RNA–Protein interactions for RNA: ENST00000397885.2

PUM3-202, Transcript of pumilio RNA binding family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PUM3, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PUM3-202ENST00000397885 NISCHQ9Y2I1 1504 aa23.47■■□□□ 1.35
PUM3-202ENST00000397885 CCDC180Q9P1Z9 1646 aa21.01■□□□□ 0.95
PUM3-202ENST00000397885 ABCC9O60706 1549 aa20.7■□□□□ 0.9
PUM3-202ENST00000397885 RB1CC1Q8TDY2 1594 aa19.87■□□□□ 0.77
PUM3-202ENST00000397885 NACADO15069 1562 aa19.8■□□□□ 0.76
PUM3-202ENST00000397885 PELP1Q8IZL8 1130 aaKnown RBP19.68■□□□□ 0.74
PUM3-202ENST00000397885 DCAF8L2P0C7V8 631 aa19.68■□□□□ 0.74
PUM3-202ENST00000397885 MYO15BQ96JP2 1530 aa19.61■□□□□ 0.73
PUM3-202ENST00000397885 HRCP23327 699 aa19.5■□□□□ 0.71
PUM3-202ENST00000397885 ZCCHC6Q5VYS8 1495 aaKnown RBP19.49■□□□□ 0.71
PUM3-202ENST00000397885 DCAF1Q9Y4B6 1507 aa19.44■□□□□ 0.7
PUM3-202ENST00000397885 UNC13AQ9UPW8 1703 aa19.4■□□□□ 0.7
PUM3-202ENST00000397885 PABPN1Q86U42 306 aaKnown RBP eCLIP19.29■□□□□ 0.68
PUM3-202ENST00000397885 BICRAQ9NZM4 1560 aa19.24■□□□□ 0.67
PUM3-202ENST00000397885 DNAJC5BQ9UF47 199 aa19.18■□□□□ 0.66
PUM3-202ENST00000397885 MYT1Q01538 1121 aa19.16■□□□□ 0.66
PUM3-202ENST00000397885 SCRIBQ14160 1630 aa19.09■□□□□ 0.65
PUM3-202ENST00000397885 SHROOM4Q9ULL8 1493 aa19.07■□□□□ 0.64
PUM3-202ENST00000397885 EIF4G1Q04637 1599 aaKnown RBP18.76■□□□□ 0.59
PUM3-202ENST00000397885 PPARGC1BQ86YN6 1023 aaKnown RBP18.74■□□□□ 0.59
PUM3-202ENST00000397885 CC2D2AQ9P2K1 1620 aa18.74■□□□□ 0.59
PUM3-202ENST00000397885 PCGF6Q9BYE7 350 aa18.69■□□□□ 0.58
PUM3-202ENST00000397885 CECR2Q9BXF3 1484 aa18.64■□□□□ 0.58
PUM3-202ENST00000397885 SCAF1Q9H7N4 1312 aaKnown RBP18.54■□□□□ 0.56
PUM3-202ENST00000397885 SUPT5HO00267 1087 aaKnown RBP18.48■□□□□ 0.55
PUM3-202ENST00000397885 ZEB1P37275 1124 aaPredicted RBP18.38■□□□□ 0.53
PUM3-202ENST00000397885 CHIC1Q5VXU3 224 aa18.3■□□□□ 0.52
PUM3-202ENST00000397885 SMARCA4P51532 1647 aa18.26■□□□□ 0.51
PUM3-202ENST00000397885 NCAPD3P42695 1498 aa18.25■□□□□ 0.51
PUM3-202ENST00000397885 TRIM26Q12899 539 aaPredicted RBP18.23■□□□□ 0.51
PUM3-202ENST00000397885 BAZ1AQ9NRL2 1556 aaPredicted RBP18.22■□□□□ 0.51
PUM3-202ENST00000397885 ATAD2BQ9ULI0 1458 aa18.21■□□□□ 0.51
PUM3-202ENST00000397885 SMARCA2P51531 1590 aa18.21■□□□□ 0.5
PUM3-202ENST00000397885 TTBK1Q5TCY1 1321 aaPredicted RBP18.17■□□□□ 0.5
PUM3-202ENST00000397885 HMGXB3Q12766 1538 aa18.14■□□□□ 0.49
PUM3-202ENST00000397885 PEG3Q9GZU2 1588 aa18.1■□□□□ 0.49
PUM3-202ENST00000397885 ACIN1Q9UKV3 1341 aaKnown RBP18.08■□□□□ 0.49
PUM3-202ENST00000397885 MROH2BQ7Z745 1585 aa18.06■□□□□ 0.48
PUM3-202ENST00000397885 BAZ1BQ9UIG0 1483 aaKnown RBP18.06■□□□□ 0.48
PUM3-202ENST00000397885 ERCC6Q03468 1493 aa17.88■□□□□ 0.45
PUM3-202ENST00000397885 NEUROD1Q13562 356 aa17.88■□□□□ 0.45
PUM3-202ENST00000397885 CENPBP07199 599 aaPredicted RBP17.87■□□□□ 0.45
PUM3-202ENST00000397885 WIZO95785 1651 aa17.87■□□□□ 0.45
PUM3-202ENST00000397885 GTF3C3Q9Y5Q9 886 aa17.83■□□□□ 0.45
PUM3-202ENST00000397885 NESP48681 1621 aa17.83■□□□□ 0.44
PUM3-202ENST00000397885 LAMC3Q9Y6N6 1575 aa17.82■□□□□ 0.44
PUM3-202ENST00000397885 CUX2O14529 1486 aa17.8■□□□□ 0.44
PUM3-202ENST00000397885 RSF1Q96T23 1441 aaPredicted RBP17.78■□□□□ 0.44
PUM3-202ENST00000397885 LOC105371045A0A1W2PR82 267 aa17.71■□□□□ 0.43
PUM3-202ENST00000397885 PDS5BQ9NTI5 1447 aa17.7■□□□□ 0.42
PUM3-202ENST00000397885 CADPSQ9ULU8 1353 aa17.7■□□□□ 0.42
PUM3-202ENST00000397885 TOP2AP11388 1531 aaKnown RBP17.68■□□□□ 0.42
PUM3-202ENST00000397885 KIF21AQ7Z4S6 1674 aa17.65■□□□□ 0.42
PUM3-202ENST00000397885 THOC2Q8NI27 1593 aaKnown RBP17.65■□□□□ 0.42
PUM3-202ENST00000397885 CFTRP13569 1480 aa17.54■□□□□ 0.4
PUM3-202ENST00000397885 MRC2Q9UBG0 1479 aa17.52■□□□□ 0.4
PUM3-202ENST00000397885 DIEXFQ68CQ4 756 aaKnown RBP17.5■□□□□ 0.39
PUM3-202ENST00000397885 DNAJC5Q9H3Z4 198 aa17.5■□□□□ 0.39
PUM3-202ENST00000397885 CEP164Q9UPV0 1460 aa17.5■□□□□ 0.39
PUM3-202ENST00000397885 FANCD2Q9BXW9 1451 aa17.49■□□□□ 0.39
PUM3-202ENST00000397885 WDR62O43379 1518 aa17.47■□□□□ 0.39
PUM3-202ENST00000397885 CCDC88BA6NC98 1476 aa17.46■□□□□ 0.39
PUM3-202ENST00000397885 BCL11AQ9H165 835 aa17.45■□□□□ 0.38
PUM3-202ENST00000397885 PRDM2Q13029 1718 aa17.44■□□□□ 0.38
PUM3-202ENST00000397885 URB2Q14146 1524 aaKnown RBP17.32■□□□□ 0.36
PUM3-202ENST00000397885 ANP32EQ9BTT0 268 aa17.3■□□□□ 0.36
PUM3-202ENST00000397885 TRIM41Q8WV44 630 aa17.3■□□□□ 0.36
PUM3-202ENST00000397885 CLSPNQ9HAW4 1339 aa17.29■□□□□ 0.36
PUM3-202ENST00000397885 FAM9AQ8IZU1 332 aaPredicted RBP17.24■□□□□ 0.35
PUM3-202ENST00000397885 CCER1Q8TC90 406 aaPredicted RBP17.24■□□□□ 0.35
PUM3-202ENST00000397885 ABCC8Q09428 1581 aa17.23■□□□□ 0.35
PUM3-202ENST00000397885 TOPBP1Q92547 1522 aa17.18■□□□□ 0.34
PUM3-202ENST00000397885 DNMBPQ6XZF7 1577 aa17.16■□□□□ 0.34
PUM3-202ENST00000397885 IFT140Q96RY7 1462 aa17.16■□□□□ 0.34
PUM3-202ENST00000397885 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.15■□□□□ 0.34
PUM3-202ENST00000397885 ZNF316A6NFI3 1004 aaPredicted RBP17.14■□□□□ 0.33
PUM3-202ENST00000397885 ZNF608Q9ULD9 1512 aaPredicted RBP17.04■□□□□ 0.32
PUM3-202ENST00000397885 PRKCSHP14314 528 aaPredicted RBP17.03■□□□□ 0.32
PUM3-202ENST00000397885 OSCARQ8IYS5 282 aa17.02■□□□□ 0.32
PUM3-202ENST00000397885 TARBP1Q13395 1621 aaKnown RBP17.02■□□□□ 0.32
PUM3-202ENST00000397885 YTHDC1Q96MU7 727 aaKnown RBP17.02■□□□□ 0.31
PUM3-202ENST00000397885 POLA1P09884 1462 aaPredicted RBP17.01■□□□□ 0.31
PUM3-202ENST00000397885 EIF4G3O43432 1585 aaKnown RBP16.99■□□□□ 0.31
PUM3-202ENST00000397885 CSRNP3Q8WYN3 585 aa16.98■□□□□ 0.31
PUM3-202ENST00000397885 TSHZ2Q9NRE2 1034 aa16.98■□□□□ 0.31
PUM3-202ENST00000397885 ERICH6Q7L0X2 663 aa16.97■□□□□ 0.31
PUM3-202ENST00000397885 SOGA1O94964 1423 aa16.96■□□□□ 0.31
PUM3-202ENST00000397885 SUPT16HQ9Y5B9 1047 aaKnown RBP16.96■□□□□ 0.3
PUM3-202ENST00000397885 CUX1P39880 1505 aa16.95■□□□□ 0.3
PUM3-202ENST00000397885 MIER1Q8N108 512 aa16.95■□□□□ 0.3
PUM3-202ENST00000397885 FGD5Q6ZNL6 1462 aa16.94■□□□□ 0.3
PUM3-202ENST00000397885 AQRO60306 1485 aaKnown RBP eCLIP16.93■□□□□ 0.3
PUM3-202ENST00000397885 RAD54L2Q9Y4B4 1467 aa16.93■□□□□ 0.3
PUM3-202ENST00000397885 WDR97A6NE52 1622 aa16.93■□□□□ 0.3
PUM3-202ENST00000397885 TDRD9Q8NDG6 1382 aaKnown RBP16.86■□□□□ 0.29
PUM3-202ENST00000397885 CHD1O14646 1710 aa16.84■□□□□ 0.29
PUM3-202ENST00000397885 EHMT2Q96KQ7 1210 aa16.82■□□□□ 0.28
PUM3-202ENST00000397885 WRNQ14191 1432 aaPredicted RBP eCLIP16.81■□□□□ 0.28
PUM3-202ENST00000397885 GRIN2BQ13224 1484 aa16.79■□□□□ 0.28
PUM3-202ENST00000397885 BIVM-ERCC5R4GMW8 1640 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms