RNA–Protein interactions for RNA: ENST00000425443.6

COL12A1-205, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5

Gene COL12A1, Length 3,135 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-205ENST00000425443 NISCHQ9Y2I1 1504 aa26.84■■□□□ 1.89
COL12A1-205ENST00000425443 SHROOM4Q9ULL8 1493 aa22.95■■□□□ 1.26
COL12A1-205ENST00000425443 CCDC180Q9P1Z9 1646 aa22.84■■□□□ 1.25
COL12A1-205ENST00000425443 DCAF8L2P0C7V8 631 aa22.66■■□□□ 1.22
COL12A1-205ENST00000425443 ZCCHC6Q5VYS8 1495 aaKnown RBP22.63■■□□□ 1.21
COL12A1-205ENST00000425443 SUPT5HO00267 1087 aaKnown RBP22.53■■□□□ 1.2
COL12A1-205ENST00000425443 DCAF1Q9Y4B6 1507 aa21.95■■□□□ 1.11
COL12A1-205ENST00000425443 MYO15BQ96JP2 1530 aa21.88■■□□□ 1.09
COL12A1-205ENST00000425443 CHIC1Q5VXU3 224 aa21.76■■□□□ 1.07
COL12A1-205ENST00000425443 SCRIBQ14160 1630 aa21.49■■□□□ 1.03
COL12A1-205ENST00000425443 ABCC9O60706 1549 aa21.48■■□□□ 1.03
COL12A1-205ENST00000425443 HRCP23327 699 aa21.4■■□□□ 1.02
COL12A1-205ENST00000425443 PCGF6Q9BYE7 350 aa21.33■■□□□ 1.01
COL12A1-205ENST00000425443 PELP1Q8IZL8 1130 aaKnown RBP21.25■□□□□ 0.99
COL12A1-205ENST00000425443 LOC105371045A0A1W2PR82 267 aa21.24■□□□□ 0.99
COL12A1-205ENST00000425443 NACADO15069 1562 aa21.23■□□□□ 0.99
COL12A1-205ENST00000425443 RSF1Q96T23 1441 aaPredicted RBP21.19■□□□□ 0.98
COL12A1-205ENST00000425443 PPARGC1BQ86YN6 1023 aaKnown RBP21.13■□□□□ 0.97
COL12A1-205ENST00000425443 EHMT2Q96KQ7 1210 aa20.99■□□□□ 0.95
COL12A1-205ENST00000425443 RB1CC1Q8TDY2 1594 aa20.96■□□□□ 0.95
COL12A1-205ENST00000425443 CECR2Q9BXF3 1484 aa20.96■□□□□ 0.95
COL12A1-205ENST00000425443 TRIM41Q8WV44 630 aa20.95■□□□□ 0.94
COL12A1-205ENST00000425443 FAM9AQ8IZU1 332 aaPredicted RBP20.92■□□□□ 0.94
COL12A1-205ENST00000425443 MROH2BQ7Z745 1585 aa20.86■□□□□ 0.93
COL12A1-205ENST00000425443 MYT1Q01538 1121 aa20.79■□□□□ 0.92
COL12A1-205ENST00000425443 TRIM26Q12899 539 aaPredicted RBP20.75■□□□□ 0.91
COL12A1-205ENST00000425443 WIZO95785 1651 aa20.74■□□□□ 0.91
COL12A1-205ENST00000425443 BAZ1AQ9NRL2 1556 aaPredicted RBP20.66■□□□□ 0.9
COL12A1-205ENST00000425443 PABPN1Q86U42 306 aaKnown RBP eCLIP20.57■□□□□ 0.88
COL12A1-205ENST00000425443 UNC13AQ9UPW8 1703 aa20.5■□□□□ 0.87
COL12A1-205ENST00000425443 SMARCA4P51532 1647 aa20.47■□□□□ 0.87
COL12A1-205ENST00000425443 TOP2AP11388 1531 aaKnown RBP20.41■□□□□ 0.86
COL12A1-205ENST00000425443 CCDC88BA6NC98 1476 aa20.35■□□□□ 0.85
COL12A1-205ENST00000425443 TTBK1Q5TCY1 1321 aaPredicted RBP20.28■□□□□ 0.84
COL12A1-205ENST00000425443 SMARCA2P51531 1590 aa20.27■□□□□ 0.84
COL12A1-205ENST00000425443 BICRAQ9NZM4 1560 aa20.27■□□□□ 0.83
COL12A1-205ENST00000425443 ABCC8Q09428 1581 aa20.25■□□□□ 0.83
COL12A1-205ENST00000425443 ZEB1P37275 1124 aaPredicted RBP20.23■□□□□ 0.83
COL12A1-205ENST00000425443 EIF4G1Q04637 1599 aaKnown RBP20.22■□□□□ 0.83
COL12A1-205ENST00000425443 PRKCSHP14314 528 aaPredicted RBP20.11■□□□□ 0.81
COL12A1-205ENST00000425443 SOGA1O94964 1423 aa20.04■□□□□ 0.8
COL12A1-205ENST00000425443 UBTFP17480 764 aaKnown RBP20.04■□□□□ 0.8
COL12A1-205ENST00000425443 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.04■□□□□ 0.8
COL12A1-205ENST00000425443 BAZ1BQ9UIG0 1483 aaKnown RBP20.02■□□□□ 0.8
COL12A1-205ENST00000425443 ATAD2BQ9ULI0 1458 aa20.01■□□□□ 0.79
COL12A1-205ENST00000425443 CSRNP3Q8WYN3 585 aa20.01■□□□□ 0.79
COL12A1-205ENST00000425443 PEG3Q9GZU2 1588 aa20.01■□□□□ 0.79
COL12A1-205ENST00000425443 WRNQ14191 1432 aaPredicted RBP eCLIP19.98■□□□□ 0.79
COL12A1-205ENST00000425443 SCAF1Q9H7N4 1312 aaKnown RBP19.95■□□□□ 0.78
COL12A1-205ENST00000425443 EEA1Q15075 1411 aa19.94■□□□□ 0.78
COL12A1-205ENST00000425443 CCER1Q8TC90 406 aaPredicted RBP19.93■□□□□ 0.78
COL12A1-205ENST00000425443 RUSC2Q8N2Y8 1516 aa19.92■□□□□ 0.78
COL12A1-205ENST00000425443 CEP162Q5TB80 1403 aa19.9■□□□□ 0.78
COL12A1-205ENST00000425443 TNIKQ9UKE5 1360 aa19.87■□□□□ 0.77
COL12A1-205ENST00000425443 RANGAP1P46060 587 aaPredicted RBP19.81■□□□□ 0.76
COL12A1-205ENST00000425443 GOLGA3Q08378 1498 aa19.8■□□□□ 0.76
COL12A1-205ENST00000425443 SYNJ1O43426 1573 aa19.79■□□□□ 0.76
COL12A1-205ENST00000425443 CEP164Q9UPV0 1460 aa19.71■□□□□ 0.75
COL12A1-205ENST00000425443 BCL11AQ9H165 835 aa19.65■□□□□ 0.74
COL12A1-205ENST00000425443 NCAPD3P42695 1498 aa19.64■□□□□ 0.73
COL12A1-205ENST00000425443 NEUROD1Q13562 356 aa19.63■□□□□ 0.73
COL12A1-205ENST00000425443 APLP2Q06481 763 aa19.63■□□□□ 0.73
COL12A1-205ENST00000425443 DIEXFQ68CQ4 756 aaKnown RBP19.6■□□□□ 0.73
COL12A1-205ENST00000425443 CLIP1P30622 1438 aa19.6■□□□□ 0.73
COL12A1-205ENST00000425443 HMGXB3Q12766 1538 aa19.6■□□□□ 0.73
COL12A1-205ENST00000425443 KIF21BO75037 1637 aa19.59■□□□□ 0.73
COL12A1-205ENST00000425443 ACIN1Q9UKV3 1341 aaKnown RBP19.58■□□□□ 0.72
COL12A1-205ENST00000425443 HNRNPUL2Q1KMD3 747 aaKnown RBP19.57■□□□□ 0.72
COL12A1-205ENST00000425443 TOP2BQ02880 1626 aa19.57■□□□□ 0.72
COL12A1-205ENST00000425443 RAPGEF2Q9Y4G8 1499 aa19.56■□□□□ 0.72
COL12A1-205ENST00000425443 BIVM-ERCC5R4GMW8 1640 aa19.46■□□□□ 0.71
COL12A1-205ENST00000425443 VPS8Q8N3P4 1428 aa19.45■□□□□ 0.7
COL12A1-205ENST00000425443 CFTRP13569 1480 aa19.44■□□□□ 0.7
COL12A1-205ENST00000425443 CUX1P39880 1505 aa19.42■□□□□ 0.7
COL12A1-205ENST00000425443 KIF27Q86VH2 1401 aa19.41■□□□□ 0.7
COL12A1-205ENST00000425443 GTF3C3Q9Y5Q9 886 aa19.41■□□□□ 0.7
COL12A1-205ENST00000425443 ZNF316A6NFI3 1004 aaPredicted RBP19.37■□□□□ 0.69
COL12A1-205ENST00000425443 ERICH6Q7L0X2 663 aa19.34■□□□□ 0.69
COL12A1-205ENST00000425443 PRXQ9BXM0 1461 aa19.33■□□□□ 0.69
COL12A1-205ENST00000425443 YTHDC1Q96MU7 727 aaKnown RBP19.33■□□□□ 0.69
COL12A1-205ENST00000425443 CADPSQ9ULU8 1353 aa19.33■□□□□ 0.68
COL12A1-205ENST00000425443 ERICH3Q5RHP9 1530 aa19.32■□□□□ 0.68
COL12A1-205ENST00000425443 CENPBP07199 599 aaPredicted RBP19.29■□□□□ 0.68
COL12A1-205ENST00000425443 CC2D2AQ9P2K1 1620 aa19.26■□□□□ 0.67
COL12A1-205ENST00000425443 CUX2O14529 1486 aa19.26■□□□□ 0.67
COL12A1-205ENST00000425443 MIER1Q8N108 512 aa19.24■□□□□ 0.67
COL12A1-205ENST00000425443 ARAP1Q96P48 1450 aa19.19■□□□□ 0.66
COL12A1-205ENST00000425443 PRDM2Q13029 1718 aa19.19■□□□□ 0.66
COL12A1-205ENST00000425443 KANK4Q5T7N3 995 aaPredicted RBP19.17■□□□□ 0.66
COL12A1-205ENST00000425443 FGD5Q6ZNL6 1462 aa19.16■□□□□ 0.66
COL12A1-205ENST00000425443 IGF1RP08069 1367 aa19.15■□□□□ 0.66
COL12A1-205ENST00000425443 ITGAEP38570 1179 aa19.15■□□□□ 0.66
COL12A1-205ENST00000425443 FANCD2Q9BXW9 1451 aa19.14■□□□□ 0.65
COL12A1-205ENST00000425443 CARMIL1Q5VZK9 1371 aa19.14■□□□□ 0.65
COL12A1-205ENST00000425443 SLC24A1O60721 1099 aa19.11■□□□□ 0.65
COL12A1-205ENST00000425443 ATP1B4Q9UN42 357 aaPredicted RBP19.08■□□□□ 0.65
COL12A1-205ENST00000425443 ARHGAP35Q9NRY4 1499 aa19.08■□□□□ 0.64
COL12A1-205ENST00000425443 P3H3Q8IVL6 736 aa19.05■□□□□ 0.64
COL12A1-205ENST00000425443 DHX57Q6P158 1386 aaKnown RBP19.04■□□□□ 0.64
COL12A1-205ENST00000425443 NESP48681 1621 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms