RNA–Protein interactions for RNA: ENST00000399355.6

ITSN1-211, Transcript of intersectin 1, humanhuman

TSL 1 (best) BASIC

Gene ITSN1, Length 4,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITSN1-211ENST00000399355 NISCHQ9Y2I1 1504 aa24.06■■□□□ 1.44
ITSN1-211ENST00000399355 SHROOM4Q9ULL8 1493 aa21.56■■□□□ 1.04
ITSN1-211ENST00000399355 DCAF8L2P0C7V8 631 aa21.1■□□□□ 0.97
ITSN1-211ENST00000399355 SUPT5HO00267 1087 aaKnown RBP21.04■□□□□ 0.96
ITSN1-211ENST00000399355 ZCCHC6Q5VYS8 1495 aaKnown RBP20.26■□□□□ 0.83
ITSN1-211ENST00000399355 MYO15BQ96JP2 1530 aa20.09■□□□□ 0.81
ITSN1-211ENST00000399355 CHIC1Q5VXU3 224 aa20■□□□□ 0.79
ITSN1-211ENST00000399355 CCDC180Q9P1Z9 1646 aa19.99■□□□□ 0.79
ITSN1-211ENST00000399355 EHMT2Q96KQ7 1210 aa19.92■□□□□ 0.78
ITSN1-211ENST00000399355 LOC105371045A0A1W2PR82 267 aa19.88■□□□□ 0.77
ITSN1-211ENST00000399355 PCGF6Q9BYE7 350 aa19.71■□□□□ 0.75
ITSN1-211ENST00000399355 FAM9AQ8IZU1 332 aaPredicted RBP19.63■□□□□ 0.73
ITSN1-211ENST00000399355 ABCC9O60706 1549 aa19.58■□□□□ 0.73
ITSN1-211ENST00000399355 SCRIBQ14160 1630 aa19.56■□□□□ 0.72
ITSN1-211ENST00000399355 PPARGC1BQ86YN6 1023 aaKnown RBP19.56■□□□□ 0.72
ITSN1-211ENST00000399355 RSF1Q96T23 1441 aaPredicted RBP19.23■□□□□ 0.67
ITSN1-211ENST00000399355 CECR2Q9BXF3 1484 aa19.23■□□□□ 0.67
ITSN1-211ENST00000399355 HRCP23327 699 aa19.22■□□□□ 0.67
ITSN1-211ENST00000399355 TRIM41Q8WV44 630 aa19.22■□□□□ 0.67
ITSN1-211ENST00000399355 DCAF1Q9Y4B6 1507 aa19.2■□□□□ 0.66
ITSN1-211ENST00000399355 RB1CC1Q8TDY2 1594 aa19.17■□□□□ 0.66
ITSN1-211ENST00000399355 TTBK1Q5TCY1 1321 aaPredicted RBP19.15■□□□□ 0.66
ITSN1-211ENST00000399355 PABPN1Q86U42 306 aaKnown RBP eCLIP19.03■□□□□ 0.64
ITSN1-211ENST00000399355 MROH2BQ7Z745 1585 aa18.99■□□□□ 0.63
ITSN1-211ENST00000399355 WIZO95785 1651 aa18.92■□□□□ 0.62
ITSN1-211ENST00000399355 TRIM26Q12899 539 aaPredicted RBP18.79■□□□□ 0.6
ITSN1-211ENST00000399355 RANGAP1P46060 587 aaPredicted RBP18.71■□□□□ 0.59
ITSN1-211ENST00000399355 ABCC8Q09428 1581 aa18.68■□□□□ 0.58
ITSN1-211ENST00000399355 NACADO15069 1562 aa18.64■□□□□ 0.57
ITSN1-211ENST00000399355 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.63■□□□□ 0.57
ITSN1-211ENST00000399355 CCDC88BA6NC98 1476 aa18.54■□□□□ 0.56
ITSN1-211ENST00000399355 RUSC2Q8N2Y8 1516 aa18.5■□□□□ 0.55
ITSN1-211ENST00000399355 SOGA1O94964 1423 aa18.49■□□□□ 0.55
ITSN1-211ENST00000399355 UNC13AQ9UPW8 1703 aa18.44■□□□□ 0.54
ITSN1-211ENST00000399355 UBTFP17480 764 aaKnown RBP18.44■□□□□ 0.54
ITSN1-211ENST00000399355 BAZ1AQ9NRL2 1556 aaPredicted RBP18.37■□□□□ 0.53
ITSN1-211ENST00000399355 SMARCA4P51532 1647 aa18.32■□□□□ 0.52
ITSN1-211ENST00000399355 CCER1Q8TC90 406 aaPredicted RBP18.32■□□□□ 0.52
ITSN1-211ENST00000399355 SMARCA2P51531 1590 aa18.28■□□□□ 0.52
ITSN1-211ENST00000399355 EIF4G1Q04637 1599 aaKnown RBP18.24■□□□□ 0.51
ITSN1-211ENST00000399355 TOP2AP11388 1531 aaKnown RBP18.21■□□□□ 0.51
ITSN1-211ENST00000399355 BICRAQ9NZM4 1560 aa18.21■□□□□ 0.51
ITSN1-211ENST00000399355 HNRNPUL2Q1KMD3 747 aaKnown RBP18.2■□□□□ 0.5
ITSN1-211ENST00000399355 CSRNP3Q8WYN3 585 aa18.19■□□□□ 0.5
ITSN1-211ENST00000399355 CEP162Q5TB80 1403 aa18.17■□□□□ 0.5
ITSN1-211ENST00000399355 WRNQ14191 1432 aaPredicted RBP eCLIP18.04■□□□□ 0.48
ITSN1-211ENST00000399355 SYNJ1O43426 1573 aa18.02■□□□□ 0.48
ITSN1-211ENST00000399355 SCAF1Q9H7N4 1312 aaKnown RBP17.99■□□□□ 0.47
ITSN1-211ENST00000399355 ZEB1P37275 1124 aaPredicted RBP17.98■□□□□ 0.47
ITSN1-211ENST00000399355 ATAD2BQ9ULI0 1458 aa17.96■□□□□ 0.47
ITSN1-211ENST00000399355 BAZ1BQ9UIG0 1483 aaKnown RBP17.94■□□□□ 0.46
ITSN1-211ENST00000399355 YTHDC1Q96MU7 727 aaKnown RBP17.93■□□□□ 0.46
ITSN1-211ENST00000399355 RAPGEF2Q9Y4G8 1499 aa17.92■□□□□ 0.46
ITSN1-211ENST00000399355 ITGAEP38570 1179 aa17.92■□□□□ 0.46
ITSN1-211ENST00000399355 TNIKQ9UKE5 1360 aa17.89■□□□□ 0.46
ITSN1-211ENST00000399355 NEUROD1Q13562 356 aa17.84■□□□□ 0.45
ITSN1-211ENST00000399355 DIEXFQ68CQ4 756 aaKnown RBP17.84■□□□□ 0.45
ITSN1-211ENST00000399355 CLIP1P30622 1438 aa17.82■□□□□ 0.44
ITSN1-211ENST00000399355 KANK4Q5T7N3 995 aaPredicted RBP17.82■□□□□ 0.44
ITSN1-211ENST00000399355 GOLGA3Q08378 1498 aa17.81■□□□□ 0.44
ITSN1-211ENST00000399355 P3H3Q8IVL6 736 aa17.8■□□□□ 0.44
ITSN1-211ENST00000399355 DNAJC5BQ9UF47 199 aa17.75■□□□□ 0.43
ITSN1-211ENST00000399355 APLP2Q06481 763 aa17.75■□□□□ 0.43
ITSN1-211ENST00000399355 ATP1B4Q9UN42 357 aaPredicted RBP17.75■□□□□ 0.43
ITSN1-211ENST00000399355 CEP164Q9UPV0 1460 aa17.67■□□□□ 0.42
ITSN1-211ENST00000399355 MIER1Q8N108 512 aa17.63■□□□□ 0.41
ITSN1-211ENST00000399355 PEG3Q9GZU2 1588 aa17.63■□□□□ 0.41
ITSN1-211ENST00000399355 GTF3C3Q9Y5Q9 886 aa17.62■□□□□ 0.41
ITSN1-211ENST00000399355 CUX1P39880 1505 aa17.6■□□□□ 0.41
ITSN1-211ENST00000399355 EEA1Q15075 1411 aa17.6■□□□□ 0.41
ITSN1-211ENST00000399355 KIF21BO75037 1637 aa17.59■□□□□ 0.41
ITSN1-211ENST00000399355 VPS8Q8N3P4 1428 aa17.58■□□□□ 0.41
ITSN1-211ENST00000399355 ARAP1Q96P48 1450 aa17.56■□□□□ 0.4
ITSN1-211ENST00000399355 ACIN1Q9UKV3 1341 aaKnown RBP17.55■□□□□ 0.4
ITSN1-211ENST00000399355 ZNF316A6NFI3 1004 aaPredicted RBP17.55■□□□□ 0.4
ITSN1-211ENST00000399355 HIRIP3Q9BW71 556 aaPredicted RBP17.51■□□□□ 0.39
ITSN1-211ENST00000399355 ARID3CA6NKF2 412 aa17.5■□□□□ 0.39
ITSN1-211ENST00000399355 TOP2BQ02880 1626 aa17.5■□□□□ 0.39
ITSN1-211ENST00000399355 NESP48681 1621 aa17.47■□□□□ 0.39
ITSN1-211ENST00000399355 CUX2O14529 1486 aa17.46■□□□□ 0.39
ITSN1-211ENST00000399355 FAM50AQ14320 339 aaKnown RBP17.43■□□□□ 0.38
ITSN1-211ENST00000399355 PRXQ9BXM0 1461 aa17.41■□□□□ 0.38
ITSN1-211ENST00000399355 NCAPD3P42695 1498 aa17.41■□□□□ 0.38
ITSN1-211ENST00000399355 KCNH8Q96L42 1107 aa17.4■□□□□ 0.38
ITSN1-211ENST00000399355 RAD54L2Q9Y4B4 1467 aa17.4■□□□□ 0.38
ITSN1-211ENST00000399355 KIF27Q86VH2 1401 aa17.39■□□□□ 0.37
ITSN1-211ENST00000399355 SIN3AQ96ST3 1273 aa17.37■□□□□ 0.37
ITSN1-211ENST00000399355 ARHGAP35Q9NRY4 1499 aa17.37■□□□□ 0.37
ITSN1-211ENST00000399355 IGF1RP08069 1367 aa17.36■□□□□ 0.37
ITSN1-211ENST00000399355 CFTRP13569 1480 aa17.36■□□□□ 0.37
ITSN1-211ENST00000399355 DHX57Q6P158 1386 aaKnown RBP17.33■□□□□ 0.37
ITSN1-211ENST00000399355 BIVM-ERCC5R4GMW8 1640 aa17.33■□□□□ 0.36
ITSN1-211ENST00000399355 FGD5Q6ZNL6 1462 aa17.32■□□□□ 0.36
ITSN1-211ENST00000399355 CARMIL1Q5VZK9 1371 aa17.29■□□□□ 0.36
ITSN1-211ENST00000399355 CADPSQ9ULU8 1353 aa17.28■□□□□ 0.36
ITSN1-211ENST00000399355 CC2D2AQ9P2K1 1620 aa17.28■□□□□ 0.36
ITSN1-211ENST00000399355 TDRD9Q8NDG6 1382 aaKnown RBP17.28■□□□□ 0.36
ITSN1-211ENST00000399355 FHOD3Q2V2M9 1422 aa17.27■□□□□ 0.36
ITSN1-211ENST00000399355 CENPBP07199 599 aaPredicted RBP17.26■□□□□ 0.35
ITSN1-211ENST00000399355 HMGXB3Q12766 1538 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms