A1-202ENST00000430711 NISCHQ9Y2I1 1504 aa14.75□□□□□ -0.05
COL28A1-202ENST00000430711 PHF23Q9BUL5 403 aaPredicted RBP13.25□□□□□ -0.29
COL28A1-202ENST00000430711 SENP3Q9H4L4 574 aaPredicted RBP13.13□□□□□ -0.31
COL28A1-202ENST00000430711 ABCC9O60706 1549 aa12.93□□□□□ -0.34
COL28A1-202ENST00000430711 SHROOM4Q9ULL8 1493 aa12.91□□□□□ -0.34
COL28A1-202ENST00000430711 DNAJC5BQ9UF47 199 aa12.79□□□□□ -0.36
COL28A1-202ENST00000430711 MSH5O43196 834 aa12.77□□□□□ -0.37
COL28A1-202ENST00000430711 SUPT5HO00267 1087 aaKnown RBP12.61□□□□□ -0.39
COL28A1-202ENST00000430711 ZCCHC6Q5VYS8 1495 aaKnown RBP12.5□□□□□ -0.41
COL28A1-202ENST00000430711 MYO15BQ96JP2 1530 aa12.42□□□□□ -0.42
COL28A1-202ENST00000430711 CCDC180Q9P1Z9 1646 aa12.4□□□□□ -0.42
COL28A1-202ENST00000430711 DNAJC5Q9H3Z4 198 aa12.4□□□□□ -0.42
COL28A1-202ENST00000430711 DCAF8L2P0C7V8 631 aa12.34□□□□□ -0.43
COL28A1-202ENST00000430711 POTEHQ6S545 545 aa12.15□□□□□ -0.46
COL28A1-202ENST00000430711 CACNB1Q02641 598 aaPredicted RBP12.14□□□□□ -0.47
COL28A1-202ENST00000430711 RB1CC1Q8TDY2 1594 aa12.11□□□□□ -0.47
COL28A1-202ENST00000430711 FOXD1Q16676 465 aa12.1□□□□□ -0.47
COL28A1-202ENST00000430711 PLPPR3Q6T4P5 718 aa12.09□□□□□ -0.47
COL28A1-202ENST00000430711 LOC105371045A0A1W2PR82 267 aa12.03□□□□□ -0.48
COL28A1-202ENST00000430711 PCGF6Q9BYE7 350 aa12.02□□□□□ -0.49
COL28A1-202ENST00000430711 PPARGC1BQ86YN6 1023 aaKnown RBP12□□□□□ -0.49
COL28A1-202ENST00000430711 HRCP23327 699 aa12□□□□□ -0.49
COL28A1-202ENST00000430711 DCAF1Q9Y4B6 1507 aa11.94□□□□□ -0.5
COL28A1-202ENST00000430711 NACADO15069 1562 aa11.86□□□□□ -0.51
COL28A1-202ENST00000430711 SCRIBQ14160 1630 aa11.86□□□□□ -0.51
COL28A1-202ENST00000430711 UNC13AQ9UPW8 1703 aa11.84□□□□□ -0.51
COL28A1-202ENST00000430711 PABPN1Q86U42 306 aaKnown RBP eCLIP11.83□□□□□ -0.52
COL28A1-202ENST00000430711 CECR2Q9BXF3 1484 aa11.79□□□□□ -0.52
COL28A1-202ENST00000430711 BICRAQ9NZM4 1560 aa11.78□□□□□ -0.52
COL28A1-202ENST00000430711 RSF1Q96T23 1441 aaPredicted RBP11.77□□□□□ -0.53
COL28A1-202ENST00000430711 EHMT2Q96KQ7 1210 aa11.74□□□□□ -0.53
COL28A1-202ENST00000430711 CC2D2AQ9P2K1 1620 aa11.73□□□□□ -0.53
COL28A1-202ENST00000430711 FAM9AQ8IZU1 332 aaPredicted RBP11.71□□□□□ -0.54
COL28A1-202ENST00000430711 PPP6R1Q9UPN7 881 aa11.71□□□□□ -0.54
COL28A1-202ENST00000430711 ADRA2BP18089 450 aa11.66□□□□□ -0.54
COL28A1-202ENST00000430711 CUX2O14529 1486 aa11.63□□□□□ -0.55
COL28A1-202ENST00000430711 TRIM41Q8WV44 630 aa11.6□□□□□ -0.55
COL28A1-202ENST00000430711 TRIM26Q12899 539 aaPredicted RBP11.59□□□□□ -0.55
COL28A1-202ENST00000430711 MROH2BQ7Z745 1585 aa11.59□□□□□ -0.55
COL28A1-202ENST00000430711 WIZO95785 1651 aa11.56□□□□□ -0.56
COL28A1-202ENST00000430711 EIF4G1Q04637 1599 aaKnown RBP11.53□□□□□ -0.56
COL28A1-202ENST00000430711 ABCC8Q09428 1581 aa11.38□□□□□ -0.59
COL28A1-202ENST00000430711 TTBK1Q5TCY1 1321 aaPredicted RBP11.36□□□□□ -0.59
COL28A1-202ENST00000430711 BAZ1AQ9NRL2 1556 aaPredicted RBP11.36□□□□□ -0.59
COL28A1-202ENST00000430711 CCDC88BA6NC98 1476 aa11.32□□□□□ -0.6
COL28A1-202ENST00000430711 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.31□□□□□ -0.6
COL28A1-202ENST00000430711 RUSC2Q8N2Y8 1516 aa11.27□□□□□ -0.61
COL28A1-202ENST00000430711 SOGA1O94964 1423 aa11.25□□□□□ -0.61
COL28A1-202ENST00000430711 SCAF1Q9H7N4 1312 aaKnown RBP11.25□□□□□ -0.61
COL28A1-202ENST00000430711 SMARCA2P51531 1590 aa11.24□□□□□ -0.61
COL28A1-202ENST00000430711 ERCC6Q03468 1493 aa11.24□□□□□ -0.61
COL28A1-202ENST00000430711 PIAS4Q8N2W9 510 aaPredicted RBP11.24□□□□□ -0.61
COL28A1-202ENST00000430711 SMARCA4P51532 1647 aa11.24□□□□□ -0.61
COL28A1-202ENST00000430711 TOP2AP11388 1531 aaKnown RBP11.22□□□□□ -0.61
COL28A1-202ENST00000430711 ZEB1P37275 1124 aaPredicted RBP11.2□□□□□ -0.62
COL28A1-202ENST00000430711 CEP162Q5TB80 1403 aa11.16□□□□□ -0.62
COL28A1-202ENST00000430711 CCER1Q8TC90 406 aaPredicted RBP11.14□□□□□ -0.63
COL28A1-202ENST00000430711 THOC2Q8NI27 1593 aaKnown RBP11.07□□□□□ -0.64
COL28A1-202ENST00000430711 WRNQ14191 1432 aaPredicted RBP eCLIP11.06□□□□□ -0.64
COL28A1-202ENST00000430711 SYNJ1O43426 1573 aa11.06□□□□□ -0.64
COL28A1-202ENST00000430711 NEUROD1Q13562 356 aa11.06□□□□□ -0.64
COL28A1-202ENST00000430711 UBTFP17480 764 aaKnown RBP11.04□□□□□ -0.64
COL28A1-202ENST00000430711 CSRNP3Q8WYN3 585 aa11.04□□□□□ -0.64
COL28A1-202ENST00000430711 TNIKQ9UKE5 1360 aa11.03□□□□□ -0.64
COL28A1-202ENST00000430711 RANGAP1P46060 587 aaPredicted RBP11.01□□□□□ -0.65
COL28A1-202ENST00000430711 DIEXFQ68CQ4 756 aaKnown RBP10.98□□□□□ -0.65
COL28A1-202ENST00000430711 GOLGA3Q08378 1498 aa10.96□□□□□ -0.65
COL28A1-202ENST00000430711 HNRNPUL2Q1KMD3 747 aaKnown RBP10.96□□□□□ -0.65
COL28A1-202ENST00000430711 ACIN1Q9UKV3 1341 aaKnown RBP10.96□□□□□ -0.65
COL28A1-202ENST00000430711 RAPGEF2Q9Y4G8 1499 aa10.94□□□□□ -0.66
COL28A1-202ENST00000430711 NCAPD3P42695 1498 aa10.93□□□□□ -0.66
COL28A1-202ENST00000430711 PEG3Q9GZU2 1588 aa10.93□□□□□ -0.66
COL28A1-202ENST00000430711 ATAD2BQ9ULI0 1458 aa10.91□□□□□ -0.66
COL28A1-202ENST00000430711 PLSCR2Q9NRY7 297 aa10.91□□□□□ -0.66
COL28A1-202ENST00000430711 GTF3C3Q9Y5Q9 886 aa10.91□□□□□ -0.66
COL28A1-202ENST00000430711 EEA1Q15075 1411 aa10.89□□□□□ -0.67
COL28A1-202ENST00000430711 NESP48681 1621 aa10.89□□□□□ -0.67
COL28A1-202ENST00000430711 CLIP1P30622 1438 aa10.89□□□□□ -0.67
COL28A1-202ENST00000430711 KIF21BO75037 1637 aa10.89□□□□□ -0.67
COL28A1-202ENST00000430711 YTHDC1Q96MU7 727 aaKnown RBP10.88□□□□□ -0.67
COL28A1-202ENST00000430711 CEP164Q9UPV0 1460 aa10.87□□□□□ -0.67
COL28A1-202ENST00000430711 BAZ1BQ9UIG0 1483 aaKnown RBP10.86□□□□□ -0.67
COL28A1-202ENST00000430711 RIMBP3CA6NJZ7 1639 aa10.85□□□□□ -0.67
COL28A1-202ENST00000430711 RIMBP3BA6NNM3 1639 aa10.85□□□□□ -0.67
COL28A1-202ENST00000430711 RIMBP3Q9UFD9 1639 aa10.85□□□□□ -0.67
COL28A1-202ENST00000430711 MIER1Q8N108 512 aa10.84□□□□□ -0.67
COL28A1-202ENST00000430711 VPS8Q8N3P4 1428 aa10.83□□□□□ -0.68
COL28A1-202ENST00000430711 ZNF316A6NFI3 1004 aaPredicted RBP10.83□□□□□ -0.68
COL28A1-202ENST00000430711 LAMC3Q9Y6N6 1575 aa10.83□□□□□ -0.68
COL28A1-202ENST00000430711 HMGXB3Q12766 1538 aa10.82□□□□□ -0.68
COL28A1-202ENST00000430711 KCNA4P22459 653 aa10.81□□□□□ -0.68
COL28A1-202ENST00000430711 OSCARQ8IYS5 282 aa10.81□□□□□ -0.68
COL28A1-202ENST00000430711 KIF21AQ7Z4S6 1674 aa10.81□□□□□ -0.68
COL28A1-202ENST00000430711 KANK4Q5T7N3 995 aaPredicted RBP10.8□□□□□ -0.68
COL28A1-202ENST00000430711 TOP2BQ02880 1626 aa10.8□□□□□ -0.68
COL28A1-202ENST00000430711 ARAP1Q96P48 1450 aa10.78□□□□□ -0.68
COL28A1-202ENST00000430711 CUX1P39880 1505 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms