RNA–Protein interactions for RNA: ENST00000394348.2

MITF-205, Transcript of melanogenesis associated transcription factor, human

TSL 1 (best) BASIC

Gene MITF, Length 1,069 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MITF-205	ENST00000394348	AEBP2	Q6ZN18	517 aa	Predicted RBP	22.41	■■□□□ 1.18
MITF-205	ENST00000394348	CHIC1	Q5VXU3	224 aa		21.67	■■□□□ 1.06
MITF-205	ENST00000394348	NISCH	Q9Y2I1	1504 aa		20.4	■□□□□ 0.86
MITF-205	ENST00000394348	PHF23	Q9BUL5	403 aa	Predicted RBP	19.05	■□□□□ 0.64
MITF-205	ENST00000394348	SENP3	Q9H4L4	574 aa	Predicted RBP	19.03	■□□□□ 0.64
MITF-205	ENST00000394348	CCDC180	Q9P1Z9	1646 aa		17.77	■□□□□ 0.44
MITF-205	ENST00000394348	FOXD1	Q16676	465 aa		17.7	■□□□□ 0.42
MITF-205	ENST00000394348	PLPPR3	Q6T4P5	718 aa		17.51	■□□□□ 0.39
MITF-205	ENST00000394348	ZCCHC6	Q5VYS8	1495 aa	Known RBP	17.23	■□□□□ 0.35
MITF-205	ENST00000394348	DCAF1	Q9Y4B6	1507 aa		16.99	■□□□□ 0.31
MITF-205	ENST00000394348	PPP6R1	Q9UPN7	881 aa		16.88	■□□□□ 0.29
MITF-205	ENST00000394348	ADRA2B	P18089	450 aa		16.86	■□□□□ 0.29
MITF-205	ENST00000394348	MYO15B	Q96JP2	1530 aa		16.71	■□□□□ 0.27
MITF-205	ENST00000394348	PIAS4	Q8N2W9	510 aa	Predicted RBP	16.65	■□□□□ 0.26
MITF-205	ENST00000394348	SHROOM4	Q9ULL8	1493 aa		16.6	■□□□□ 0.25
MITF-205	ENST00000394348	DCAF8L2	P0C7V8	631 aa		16.49	■□□□□ 0.23
MITF-205	ENST00000394348	NACAD	O15069	1562 aa		16.46	■□□□□ 0.23
MITF-205	ENST00000394348	MSH5	O43196	834 aa		16.38	■□□□□ 0.21
MITF-205	ENST00000394348	ABCC9	O60706	1549 aa		16.35	■□□□□ 0.21
MITF-205	ENST00000394348	RB1CC1	Q8TDY2	1594 aa		16.22	■□□□□ 0.19
MITF-205	ENST00000394348	SCRIB	Q14160	1630 aa		16.21	■□□□□ 0.19
MITF-205	ENST00000394348	SUPT5H	O00267	1087 aa	Known RBP	16.1	■□□□□ 0.17
MITF-205	ENST00000394348	RSF1	Q96T23	1441 aa	Predicted RBP	15.89	■□□□□ 0.13
MITF-205	ENST00000394348	UNC13A	Q9UPW8	1703 aa		15.85	■□□□□ 0.13
MITF-205	ENST00000394348	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	15.76	■□□□□ 0.11
MITF-205	ENST00000394348	CECR2	Q9BXF3	1484 aa		15.73	■□□□□ 0.11
MITF-205	ENST00000394348	MROH2B	Q7Z745	1585 aa		15.71	■□□□□ 0.11
MITF-205	ENST00000394348	BICRA	Q9NZM4	1560 aa		15.69	■□□□□ 0.1
MITF-205	ENST00000394348	SMARCA4	P51532	1647 aa		15.64	■□□□□ 0.09
MITF-205	ENST00000394348	WIZ	O95785	1651 aa		15.59	■□□□□ 0.09
MITF-205	ENST00000394348	TOP2A	P11388	1531 aa	Known RBP	15.53	■□□□□ 0.08
MITF-205	ENST00000394348	PEG3	Q9GZU2	1588 aa		15.5	■□□□□ 0.07
MITF-205	ENST00000394348	PPP4R3CP	Q6ZMV5	832 aa		15.41	■□□□□ 0.06
MITF-205	ENST00000394348	PABPN1	Q86U42	306 aa	Known RBP eCLIP	15.39	■□□□□ 0.05
MITF-205	ENST00000394348	EIF4G1	Q04637	1599 aa	Known RBP	15.39	■□□□□ 0.05
MITF-205	ENST00000394348	SCAF1	Q9H7N4	1312 aa	Known RBP	15.38	■□□□□ 0.05
MITF-205	ENST00000394348	MAPK8IP2	Q13387	824 aa	Predicted RBP	15.36	■□□□□ 0.05
MITF-205	ENST00000394348	SMARCA2	P51531	1590 aa		15.36	■□□□□ 0.05
MITF-205	ENST00000394348	CCDC88B	A6NC98	1476 aa		15.3	■□□□□ 0.04
MITF-205	ENST00000394348	ATAD2B	Q9ULI0	1458 aa		15.29	■□□□□ 0.04
MITF-205	ENST00000394348	POTED	Q86YR6	584 aa		15.29	■□□□□ 0.04
MITF-205	ENST00000394348	BAZ1B	Q9UIG0	1483 aa	Known RBP	15.21	■□□□□ 0.03
MITF-205	ENST00000394348	TRIM41	Q8WV44	630 aa		15.2	■□□□□ 0.02
MITF-205	ENST00000394348	HMGXB3	Q12766	1538 aa		15.2	■□□□□ 0.02
MITF-205	ENST00000394348	DMRT2	Q9Y5R5	561 aa		15.16	■□□□□ 0.02
MITF-205	ENST00000394348	NCAPD3	P42695	1498 aa		15.15	■□□□□ 0.02
MITF-205	ENST00000394348	CNKSR2	Q8WXI2	1034 aa		15.01	□□□□□ -0.01
MITF-205	ENST00000394348	ABCC8	Q09428	1581 aa		15.01	□□□□□ -0.01
MITF-205	ENST00000394348	EEA1	Q15075	1411 aa		14.99	□□□□□ -0.01
MITF-205	ENST00000394348	WRN	Q14191	1432 aa	Predicted RBP eCLIP	14.95	□□□□□ -0.02
MITF-205	ENST00000394348	LOC105371045	A0A1W2PR82	267 aa		14.94	□□□□□ -0.02
MITF-205	ENST00000394348	NCBP3	Q53F19	620 aa	Known RBP	14.93	□□□□□ -0.02
MITF-205	ENST00000394348	PRDM2	Q13029	1718 aa		14.89	□□□□□ -0.03
MITF-205	ENST00000394348	CFTR	P13569	1480 aa		14.88	□□□□□ -0.03
MITF-205	ENST00000394348	CC2D2A	Q9P2K1	1620 aa		14.88	□□□□□ -0.03
MITF-205	ENST00000394348	SYNJ1	O43426	1573 aa		14.87	□□□□□ -0.03
MITF-205	ENST00000394348	KCNA4	P22459	653 aa		14.86	□□□□□ -0.03
MITF-205	ENST00000394348	TOP2B	Q02880	1626 aa		14.85	□□□□□ -0.03
MITF-205	ENST00000394348	BIVM-ERCC5	R4GMW8	1640 aa		14.85	□□□□□ -0.03
MITF-205	ENST00000394348	FAM9A	Q8IZU1	332 aa	Predicted RBP	14.81	□□□□□ -0.04
MITF-205	ENST00000394348	SOGA1	O94964	1423 aa		14.77	□□□□□ -0.04
MITF-205	ENST00000394348	RNF216	Q9NWF9	866 aa	Predicted RBP	14.76	□□□□□ -0.05
MITF-205	ENST00000394348	HOXD11	P31277	338 aa	Predicted RBP	14.75	□□□□□ -0.05
MITF-205	ENST00000394348	CADPS	Q9ULU8	1353 aa		14.74	□□□□□ -0.05
MITF-205	ENST00000394348	KIF21B	O75037	1637 aa		14.74	□□□□□ -0.05
MITF-205	ENST00000394348	NPM3	O75607	178 aa	Known RBP	14.74	□□□□□ -0.05
MITF-205	ENST00000394348	GOLGA3	Q08378	1498 aa		14.72	□□□□□ -0.05
MITF-205	ENST00000394348	CSRNP3	Q8WYN3	585 aa		14.72	□□□□□ -0.05
MITF-205	ENST00000394348	TNIK	Q9UKE5	1360 aa		14.72	□□□□□ -0.05
MITF-205	ENST00000394348	CEP164	Q9UPV0	1460 aa		14.7	□□□□□ -0.06
MITF-205	ENST00000394348	CUX1	P39880	1505 aa		14.7	□□□□□ -0.06
MITF-205	ENST00000394348	RUSC2	Q8N2Y8	1516 aa		14.68	□□□□□ -0.06
MITF-205	ENST00000394348	ERICH3	Q5RHP9	1530 aa		14.61	□□□□□ -0.07
MITF-205	ENST00000394348	LAMC3	Q9Y6N6	1575 aa		14.61	□□□□□ -0.07
MITF-205	ENST00000394348	CEP162	Q5TB80	1403 aa		14.61	□□□□□ -0.07
MITF-205	ENST00000394348	TRIM26	Q12899	539 aa	Predicted RBP	14.61	□□□□□ -0.07
MITF-205	ENST00000394348	KIF27	Q86VH2	1401 aa		14.58	□□□□□ -0.08
MITF-205	ENST00000394348	FANCD2	Q9BXW9	1451 aa		14.57	□□□□□ -0.08
MITF-205	ENST00000394348	DCAF8L1	A6NGE4	600 aa		14.56	□□□□□ -0.08
MITF-205	ENST00000394348	PCGF6	Q9BYE7	350 aa		14.56	□□□□□ -0.08
MITF-205	ENST00000394348	PRX	Q9BXM0	1461 aa		14.56	□□□□□ -0.08
MITF-205	ENST00000394348	DNMBP	Q6XZF7	1577 aa		14.54	□□□□□ -0.08
MITF-205	ENST00000394348	RAPGEF2	Q9Y4G8	1499 aa		14.5	□□□□□ -0.09
MITF-205	ENST00000394348	UBTF	P17480	764 aa	Known RBP	14.49	□□□□□ -0.09
MITF-205	ENST00000394348	FGD5	Q6ZNL6	1462 aa		14.49	□□□□□ -0.09
MITF-205	ENST00000394348	EHMT2	Q96KQ7	1210 aa		14.48	□□□□□ -0.09
MITF-205	ENST00000394348	HRC	P23327	699 aa		14.46	□□□□□ -0.09
MITF-205	ENST00000394348	PDS5B	Q9NTI5	1447 aa		14.46	□□□□□ -0.09
MITF-205	ENST00000394348	TOPBP1	Q92547	1522 aa		14.46	□□□□□ -0.1
MITF-205	ENST00000394348	CLIP1	P30622	1438 aa		14.44	□□□□□ -0.1
MITF-205	ENST00000394348	CUX2	O14529	1486 aa		14.44	□□□□□ -0.1
MITF-205	ENST00000394348	ABCA10	Q8WWZ4	1543 aa		14.43	□□□□□ -0.1
MITF-205	ENST00000394348	NES	P48681	1621 aa		14.43	□□□□□ -0.1
MITF-205	ENST00000394348	VPS8	Q8N3P4	1428 aa		14.4	□□□□□ -0.1
MITF-205	ENST00000394348	POLA1	P09884	1462 aa	Predicted RBP	14.39	□□□□□ -0.11
MITF-205	ENST00000394348	WDR97	A6NE52	1622 aa		14.38	□□□□□ -0.11
MITF-205	ENST00000394348	IGF1R	P08069	1367 aa		14.37	□□□□□ -0.11
MITF-205	ENST00000394348	URB2	Q14146	1524 aa	Known RBP	14.36	□□□□□ -0.11
MITF-205	ENST00000394348	CUL7	Q14999	1698 aa		14.35	□□□□□ -0.11
MITF-205	ENST00000394348	KIF21A	Q7Z4S6	1674 aa		14.33	□□□□□ -0.12

Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms