RNA–Protein interactions for RNA: ENST00000399264.1

CCDC144A-205, Transcript of coiled-coil domain containing 144A, humanhuman

TSL 2

Gene CCDC144A, Length 2,815 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144A-205ENST00000399264 NISCHQ9Y2I1 1504 aa30.02■■■□□ 2.4
CCDC144A-205ENST00000399264 SHROOM4Q9ULL8 1493 aa25.98■■□□□ 1.75
CCDC144A-205ENST00000399264 SUPT5HO00267 1087 aaKnown RBP25.47■■□□□ 1.67
CCDC144A-205ENST00000399264 ZCCHC6Q5VYS8 1495 aaKnown RBP25.36■■□□□ 1.65
CCDC144A-205ENST00000399264 CCDC180Q9P1Z9 1646 aa25.31■■□□□ 1.64
CCDC144A-205ENST00000399264 DCAF8L2P0C7V8 631 aa25.27■■□□□ 1.64
CCDC144A-205ENST00000399264 CHIC1Q5VXU3 224 aa24.66■■□□□ 1.54
CCDC144A-205ENST00000399264 MYO15BQ96JP2 1530 aa24.62■■□□□ 1.53
CCDC144A-205ENST00000399264 DCAF1Q9Y4B6 1507 aa24.44■■□□□ 1.5
CCDC144A-205ENST00000399264 LOC105371045A0A1W2PR82 267 aa24.1■■□□□ 1.45
CCDC144A-205ENST00000399264 PCGF6Q9BYE7 350 aa24.02■■□□□ 1.44
CCDC144A-205ENST00000399264 SCRIBQ14160 1630 aa24.02■■□□□ 1.44
CCDC144A-205ENST00000399264 ABCC9O60706 1549 aa23.91■■□□□ 1.42
CCDC144A-205ENST00000399264 HRCP23327 699 aa23.89■■□□□ 1.41
CCDC144A-205ENST00000399264 RSF1Q96T23 1441 aaPredicted RBP23.86■■□□□ 1.41
CCDC144A-205ENST00000399264 PPARGC1BQ86YN6 1023 aaKnown RBP23.66■■□□□ 1.38
CCDC144A-205ENST00000399264 RB1CC1Q8TDY2 1594 aa23.63■■□□□ 1.37
CCDC144A-205ENST00000399264 FAM9AQ8IZU1 332 aaPredicted RBP23.6■■□□□ 1.37
CCDC144A-205ENST00000399264 CECR2Q9BXF3 1484 aa23.6■■□□□ 1.37
CCDC144A-205ENST00000399264 TRIM41Q8WV44 630 aa23.58■■□□□ 1.37
CCDC144A-205ENST00000399264 EHMT2Q96KQ7 1210 aa23.55■■□□□ 1.36
CCDC144A-205ENST00000399264 NACADO15069 1562 aa23.45■■□□□ 1.34
CCDC144A-205ENST00000399264 MROH2BQ7Z745 1585 aa23.45■■□□□ 1.34
CCDC144A-205ENST00000399264 TRIM26Q12899 539 aaPredicted RBP23.37■■□□□ 1.33
CCDC144A-205ENST00000399264 WIZO95785 1651 aa23.32■■□□□ 1.32
CCDC144A-205ENST00000399264 BAZ1AQ9NRL2 1556 aaPredicted RBP23.01■■□□□ 1.27
CCDC144A-205ENST00000399264 PABPN1Q86U42 306 aaKnown RBP eCLIP22.9■■□□□ 1.26
CCDC144A-205ENST00000399264 EIF4G1Q04637 1599 aaKnown RBP22.89■■□□□ 1.25
CCDC144A-205ENST00000399264 ABCC8Q09428 1581 aa22.88■■□□□ 1.25
CCDC144A-205ENST00000399264 UNC13AQ9UPW8 1703 aa22.87■■□□□ 1.25
CCDC144A-205ENST00000399264 CCDC88BA6NC98 1476 aa22.85■■□□□ 1.25
CCDC144A-205ENST00000399264 SMARCA4P51532 1647 aa22.84■■□□□ 1.25
CCDC144A-205ENST00000399264 TOP2AP11388 1531 aaKnown RBP22.8■■□□□ 1.24
CCDC144A-205ENST00000399264 SMARCA2P51531 1590 aa22.75■■□□□ 1.23
CCDC144A-205ENST00000399264 TTBK1Q5TCY1 1321 aaPredicted RBP22.75■■□□□ 1.23
CCDC144A-205ENST00000399264 ZEB1P37275 1124 aaPredicted RBP22.7■■□□□ 1.22
CCDC144A-205ENST00000399264 SOGA1O94964 1423 aa22.69■■□□□ 1.22
CCDC144A-205ENST00000399264 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.64■■□□□ 1.21
CCDC144A-205ENST00000399264 RUSC2Q8N2Y8 1516 aa22.63■■□□□ 1.21
CCDC144A-205ENST00000399264 BICRAQ9NZM4 1560 aa22.6■■□□□ 1.21
CCDC144A-205ENST00000399264 CEP162Q5TB80 1403 aa22.5■■□□□ 1.19
CCDC144A-205ENST00000399264 UBTFP17480 764 aaKnown RBP22.5■■□□□ 1.19
CCDC144A-205ENST00000399264 CSRNP3Q8WYN3 585 aa22.5■■□□□ 1.19
CCDC144A-205ENST00000399264 CCER1Q8TC90 406 aaPredicted RBP22.46■■□□□ 1.19
CCDC144A-205ENST00000399264 TNIKQ9UKE5 1360 aa22.39■■□□□ 1.17
CCDC144A-205ENST00000399264 WRNQ14191 1432 aaPredicted RBP eCLIP22.38■■□□□ 1.17
CCDC144A-205ENST00000399264 ATAD2BQ9ULI0 1458 aa22.3■■□□□ 1.16
CCDC144A-205ENST00000399264 SYNJ1O43426 1573 aa22.29■■□□□ 1.16
CCDC144A-205ENST00000399264 PEG3Q9GZU2 1588 aa22.29■■□□□ 1.16
CCDC144A-205ENST00000399264 RANGAP1P46060 587 aaPredicted RBP22.26■■□□□ 1.15
CCDC144A-205ENST00000399264 EEA1Q15075 1411 aa22.26■■□□□ 1.15
CCDC144A-205ENST00000399264 GOLGA3Q08378 1498 aa22.23■■□□□ 1.15
CCDC144A-205ENST00000399264 BAZ1BQ9UIG0 1483 aaKnown RBP22.23■■□□□ 1.15
CCDC144A-205ENST00000399264 SCAF1Q9H7N4 1312 aaKnown RBP22.14■■□□□ 1.13
CCDC144A-205ENST00000399264 HNRNPUL2Q1KMD3 747 aaKnown RBP22.1■■□□□ 1.13
CCDC144A-205ENST00000399264 CEP164Q9UPV0 1460 aa22.09■■□□□ 1.13
CCDC144A-205ENST00000399264 RAPGEF2Q9Y4G8 1499 aa22.09■■□□□ 1.13
CCDC144A-205ENST00000399264 CLIP1P30622 1438 aa22.07■■□□□ 1.12
CCDC144A-205ENST00000399264 DIEXFQ68CQ4 756 aaKnown RBP22.02■■□□□ 1.11
CCDC144A-205ENST00000399264 KIF21BO75037 1637 aa22.01■■□□□ 1.11
CCDC144A-205ENST00000399264 VPS8Q8N3P4 1428 aa21.92■■□□□ 1.1
CCDC144A-205ENST00000399264 TOP2BQ02880 1626 aa21.91■■□□□ 1.1
CCDC144A-205ENST00000399264 NEUROD1Q13562 356 aa21.9■■□□□ 1.1
CCDC144A-205ENST00000399264 APLP2Q06481 763 aa21.88■■□□□ 1.09
CCDC144A-205ENST00000399264 ACIN1Q9UKV3 1341 aaKnown RBP21.81■■□□□ 1.08
CCDC144A-205ENST00000399264 ZNF316A6NFI3 1004 aaPredicted RBP21.79■■□□□ 1.08
CCDC144A-205ENST00000399264 CUX1P39880 1505 aa21.79■■□□□ 1.08
CCDC144A-205ENST00000399264 NCAPD3P42695 1498 aa21.79■■□□□ 1.08
CCDC144A-205ENST00000399264 BIVM-ERCC5R4GMW8 1640 aa21.78■■□□□ 1.08
CCDC144A-205ENST00000399264 KANK4Q5T7N3 995 aaPredicted RBP21.77■■□□□ 1.08
CCDC144A-205ENST00000399264 PRXQ9BXM0 1461 aa21.75■■□□□ 1.07
CCDC144A-205ENST00000399264 ARAP1Q96P48 1450 aa21.71■■□□□ 1.07
CCDC144A-205ENST00000399264 HMGXB3Q12766 1538 aa21.7■■□□□ 1.07
CCDC144A-205ENST00000399264 CFTRP13569 1480 aa21.66■■□□□ 1.06
CCDC144A-205ENST00000399264 YTHDC1Q96MU7 727 aaKnown RBP21.65■■□□□ 1.06
CCDC144A-205ENST00000399264 GTF3C3Q9Y5Q9 886 aa21.65■■□□□ 1.06
CCDC144A-205ENST00000399264 KIF27Q86VH2 1401 aa21.64■■□□□ 1.05
CCDC144A-205ENST00000399264 ERICH3Q5RHP9 1530 aa21.64■■□□□ 1.05
CCDC144A-205ENST00000399264 MIER1Q8N108 512 aa21.62■■□□□ 1.05
CCDC144A-205ENST00000399264 CENPBP07199 599 aaPredicted RBP21.57■■□□□ 1.04
CCDC144A-205ENST00000399264 ITGAEP38570 1179 aa21.55■■□□□ 1.04
CCDC144A-205ENST00000399264 ARHGAP35Q9NRY4 1499 aa21.52■■□□□ 1.04
CCDC144A-205ENST00000399264 CUX2O14529 1486 aa21.51■■□□□ 1.03
CCDC144A-205ENST00000399264 DHX57Q6P158 1386 aaKnown RBP21.5■■□□□ 1.03
CCDC144A-205ENST00000399264 IGF1RP08069 1367 aa21.5■■□□□ 1.03
CCDC144A-205ENST00000399264 CADPSQ9ULU8 1353 aa21.45■■□□□ 1.02
CCDC144A-205ENST00000399264 P3H3Q8IVL6 736 aa21.43■■□□□ 1.02
CCDC144A-205ENST00000399264 FGD5Q6ZNL6 1462 aa21.4■■□□□ 1.02
CCDC144A-205ENST00000399264 RRBP1Q9P2E9 1410 aaKnown RBP21.39■■□□□ 1.02
CCDC144A-205ENST00000399264 CARMIL1Q5VZK9 1371 aa21.39■■□□□ 1.01
CCDC144A-205ENST00000399264 CCNB3Q8WWL7 1395 aa21.37■■□□□ 1.01
CCDC144A-205ENST00000399264 ATP1B4Q9UN42 357 aaPredicted RBP21.33■■□□□ 1.01
CCDC144A-205ENST00000399264 PRDM2Q13029 1718 aa21.31■■□□□ 1
CCDC144A-205ENST00000399264 CC2D2AQ9P2K1 1620 aa21.3■■□□□ 1
CCDC144A-205ENST00000399264 RAD54L2Q9Y4B4 1467 aa21.29■■□□□ 1
CCDC144A-205ENST00000399264 PELP1Q8IZL8 1130 aaKnown RBP21.28■■□□□ 1
CCDC144A-205ENST00000399264 CLSPNQ9HAW4 1339 aa21.28■■□□□ 1
CCDC144A-205ENST00000399264 FANCD2Q9BXW9 1451 aa21.25■□□□□ 0.99
CCDC144A-205ENST00000399264 NESP48681 1621 aa21.25■□□□□ 0.99
CCDC144A-205ENST00000399264 RAB3GAP2Q9H2M9 1393 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms