RNA–Protein interactions for RNA: ENST00000398661.6

HMGCLL1-205, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 2 BASIC

Gene HMGCLL1, Length 2,532 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-205ENST00000398661 NISCHQ9Y2I1 1504 aa21.58■■□□□ 1.05
HMGCLL1-205ENST00000398661 CCDC180Q9P1Z9 1646 aa18.57■□□□□ 0.56
HMGCLL1-205ENST00000398661 DCAF8L2P0C7V8 631 aa18.49■□□□□ 0.55
HMGCLL1-205ENST00000398661 ABCC9O60706 1549 aa18.24■□□□□ 0.51
HMGCLL1-205ENST00000398661 SHROOM4Q9ULL8 1493 aa18.12■□□□□ 0.49
HMGCLL1-205ENST00000398661 ZCCHC6Q5VYS8 1495 aaKnown RBP18.06■□□□□ 0.48
HMGCLL1-205ENST00000398661 DCAF1Q9Y4B6 1507 aa17.55■□□□□ 0.4
HMGCLL1-205ENST00000398661 SCRIBQ14160 1630 aa17.52■□□□□ 0.4
HMGCLL1-205ENST00000398661 NACADO15069 1562 aa17.42■□□□□ 0.38
HMGCLL1-205ENST00000398661 PABPN1Q86U42 306 aaKnown RBP eCLIP17.38■□□□□ 0.37
HMGCLL1-205ENST00000398661 SUPT5HO00267 1087 aaKnown RBP17.37■□□□□ 0.37
HMGCLL1-205ENST00000398661 RB1CC1Q8TDY2 1594 aa17.36■□□□□ 0.37
HMGCLL1-205ENST00000398661 MYO15BQ96JP2 1530 aa17.31■□□□□ 0.36
HMGCLL1-205ENST00000398661 UNC13AQ9UPW8 1703 aa17.11■□□□□ 0.33
HMGCLL1-205ENST00000398661 CECR2Q9BXF3 1484 aa17.03■□□□□ 0.32
HMGCLL1-205ENST00000398661 HRCP23327 699 aa17.03■□□□□ 0.32
HMGCLL1-205ENST00000398661 BICRAQ9NZM4 1560 aa16.97■□□□□ 0.31
HMGCLL1-205ENST00000398661 RSF1Q96T23 1441 aaPredicted RBP16.83■□□□□ 0.28
HMGCLL1-205ENST00000398661 MROH2BQ7Z745 1585 aa16.82■□□□□ 0.28
HMGCLL1-205ENST00000398661 PELP1Q8IZL8 1130 aaKnown RBP16.75■□□□□ 0.27
HMGCLL1-205ENST00000398661 WIZO95785 1651 aa16.68■□□□□ 0.26
HMGCLL1-205ENST00000398661 PPARGC1BQ86YN6 1023 aaKnown RBP16.6■□□□□ 0.25
HMGCLL1-205ENST00000398661 BAZ1AQ9NRL2 1556 aaPredicted RBP16.6■□□□□ 0.25
HMGCLL1-205ENST00000398661 SMARCA4P51532 1647 aa16.59■□□□□ 0.25
HMGCLL1-205ENST00000398661 PCGF6Q9BYE7 350 aa16.53■□□□□ 0.24
HMGCLL1-205ENST00000398661 EIF4G1Q04637 1599 aaKnown RBP16.48■□□□□ 0.23
HMGCLL1-205ENST00000398661 DNAJC5BQ9UF47 199 aa16.45■□□□□ 0.22
HMGCLL1-205ENST00000398661 ATAD2BQ9ULI0 1458 aa16.42■□□□□ 0.22
HMGCLL1-205ENST00000398661 CHIC1Q5VXU3 224 aa16.34■□□□□ 0.21
HMGCLL1-205ENST00000398661 BAZ1BQ9UIG0 1483 aaKnown RBP16.32■□□□□ 0.2
HMGCLL1-205ENST00000398661 CCDC88BA6NC98 1476 aa16.31■□□□□ 0.2
HMGCLL1-205ENST00000398661 CC2D2AQ9P2K1 1620 aa16.3■□□□□ 0.2
HMGCLL1-205ENST00000398661 TOP2AP11388 1531 aaKnown RBP16.29■□□□□ 0.2
HMGCLL1-205ENST00000398661 SMARCA2P51531 1590 aa16.24■□□□□ 0.19
HMGCLL1-205ENST00000398661 PEG3Q9GZU2 1588 aa16.22■□□□□ 0.19
HMGCLL1-205ENST00000398661 SCAF1Q9H7N4 1312 aaKnown RBP16.19■□□□□ 0.18
HMGCLL1-205ENST00000398661 NCAPD3P42695 1498 aa16.18■□□□□ 0.18
HMGCLL1-205ENST00000398661 MYT1Q01538 1121 aa16.17■□□□□ 0.18
HMGCLL1-205ENST00000398661 EHMT2Q96KQ7 1210 aa16.16■□□□□ 0.18
HMGCLL1-205ENST00000398661 FAM9AQ8IZU1 332 aaPredicted RBP16.13■□□□□ 0.17
HMGCLL1-205ENST00000398661 TRIM41Q8WV44 630 aa16.12■□□□□ 0.17
HMGCLL1-205ENST00000398661 ABCC8Q09428 1581 aa16.08■□□□□ 0.16
HMGCLL1-205ENST00000398661 HMGXB3Q12766 1538 aa16.05■□□□□ 0.16
HMGCLL1-205ENST00000398661 TRIM26Q12899 539 aaPredicted RBP16.01■□□□□ 0.15
HMGCLL1-205ENST00000398661 NESP48681 1621 aa16■□□□□ 0.15
HMGCLL1-205ENST00000398661 LOC105371045A0A1W2PR82 267 aa15.98■□□□□ 0.15
HMGCLL1-205ENST00000398661 ZEB1P37275 1124 aaPredicted RBP15.98■□□□□ 0.15
HMGCLL1-205ENST00000398661 CADPSQ9ULU8 1353 aa15.88■□□□□ 0.13
HMGCLL1-205ENST00000398661 CFTRP13569 1480 aa15.85■□□□□ 0.13
HMGCLL1-205ENST00000398661 WRNQ14191 1432 aaPredicted RBP eCLIP15.82■□□□□ 0.12
HMGCLL1-205ENST00000398661 SYNJ1O43426 1573 aa15.78■□□□□ 0.12
HMGCLL1-205ENST00000398661 SOGA1O94964 1423 aa15.78■□□□□ 0.12
HMGCLL1-205ENST00000398661 RUSC2Q8N2Y8 1516 aa15.77■□□□□ 0.12
HMGCLL1-205ENST00000398661 ACIN1Q9UKV3 1341 aaKnown RBP15.76■□□□□ 0.11
HMGCLL1-205ENST00000398661 FANCD2Q9BXW9 1451 aa15.73■□□□□ 0.11
HMGCLL1-205ENST00000398661 CUX1P39880 1505 aa15.69■□□□□ 0.1
HMGCLL1-205ENST00000398661 NEUROD1Q13562 356 aa15.67■□□□□ 0.1
HMGCLL1-205ENST00000398661 RANGAP1P46060 587 aaPredicted RBP15.63■□□□□ 0.09
HMGCLL1-205ENST00000398661 GTF3C3Q9Y5Q9 886 aa15.61■□□□□ 0.09
HMGCLL1-205ENST00000398661 KIF21AQ7Z4S6 1674 aa15.59■□□□□ 0.09
HMGCLL1-205ENST00000398661 CEP164Q9UPV0 1460 aa15.59■□□□□ 0.09
HMGCLL1-205ENST00000398661 LAMC3Q9Y6N6 1575 aa15.58■□□□□ 0.09
HMGCLL1-205ENST00000398661 RAD54L2Q9Y4B4 1467 aa15.58■□□□□ 0.08
HMGCLL1-205ENST00000398661 PDS5BQ9NTI5 1447 aa15.58■□□□□ 0.08
HMGCLL1-205ENST00000398661 URB2Q14146 1524 aaKnown RBP15.57■□□□□ 0.08
HMGCLL1-205ENST00000398661 TOP2BQ02880 1626 aa15.56■□□□□ 0.08
HMGCLL1-205ENST00000398661 CSRNP3Q8WYN3 585 aa15.55■□□□□ 0.08
HMGCLL1-205ENST00000398661 ERCC6Q03468 1493 aa15.55■□□□□ 0.08
HMGCLL1-205ENST00000398661 FGD5Q6ZNL6 1462 aa15.55■□□□□ 0.08
HMGCLL1-205ENST00000398661 CENPBP07199 599 aaPredicted RBP15.53■□□□□ 0.08
HMGCLL1-205ENST00000398661 TOPBP1Q92547 1522 aa15.52■□□□□ 0.07
HMGCLL1-205ENST00000398661 UBTFP17480 764 aaKnown RBP15.51■□□□□ 0.07
HMGCLL1-205ENST00000398661 PRDM2Q13029 1718 aa15.51■□□□□ 0.07
HMGCLL1-205ENST00000398661 TDRD9Q8NDG6 1382 aaKnown RBP15.49■□□□□ 0.07
HMGCLL1-205ENST00000398661 POLA1P09884 1462 aaPredicted RBP15.48■□□□□ 0.07
HMGCLL1-205ENST00000398661 CUX2O14529 1486 aa15.47■□□□□ 0.07
HMGCLL1-205ENST00000398661 BIVM-ERCC5R4GMW8 1640 aa15.47■□□□□ 0.07
HMGCLL1-205ENST00000398661 DNMBPQ6XZF7 1577 aa15.42■□□□□ 0.06
HMGCLL1-205ENST00000398661 RAPGEF2Q9Y4G8 1499 aa15.39■□□□□ 0.05
HMGCLL1-205ENST00000398661 MRC2Q9UBG0 1479 aa15.38■□□□□ 0.05
HMGCLL1-205ENST00000398661 KIF27Q86VH2 1401 aa15.37■□□□□ 0.05
HMGCLL1-205ENST00000398661 AQRO60306 1485 aaKnown RBP eCLIP15.37■□□□□ 0.05
HMGCLL1-205ENST00000398661 DIEXFQ68CQ4 756 aaKnown RBP15.37■□□□□ 0.05
HMGCLL1-205ENST00000398661 TTBK1Q5TCY1 1321 aaPredicted RBP15.37■□□□□ 0.05
HMGCLL1-205ENST00000398661 IGF1RP08069 1367 aa15.35■□□□□ 0.05
HMGCLL1-205ENST00000398661 ZNF608Q9ULD9 1512 aaPredicted RBP15.35■□□□□ 0.05
HMGCLL1-205ENST00000398661 FBLN2P98095 1184 aa15.28■□□□□ 0.04
HMGCLL1-205ENST00000398661 EEA1Q15075 1411 aa15.28■□□□□ 0.04
HMGCLL1-205ENST00000398661 ABCA10Q8WWZ4 1543 aa15.27■□□□□ 0.03
HMGCLL1-205ENST00000398661 CARMIL1Q5VZK9 1371 aa15.26■□□□□ 0.03
HMGCLL1-205ENST00000398661 THOC2Q8NI27 1593 aaKnown RBP15.26■□□□□ 0.03
HMGCLL1-205ENST00000398661 P3H3Q8IVL6 736 aa15.25■□□□□ 0.03
HMGCLL1-205ENST00000398661 CCER1Q8TC90 406 aaPredicted RBP15.25■□□□□ 0.03
HMGCLL1-205ENST00000398661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.25■□□□□ 0.03
HMGCLL1-205ENST00000398661 WDR62O43379 1518 aa15.24■□□□□ 0.03
HMGCLL1-205ENST00000398661 GOLGA3Q08378 1498 aa15.24■□□□□ 0.03
HMGCLL1-205ENST00000398661 GAPVD1Q14C86 1478 aa15.24■□□□□ 0.03
HMGCLL1-205ENST00000398661 CEP162Q5TB80 1403 aa15.23■□□□□ 0.03
HMGCLL1-205ENST00000398661 PRXQ9BXM0 1461 aa15.23■□□□□ 0.03
HMGCLL1-205ENST00000398661 TARBP1Q13395 1621 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms