RNA–Protein interactions for RNA: ENST00000427538.5

VSIG4-203, Transcript of V-set and immunoglobulin domain containing 4, humanhuman

TSL 3

Gene VSIG4, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSIG4-203ENST00000427538 AEBP2Q6ZN18 517 aaPredicted RBP24.86■■□□□ 1.57
VSIG4-203ENST00000427538 CHIC1Q5VXU3 224 aa23.87■■□□□ 1.41
VSIG4-203ENST00000427538 SENP3Q9H4L4 574 aaPredicted RBP21.22■□□□□ 0.99
VSIG4-203ENST00000427538 PHF23Q9BUL5 403 aaPredicted RBP20.96■□□□□ 0.95
VSIG4-203ENST00000427538 NISCHQ9Y2I1 1504 aa20.82■□□□□ 0.92
VSIG4-203ENST00000427538 FOXD1Q16676 465 aa19.72■□□□□ 0.75
VSIG4-203ENST00000427538 PLPPR3Q6T4P5 718 aa19.2■□□□□ 0.66
VSIG4-203ENST00000427538 PPP6R1Q9UPN7 881 aa18.6■□□□□ 0.57
VSIG4-203ENST00000427538 ADRA2BP18089 450 aa18.57■□□□□ 0.56
VSIG4-203ENST00000427538 PIAS4Q8N2W9 510 aaPredicted RBP18.49■□□□□ 0.55
VSIG4-203ENST00000427538 MSH5O43196 834 aa18.4■□□□□ 0.54
VSIG4-203ENST00000427538 CCDC180Q9P1Z9 1646 aa18.39■□□□□ 0.53
VSIG4-203ENST00000427538 ABCC9O60706 1549 aa18.03■□□□□ 0.48
VSIG4-203ENST00000427538 DCAF8L2P0C7V8 631 aa17.63■□□□□ 0.41
VSIG4-203ENST00000427538 POTEDQ86YR6 584 aa17.52■□□□□ 0.4
VSIG4-203ENST00000427538 RB1CC1Q8TDY2 1594 aa17.36■□□□□ 0.37
VSIG4-203ENST00000427538 NACADO15069 1562 aa17.34■□□□□ 0.37
VSIG4-203ENST00000427538 ZCCHC6Q5VYS8 1495 aaKnown RBP17.34■□□□□ 0.37
VSIG4-203ENST00000427538 MYO15BQ96JP2 1530 aa17.21■□□□□ 0.35
VSIG4-203ENST00000427538 DCAF1Q9Y4B6 1507 aa17.19■□□□□ 0.34
VSIG4-203ENST00000427538 SCAF1Q9H7N4 1312 aaKnown RBP17.04■□□□□ 0.32
VSIG4-203ENST00000427538 MAPK8IP2Q13387 824 aaPredicted RBP16.98■□□□□ 0.31
VSIG4-203ENST00000427538 PABPN1Q86U42 306 aaKnown RBP eCLIP16.93■□□□□ 0.3
VSIG4-203ENST00000427538 SCRIBQ14160 1630 aa16.88■□□□□ 0.29
VSIG4-203ENST00000427538 DMRT2Q9Y5R5 561 aa16.86■□□□□ 0.29
VSIG4-203ENST00000427538 PPP4R3CPQ6ZMV5 832 aa16.84■□□□□ 0.29
VSIG4-203ENST00000427538 UNC13AQ9UPW8 1703 aa16.81■□□□□ 0.28
VSIG4-203ENST00000427538 BICRAQ9NZM4 1560 aa16.7■□□□□ 0.26
VSIG4-203ENST00000427538 SHROOM4Q9ULL8 1493 aa16.67■□□□□ 0.26
VSIG4-203ENST00000427538 CNKSR2Q8WXI2 1034 aa16.49■□□□□ 0.23
VSIG4-203ENST00000427538 DNAJC5BQ9UF47 199 aa16.39■□□□□ 0.21
VSIG4-203ENST00000427538 EIF4G1Q04637 1599 aaKnown RBP16.34■□□□□ 0.21
VSIG4-203ENST00000427538 HOXD11P31277 338 aaPredicted RBP16.33■□□□□ 0.2
VSIG4-203ENST00000427538 NCBP3Q53F19 620 aaKnown RBP16.3■□□□□ 0.2
VSIG4-203ENST00000427538 RNF216Q9NWF9 866 aaPredicted RBP16.28■□□□□ 0.2
VSIG4-203ENST00000427538 CC2D2AQ9P2K1 1620 aa16.24■□□□□ 0.19
VSIG4-203ENST00000427538 CECR2Q9BXF3 1484 aa16.21■□□□□ 0.19
VSIG4-203ENST00000427538 BAZ1AQ9NRL2 1556 aaPredicted RBP16.17■□□□□ 0.18
VSIG4-203ENST00000427538 DCAF8L1A6NGE4 600 aa16.13■□□□□ 0.17
VSIG4-203ENST00000427538 SMARCA4P51532 1647 aa16.11■□□□□ 0.17
VSIG4-203ENST00000427538 SMARCA2P51531 1590 aa16.04■□□□□ 0.16
VSIG4-203ENST00000427538 MROH2BQ7Z745 1585 aa16.04■□□□□ 0.16
VSIG4-203ENST00000427538 ATAD2BQ9ULI0 1458 aa16.03■□□□□ 0.16
VSIG4-203ENST00000427538 NPM3O75607 178 aaKnown RBP16.03■□□□□ 0.16
VSIG4-203ENST00000427538 NCAPD3P42695 1498 aa16■□□□□ 0.15
VSIG4-203ENST00000427538 BAZ1BQ9UIG0 1483 aaKnown RBP15.97■□□□□ 0.15
VSIG4-203ENST00000427538 RSF1Q96T23 1441 aaPredicted RBP15.93■□□□□ 0.14
VSIG4-203ENST00000427538 KCNA4P22459 653 aa15.92■□□□□ 0.14
VSIG4-203ENST00000427538 HMGXB3Q12766 1538 aa15.9■□□□□ 0.14
VSIG4-203ENST00000427538 PEG3Q9GZU2 1588 aa15.9■□□□□ 0.14
VSIG4-203ENST00000427538 WIZO95785 1651 aa15.86■□□□□ 0.13
VSIG4-203ENST00000427538 SUPT5HO00267 1087 aaKnown RBP15.8■□□□□ 0.12
VSIG4-203ENST00000427538 TOP2AP11388 1531 aaKnown RBP15.72■□□□□ 0.11
VSIG4-203ENST00000427538 RNF39Q9H2S5 420 aa15.71■□□□□ 0.11
VSIG4-203ENST00000427538 CACNB1Q02641 598 aaPredicted RBP15.62■□□□□ 0.09
VSIG4-203ENST00000427538 ERCC6Q03468 1493 aa15.61■□□□□ 0.09
VSIG4-203ENST00000427538 CADPSQ9ULU8 1353 aa15.6■□□□□ 0.09
VSIG4-203ENST00000427538 NESP48681 1621 aa15.58■□□□□ 0.09
VSIG4-203ENST00000427538 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.57■□□□□ 0.08
VSIG4-203ENST00000427538 CCDC88BA6NC98 1476 aa15.56■□□□□ 0.08
VSIG4-203ENST00000427538 LAMC3Q9Y6N6 1575 aa15.56■□□□□ 0.08
VSIG4-203ENST00000427538 PDS5BQ9NTI5 1447 aa15.55■□□□□ 0.08
VSIG4-203ENST00000427538 C1QBPQ07021 282 aaKnown RBP15.51■□□□□ 0.07
VSIG4-203ENST00000427538 CFTRP13569 1480 aa15.47■□□□□ 0.07
VSIG4-203ENST00000427538 FANCD2Q9BXW9 1451 aa15.41■□□□□ 0.06
VSIG4-203ENST00000427538 CEP164Q9UPV0 1460 aa15.4■□□□□ 0.06
VSIG4-203ENST00000427538 KIF21AQ7Z4S6 1674 aa15.33■□□□□ 0.04
VSIG4-203ENST00000427538 MRC2Q9UBG0 1479 aa15.33■□□□□ 0.04
VSIG4-203ENST00000427538 CUX2O14529 1486 aa15.31■□□□□ 0.04
VSIG4-203ENST00000427538 THOC2Q8NI27 1593 aaKnown RBP15.25■□□□□ 0.03
VSIG4-203ENST00000427538 U3KPZ7 1027 aaPredicted RBP15.25■□□□□ 0.03
VSIG4-203ENST00000427538 PRDM2Q13029 1718 aa15.24■□□□□ 0.03
VSIG4-203ENST00000427538 SLC4A2P04920 1241 aa15.24■□□□□ 0.03
VSIG4-203ENST00000427538 WDR62O43379 1518 aa15.21■□□□□ 0.03
VSIG4-203ENST00000427538 ABCC8Q09428 1581 aa15.19■□□□□ 0.02
VSIG4-203ENST00000427538 URB2Q14146 1524 aaKnown RBP15.18■□□□□ 0.02
VSIG4-203ENST00000427538 TOPBP1Q92547 1522 aa15.14■□□□□ 0.01
VSIG4-203ENST00000427538 DNMBPQ6XZF7 1577 aa15.12■□□□□ 0.01
VSIG4-203ENST00000427538 SLC4A1APQ9BWU0 796 aaKnown RBP15.1■□□□□ 0.01
VSIG4-203ENST00000427538 WRNQ14191 1432 aaPredicted RBP eCLIP15.08■□□□□ 0
VSIG4-203ENST00000427538 IFT140Q96RY7 1462 aa15.06■□□□□ 0
VSIG4-203ENST00000427538 CUX1P39880 1505 aa15.04■□□□□ -0
VSIG4-203ENST00000427538 SOGA1O94964 1423 aa15.03■□□□□ -0
VSIG4-203ENST00000427538 POLA1P09884 1462 aaPredicted RBP15.01□□□□□ -0.01
VSIG4-203ENST00000427538 FGD5Q6ZNL6 1462 aa15.01□□□□□ -0.01
VSIG4-203ENST00000427538 RAD54L2Q9Y4B4 1467 aa14.98□□□□□ -0.01
VSIG4-203ENST00000427538 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.95□□□□□ -0.02
VSIG4-203ENST00000427538 HNRNPUL2Q1KMD3 747 aaKnown RBP14.95□□□□□ -0.02
VSIG4-203ENST00000427538 SPINK5Q9NQ38 1064 aaPredicted RBP14.94□□□□□ -0.02
VSIG4-203ENST00000427538 TOP2BQ02880 1626 aa14.94□□□□□ -0.02
VSIG4-203ENST00000427538 TDRD9Q8NDG6 1382 aaKnown RBP14.94□□□□□ -0.02
VSIG4-203ENST00000427538 ZNF608Q9ULD9 1512 aaPredicted RBP14.93□□□□□ -0.02
VSIG4-203ENST00000427538 CAPN15O75808 1086 aa14.93□□□□□ -0.02
VSIG4-203ENST00000427538 SYNJ1O43426 1573 aa14.93□□□□□ -0.02
VSIG4-203ENST00000427538 TRIM41Q8WV44 630 aa14.92□□□□□ -0.02
VSIG4-203ENST00000427538 AQRO60306 1485 aaKnown RBP eCLIP14.91□□□□□ -0.02
VSIG4-203ENST00000427538 APLP2Q06481 763 aa14.91□□□□□ -0.02
VSIG4-203ENST00000427538 TARBP1Q13395 1621 aaKnown RBP14.89□□□□□ -0.03
VSIG4-203ENST00000427538 BIVM-ERCC5R4GMW8 1640 aa14.89□□□□□ -0.03
VSIG4-203ENST00000427538 FBLN2P98095 1184 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms