RNA–Protein interactions for RNA: ENST00000402383.3

VIM2P-201, Transcript of vimentin 2, pseudogene, humanhuman

BASIC

Gene VIM2P, Length 1,294 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM2P-201ENST00000402383 AEBP2Q6ZN18 517 aaPredicted RBP18.92■□□□□ 0.62
VIM2P-201ENST00000402383 CHIC1Q5VXU3 224 aa18.7■□□□□ 0.58
VIM2P-201ENST00000402383 NISCHQ9Y2I1 1504 aa16.6■□□□□ 0.25
VIM2P-201ENST00000402383 PHF23Q9BUL5 403 aaPredicted RBP16.48■□□□□ 0.23
VIM2P-201ENST00000402383 SENP3Q9H4L4 574 aaPredicted RBP16.01■□□□□ 0.15
VIM2P-201ENST00000402383 PLPPR3Q6T4P5 718 aa15.31■□□□□ 0.04
VIM2P-201ENST00000402383 CCDC180Q9P1Z9 1646 aa14.96□□□□□ -0.01
VIM2P-201ENST00000402383 FOXD1Q16676 465 aa14.84□□□□□ -0.03
VIM2P-201ENST00000402383 ABCC9O60706 1549 aa14.6□□□□□ -0.07
VIM2P-201ENST00000402383 ADRA2BP18089 450 aa14.5□□□□□ -0.09
VIM2P-201ENST00000402383 PPP6R1Q9UPN7 881 aa14.48□□□□□ -0.09
VIM2P-201ENST00000402383 RB1CC1Q8TDY2 1594 aa14.1□□□□□ -0.15
VIM2P-201ENST00000402383 PIAS4Q8N2W9 510 aaPredicted RBP14.09□□□□□ -0.15
VIM2P-201ENST00000402383 NACADO15069 1562 aa14.08□□□□□ -0.16
VIM2P-201ENST00000402383 MYO15BQ96JP2 1530 aa14.04□□□□□ -0.16
VIM2P-201ENST00000402383 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
VIM2P-201ENST00000402383 UNC13AQ9UPW8 1703 aa13.84□□□□□ -0.19
VIM2P-201ENST00000402383 ZCCHC6Q5VYS8 1495 aaKnown RBP13.8□□□□□ -0.2
VIM2P-201ENST00000402383 BICRAQ9NZM4 1560 aa13.71□□□□□ -0.22
VIM2P-201ENST00000402383 SHROOM4Q9ULL8 1493 aa13.66□□□□□ -0.22
VIM2P-201ENST00000402383 DCAF8L2P0C7V8 631 aa13.65□□□□□ -0.22
VIM2P-201ENST00000402383 DNAJC5BQ9UF47 199 aa13.62□□□□□ -0.23
VIM2P-201ENST00000402383 MSH5O43196 834 aa13.58□□□□□ -0.24
VIM2P-201ENST00000402383 PPP4R3CPQ6ZMV5 832 aa13.53□□□□□ -0.24
VIM2P-201ENST00000402383 PABPN1Q86U42 306 aaKnown RBP eCLIP13.53□□□□□ -0.24
VIM2P-201ENST00000402383 KCNA4P22459 653 aa13.51□□□□□ -0.25
VIM2P-201ENST00000402383 SCRIBQ14160 1630 aa13.42□□□□□ -0.26
VIM2P-201ENST00000402383 EIF4G1Q04637 1599 aaKnown RBP13.32□□□□□ -0.28
VIM2P-201ENST00000402383 CC2D2AQ9P2K1 1620 aa13.3□□□□□ -0.28
VIM2P-201ENST00000402383 NCBP3Q53F19 620 aaKnown RBP13.24□□□□□ -0.29
VIM2P-201ENST00000402383 SCAF1Q9H7N4 1312 aaKnown RBP13.23□□□□□ -0.29
VIM2P-201ENST00000402383 CECR2Q9BXF3 1484 aa13.2□□□□□ -0.3
VIM2P-201ENST00000402383 MAPK8IP2Q13387 824 aaPredicted RBP13.08□□□□□ -0.32
VIM2P-201ENST00000402383 CNKSR2Q8WXI2 1034 aa13.08□□□□□ -0.32
VIM2P-201ENST00000402383 NPM3O75607 178 aaKnown RBP13.05□□□□□ -0.32
VIM2P-201ENST00000402383 NCAPD3P42695 1498 aa12.98□□□□□ -0.33
VIM2P-201ENST00000402383 SMARCA4P51532 1647 aa12.93□□□□□ -0.34
VIM2P-201ENST00000402383 PEG3Q9GZU2 1588 aa12.92□□□□□ -0.34
VIM2P-201ENST00000402383 SMARCA2P51531 1590 aa12.91□□□□□ -0.34
VIM2P-201ENST00000402383 SLC4A1APQ9BWU0 796 aaKnown RBP12.91□□□□□ -0.34
VIM2P-201ENST00000402383 HMGXB3Q12766 1538 aa12.91□□□□□ -0.34
VIM2P-201ENST00000402383 ATAD2BQ9ULI0 1458 aa12.9□□□□□ -0.34
VIM2P-201ENST00000402383 BAZ1AQ9NRL2 1556 aaPredicted RBP12.89□□□□□ -0.35
VIM2P-201ENST00000402383 EHMT2Q96KQ7 1210 aa12.88□□□□□ -0.35
VIM2P-201ENST00000402383 DMRT2Q9Y5R5 561 aa12.81□□□□□ -0.36
VIM2P-201ENST00000402383 RNF216Q9NWF9 866 aaPredicted RBP12.75□□□□□ -0.37
VIM2P-201ENST00000402383 MROH2BQ7Z745 1585 aa12.73□□□□□ -0.37
VIM2P-201ENST00000402383 BAZ1BQ9UIG0 1483 aaKnown RBP12.73□□□□□ -0.37
VIM2P-201ENST00000402383 CUX2O14529 1486 aa12.7□□□□□ -0.38
VIM2P-201ENST00000402383 LAMC3Q9Y6N6 1575 aa12.67□□□□□ -0.38
VIM2P-201ENST00000402383 HOXD11P31277 338 aaPredicted RBP12.62□□□□□ -0.39
VIM2P-201ENST00000402383 ERCC6Q03468 1493 aa12.59□□□□□ -0.39
VIM2P-201ENST00000402383 NESP48681 1621 aa12.59□□□□□ -0.39
VIM2P-201ENST00000402383 WIZO95785 1651 aa12.58□□□□□ -0.4
VIM2P-201ENST00000402383 THOC2Q8NI27 1593 aaKnown RBP12.56□□□□□ -0.4
VIM2P-201ENST00000402383 CSRNP3Q8WYN3 585 aa12.54□□□□□ -0.4
VIM2P-201ENST00000402383 CADPSQ9ULU8 1353 aa12.53□□□□□ -0.4
VIM2P-201ENST00000402383 RSF1Q96T23 1441 aaPredicted RBP12.53□□□□□ -0.4
VIM2P-201ENST00000402383 PDS5BQ9NTI5 1447 aa12.53□□□□□ -0.4
VIM2P-201ENST00000402383 KIF21AQ7Z4S6 1674 aa12.52□□□□□ -0.4
VIM2P-201ENST00000402383 DNAJC5Q9H3Z4 198 aa12.5□□□□□ -0.41
VIM2P-201ENST00000402383 TOP2AP11388 1531 aaKnown RBP12.48□□□□□ -0.41
VIM2P-201ENST00000402383 CFTRP13569 1480 aa12.45□□□□□ -0.42
VIM2P-201ENST00000402383 PRDM2Q13029 1718 aa12.42□□□□□ -0.42
VIM2P-201ENST00000402383 WDR62O43379 1518 aa12.42□□□□□ -0.42
VIM2P-201ENST00000402383 ZBTB22O15209 634 aa12.42□□□□□ -0.42
VIM2P-201ENST00000402383 MRC2Q9UBG0 1479 aa12.4□□□□□ -0.42
VIM2P-201ENST00000402383 CEP164Q9UPV0 1460 aa12.36□□□□□ -0.43
VIM2P-201ENST00000402383 FANCD2Q9BXW9 1451 aa12.35□□□□□ -0.43
VIM2P-201ENST00000402383 DCAF8L1A6NGE4 600 aa12.35□□□□□ -0.43
VIM2P-201ENST00000402383 FOXD4L1Q9NU39 408 aa12.35□□□□□ -0.43
VIM2P-201ENST00000402383 CCDC88BA6NC98 1476 aa12.3□□□□□ -0.44
VIM2P-201ENST00000402383 URB2Q14146 1524 aaKnown RBP12.26□□□□□ -0.45
VIM2P-201ENST00000402383 SLC4A2P04920 1241 aa12.25□□□□□ -0.45
VIM2P-201ENST00000402383 ABCC8Q09428 1581 aa12.22□□□□□ -0.45
VIM2P-201ENST00000402383 TOPBP1Q92547 1522 aa12.16□□□□□ -0.46
VIM2P-201ENST00000402383 DNMBPQ6XZF7 1577 aa12.15□□□□□ -0.46
VIM2P-201ENST00000402383 IFT140Q96RY7 1462 aa12.14□□□□□ -0.47
VIM2P-201ENST00000402383 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.1□□□□□ -0.47
VIM2P-201ENST00000402383 TARBP1Q13395 1621 aaKnown RBP12.1□□□□□ -0.47
VIM2P-201ENST00000402383 WDR97A6NE52 1622 aa12.08□□□□□ -0.48
VIM2P-201ENST00000402383 MYCNP04198 464 aaPredicted RBP12.05□□□□□ -0.48
VIM2P-201ENST00000402383 ZNF608Q9ULD9 1512 aaPredicted RBP12.04□□□□□ -0.48
VIM2P-201ENST00000402383 EIF4G3O43432 1585 aaKnown RBP12.04□□□□□ -0.48
VIM2P-201ENST00000402383 POLA1P09884 1462 aaPredicted RBP12.03□□□□□ -0.48
VIM2P-201ENST00000402383 OSCARQ8IYS5 282 aa12.03□□□□□ -0.48
VIM2P-201ENST00000402383 CUX1P39880 1505 aa11.97□□□□□ -0.49
VIM2P-201ENST00000402383 POTEDQ86YR6 584 aa11.96□□□□□ -0.49
VIM2P-201ENST00000402383 FGD5Q6ZNL6 1462 aa11.94□□□□□ -0.5
VIM2P-201ENST00000402383 CHD1O14646 1710 aa11.94□□□□□ -0.5
VIM2P-201ENST00000402383 SOGA1O94964 1423 aa11.94□□□□□ -0.5
VIM2P-201ENST00000402383 AQRO60306 1485 aaKnown RBP eCLIP11.93□□□□□ -0.5
VIM2P-201ENST00000402383 RAD54L2Q9Y4B4 1467 aa11.9□□□□□ -0.5
VIM2P-201ENST00000402383 RIMBP3CA6NJZ7 1639 aa11.9□□□□□ -0.5
VIM2P-201ENST00000402383 RIMBP3BA6NNM3 1639 aa11.9□□□□□ -0.5
VIM2P-201ENST00000402383 RIMBP3Q9UFD9 1639 aa11.9□□□□□ -0.5
VIM2P-201ENST00000402383 BIVM-ERCC5R4GMW8 1640 aa11.89□□□□□ -0.51
VIM2P-201ENST00000402383 MAGI1Q96QZ7 1491 aaPredicted RBP11.89□□□□□ -0.51
VIM2P-201ENST00000402383 U3KPZ7 1027 aaPredicted RBP11.89□□□□□ -0.51
VIM2P-201ENST00000402383 ABCA10Q8WWZ4 1543 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms