RNA–Protein interactions for RNA: ENST00000421538.1

LINC00899-201, long intergenic non-protein coding RNA 899, humanhuman

TSL 1 (best)

Gene LINC00899, Length 2,584 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00899-201ENST00000421538 NISCHQ9Y2I1 1504 aa29.58■■■□□ 2.33
LINC00899-201ENST00000421538 CCDC180Q9P1Z9 1646 aa25.59■■□□□ 1.69
LINC00899-201ENST00000421538 ZCCHC6Q5VYS8 1495 aaKnown RBP24.88■■□□□ 1.57
LINC00899-201ENST00000421538 DCAF8L2P0C7V8 631 aa24.53■■□□□ 1.52
LINC00899-201ENST00000421538 SHROOM4Q9ULL8 1493 aa24.46■■□□□ 1.51
LINC00899-201ENST00000421538 DCAF1Q9Y4B6 1507 aa24.35■■□□□ 1.49
LINC00899-201ENST00000421538 ABCC9O60706 1549 aa24.22■■□□□ 1.47
LINC00899-201ENST00000421538 MYO15BQ96JP2 1530 aa23.96■■□□□ 1.43
LINC00899-201ENST00000421538 NACADO15069 1562 aa23.81■■□□□ 1.4
LINC00899-201ENST00000421538 SCRIBQ14160 1630 aa23.72■■□□□ 1.39
LINC00899-201ENST00000421538 SUPT5HO00267 1087 aaKnown RBP23.63■■□□□ 1.37
LINC00899-201ENST00000421538 RB1CC1Q8TDY2 1594 aa23.57■■□□□ 1.36
LINC00899-201ENST00000421538 HRCP23327 699 aa23.32■■□□□ 1.32
LINC00899-201ENST00000421538 UNC13AQ9UPW8 1703 aa23.2■■□□□ 1.3
LINC00899-201ENST00000421538 CECR2Q9BXF3 1484 aa23.08■■□□□ 1.28
LINC00899-201ENST00000421538 RSF1Q96T23 1441 aaPredicted RBP23.08■■□□□ 1.28
LINC00899-201ENST00000421538 CHIC1Q5VXU3 224 aa23.04■■□□□ 1.28
LINC00899-201ENST00000421538 BICRAQ9NZM4 1560 aa22.96■■□□□ 1.27
LINC00899-201ENST00000421538 PABPN1Q86U42 306 aaKnown RBP eCLIP22.95■■□□□ 1.26
LINC00899-201ENST00000421538 MROH2BQ7Z745 1585 aa22.93■■□□□ 1.26
LINC00899-201ENST00000421538 PCGF6Q9BYE7 350 aa22.84■■□□□ 1.25
LINC00899-201ENST00000421538 BAZ1AQ9NRL2 1556 aaPredicted RBP22.78■■□□□ 1.24
LINC00899-201ENST00000421538 WIZO95785 1651 aa22.75■■□□□ 1.23
LINC00899-201ENST00000421538 PPARGC1BQ86YN6 1023 aaKnown RBP22.74■■□□□ 1.23
LINC00899-201ENST00000421538 SMARCA4P51532 1647 aa22.69■■□□□ 1.22
LINC00899-201ENST00000421538 PELP1Q8IZL8 1130 aaKnown RBP22.53■■□□□ 1.2
LINC00899-201ENST00000421538 LOC105371045A0A1W2PR82 267 aa22.45■■□□□ 1.18
LINC00899-201ENST00000421538 TOP2AP11388 1531 aaKnown RBP22.43■■□□□ 1.18
LINC00899-201ENST00000421538 PEG3Q9GZU2 1588 aa22.35■■□□□ 1.17
LINC00899-201ENST00000421538 ATAD2BQ9ULI0 1458 aa22.29■■□□□ 1.16
LINC00899-201ENST00000421538 CCDC88BA6NC98 1476 aa22.28■■□□□ 1.16
LINC00899-201ENST00000421538 SMARCA2P51531 1590 aa22.27■■□□□ 1.16
LINC00899-201ENST00000421538 EIF4G1Q04637 1599 aaKnown RBP22.22■■□□□ 1.15
LINC00899-201ENST00000421538 TRIM26Q12899 539 aaPredicted RBP22.18■■□□□ 1.14
LINC00899-201ENST00000421538 BAZ1BQ9UIG0 1483 aaKnown RBP22.16■■□□□ 1.14
LINC00899-201ENST00000421538 TRIM41Q8WV44 630 aa22.1■■□□□ 1.13
LINC00899-201ENST00000421538 ZEB1P37275 1124 aaPredicted RBP22.06■■□□□ 1.12
LINC00899-201ENST00000421538 NCAPD3P42695 1498 aa22.02■■□□□ 1.12
LINC00899-201ENST00000421538 SCAF1Q9H7N4 1312 aaKnown RBP21.98■■□□□ 1.11
LINC00899-201ENST00000421538 HMGXB3Q12766 1538 aa21.97■■□□□ 1.11
LINC00899-201ENST00000421538 ABCC8Q09428 1581 aa21.93■■□□□ 1.1
LINC00899-201ENST00000421538 CC2D2AQ9P2K1 1620 aa21.86■■□□□ 1.09
LINC00899-201ENST00000421538 FAM9AQ8IZU1 332 aaPredicted RBP21.86■■□□□ 1.09
LINC00899-201ENST00000421538 EHMT2Q96KQ7 1210 aa21.73■■□□□ 1.07
LINC00899-201ENST00000421538 WRNQ14191 1432 aaPredicted RBP eCLIP21.69■■□□□ 1.06
LINC00899-201ENST00000421538 MYT1Q01538 1121 aa21.68■■□□□ 1.06
LINC00899-201ENST00000421538 SYNJ1O43426 1573 aa21.62■■□□□ 1.05
LINC00899-201ENST00000421538 CFTRP13569 1480 aa21.61■■□□□ 1.05
LINC00899-201ENST00000421538 SOGA1O94964 1423 aa21.56■■□□□ 1.04
LINC00899-201ENST00000421538 ACIN1Q9UKV3 1341 aaKnown RBP21.52■■□□□ 1.04
LINC00899-201ENST00000421538 RUSC2Q8N2Y8 1516 aa21.51■■□□□ 1.03
LINC00899-201ENST00000421538 CADPSQ9ULU8 1353 aa21.5■■□□□ 1.03
LINC00899-201ENST00000421538 DNAJC5BQ9UF47 199 aa21.46■■□□□ 1.03
LINC00899-201ENST00000421538 TOP2BQ02880 1626 aa21.45■■□□□ 1.02
LINC00899-201ENST00000421538 PRDM2Q13029 1718 aa21.43■■□□□ 1.02
LINC00899-201ENST00000421538 NEUROD1Q13562 356 aa21.41■■□□□ 1.02
LINC00899-201ENST00000421538 BIVM-ERCC5R4GMW8 1640 aa21.41■■□□□ 1.02
LINC00899-201ENST00000421538 CUX1P39880 1505 aa21.4■■□□□ 1.02
LINC00899-201ENST00000421538 EEA1Q15075 1411 aa21.38■■□□□ 1.01
LINC00899-201ENST00000421538 CSRNP3Q8WYN3 585 aa21.37■■□□□ 1.01
LINC00899-201ENST00000421538 NESP48681 1621 aa21.35■■□□□ 1.01
LINC00899-201ENST00000421538 CENPBP07199 599 aaPredicted RBP21.33■■□□□ 1.01
LINC00899-201ENST00000421538 GTF3C3Q9Y5Q9 886 aa21.32■■□□□ 1
LINC00899-201ENST00000421538 FANCD2Q9BXW9 1451 aa21.28■■□□□ 1
LINC00899-201ENST00000421538 LAMC3Q9Y6N6 1575 aa21.21■□□□□ 0.99
LINC00899-201ENST00000421538 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.2■□□□□ 0.98
LINC00899-201ENST00000421538 CCER1Q8TC90 406 aaPredicted RBP21.2■□□□□ 0.98
LINC00899-201ENST00000421538 DIEXFQ68CQ4 756 aaKnown RBP21.19■□□□□ 0.98
LINC00899-201ENST00000421538 GOLGA3Q08378 1498 aa21.16■□□□□ 0.98
LINC00899-201ENST00000421538 TNIKQ9UKE5 1360 aa21.15■□□□□ 0.98
LINC00899-201ENST00000421538 UBTFP17480 764 aaKnown RBP21.15■□□□□ 0.98
LINC00899-201ENST00000421538 CEP164Q9UPV0 1460 aa21.14■□□□□ 0.97
LINC00899-201ENST00000421538 KIF21BO75037 1637 aa21.13■□□□□ 0.97
LINC00899-201ENST00000421538 FGD5Q6ZNL6 1462 aa21.13■□□□□ 0.97
LINC00899-201ENST00000421538 CEP162Q5TB80 1403 aa21.09■□□□□ 0.97
LINC00899-201ENST00000421538 RAPGEF2Q9Y4G8 1499 aa21.09■□□□□ 0.97
LINC00899-201ENST00000421538 KIF27Q86VH2 1401 aa21.08■□□□□ 0.97
LINC00899-201ENST00000421538 TTBK1Q5TCY1 1321 aaPredicted RBP21.08■□□□□ 0.96
LINC00899-201ENST00000421538 DNMBPQ6XZF7 1577 aa21.08■□□□□ 0.96
LINC00899-201ENST00000421538 TOPBP1Q92547 1522 aa21.07■□□□□ 0.96
LINC00899-201ENST00000421538 PDS5BQ9NTI5 1447 aa21.06■□□□□ 0.96
LINC00899-201ENST00000421538 CUX2O14529 1486 aa21.04■□□□□ 0.96
LINC00899-201ENST00000421538 URB2Q14146 1524 aaKnown RBP21.03■□□□□ 0.96
LINC00899-201ENST00000421538 KIF21AQ7Z4S6 1674 aa21.02■□□□□ 0.96
LINC00899-201ENST00000421538 PRXQ9BXM0 1461 aa21.02■□□□□ 0.96
LINC00899-201ENST00000421538 POLA1P09884 1462 aaPredicted RBP21■□□□□ 0.95
LINC00899-201ENST00000421538 RAD54L2Q9Y4B4 1467 aa20.99■□□□□ 0.95
LINC00899-201ENST00000421538 ERICH3Q5RHP9 1530 aa20.94■□□□□ 0.94
LINC00899-201ENST00000421538 IGF1RP08069 1367 aa20.94■□□□□ 0.94
LINC00899-201ENST00000421538 ABCA10Q8WWZ4 1543 aa20.9■□□□□ 0.94
LINC00899-201ENST00000421538 CLIP1P30622 1438 aa20.87■□□□□ 0.93
LINC00899-201ENST00000421538 RANGAP1P46060 587 aaPredicted RBP20.86■□□□□ 0.93
LINC00899-201ENST00000421538 SLC24A1O60721 1099 aa20.83■□□□□ 0.92
LINC00899-201ENST00000421538 CARMIL1Q5VZK9 1371 aa20.82■□□□□ 0.92
LINC00899-201ENST00000421538 WDR97A6NE52 1622 aa20.81■□□□□ 0.92
LINC00899-201ENST00000421538 ZNF316A6NFI3 1004 aaPredicted RBP20.81■□□□□ 0.92
LINC00899-201ENST00000421538 YTHDC1Q96MU7 727 aaKnown RBP20.79■□□□□ 0.92
LINC00899-201ENST00000421538 MRC2Q9UBG0 1479 aa20.79■□□□□ 0.92
LINC00899-201ENST00000421538 TDRD9Q8NDG6 1382 aaKnown RBP20.77■□□□□ 0.92
LINC00899-201ENST00000421538 TARBP1Q13395 1621 aaKnown RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms