RNA–Protein interactions for RNA: ENST00000389212.7

RAPGEF3-201, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene RAPGEF3, Length 3,294 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-201ENST00000389212 NISCHQ9Y2I1 1504 aa24.12■■□□□ 1.45
RAPGEF3-201ENST00000389212 SHROOM4Q9ULL8 1493 aa20.88■□□□□ 0.93
RAPGEF3-201ENST00000389212 SUPT5HO00267 1087 aaKnown RBP20.44■□□□□ 0.86
RAPGEF3-201ENST00000389212 DCAF8L2P0C7V8 631 aa20.4■□□□□ 0.86
RAPGEF3-201ENST00000389212 CCDC180Q9P1Z9 1646 aa20.37■□□□□ 0.85
RAPGEF3-201ENST00000389212 ZCCHC6Q5VYS8 1495 aaKnown RBP20.37■□□□□ 0.85
RAPGEF3-201ENST00000389212 CHIC1Q5VXU3 224 aa19.71■□□□□ 0.75
RAPGEF3-201ENST00000389212 MYO15BQ96JP2 1530 aa19.65■□□□□ 0.74
RAPGEF3-201ENST00000389212 DCAF1Q9Y4B6 1507 aa19.62■□□□□ 0.73
RAPGEF3-201ENST00000389212 SCRIBQ14160 1630 aa19.35■□□□□ 0.69
RAPGEF3-201ENST00000389212 LOC105371045A0A1W2PR82 267 aa19.26■□□□□ 0.67
RAPGEF3-201ENST00000389212 PELP1Q8IZL8 1130 aaKnown RBP19.24■□□□□ 0.67
RAPGEF3-201ENST00000389212 ABCC9O60706 1549 aa19.24■□□□□ 0.67
RAPGEF3-201ENST00000389212 PCGF6Q9BYE7 350 aa19.17■□□□□ 0.66
RAPGEF3-201ENST00000389212 RSF1Q96T23 1441 aaPredicted RBP19.14■□□□□ 0.65
RAPGEF3-201ENST00000389212 HRCP23327 699 aa19■□□□□ 0.63
RAPGEF3-201ENST00000389212 RB1CC1Q8TDY2 1594 aa18.97■□□□□ 0.63
RAPGEF3-201ENST00000389212 CECR2Q9BXF3 1484 aa18.96■□□□□ 0.63
RAPGEF3-201ENST00000389212 FAM9AQ8IZU1 332 aaPredicted RBP18.95■□□□□ 0.62
RAPGEF3-201ENST00000389212 EHMT2Q96KQ7 1210 aa18.93■□□□□ 0.62
RAPGEF3-201ENST00000389212 TRIM41Q8WV44 630 aa18.92■□□□□ 0.62
RAPGEF3-201ENST00000389212 NACADO15069 1562 aa18.91■□□□□ 0.62
RAPGEF3-201ENST00000389212 MROH2BQ7Z745 1585 aa18.84■□□□□ 0.61
RAPGEF3-201ENST00000389212 PPARGC1BQ86YN6 1023 aaKnown RBP18.83■□□□□ 0.6
RAPGEF3-201ENST00000389212 WIZO95785 1651 aa18.73■□□□□ 0.59
RAPGEF3-201ENST00000389212 MYT1Q01538 1121 aa18.71■□□□□ 0.59
RAPGEF3-201ENST00000389212 TRIM26Q12899 539 aaPredicted RBP18.66■□□□□ 0.58
RAPGEF3-201ENST00000389212 PABPN1Q86U42 306 aaKnown RBP eCLIP18.5■□□□□ 0.55
RAPGEF3-201ENST00000389212 BAZ1AQ9NRL2 1556 aaPredicted RBP18.5■□□□□ 0.55
RAPGEF3-201ENST00000389212 UNC13AQ9UPW8 1703 aa18.4■□□□□ 0.54
RAPGEF3-201ENST00000389212 SMARCA4P51532 1647 aa18.38■□□□□ 0.53
RAPGEF3-201ENST00000389212 ABCC8Q09428 1581 aa18.37■□□□□ 0.53
RAPGEF3-201ENST00000389212 CCDC88BA6NC98 1476 aa18.35■□□□□ 0.53
RAPGEF3-201ENST00000389212 TOP2AP11388 1531 aaKnown RBP18.33■□□□□ 0.53
RAPGEF3-201ENST00000389212 EIF4G1Q04637 1599 aaKnown RBP18.33■□□□□ 0.53
RAPGEF3-201ENST00000389212 TTBK1Q5TCY1 1321 aaPredicted RBP18.28■□□□□ 0.52
RAPGEF3-201ENST00000389212 SMARCA2P51531 1590 aa18.27■□□□□ 0.52
RAPGEF3-201ENST00000389212 SCAF1Q9H7N4 1312 aaKnown RBP18.21■□□□□ 0.51
RAPGEF3-201ENST00000389212 BICRAQ9NZM4 1560 aa18.19■□□□□ 0.5
RAPGEF3-201ENST00000389212 SOGA1O94964 1423 aa18.19■□□□□ 0.5
RAPGEF3-201ENST00000389212 RUSC2Q8N2Y8 1516 aa18.13■□□□□ 0.49
RAPGEF3-201ENST00000389212 ZEB1P37275 1124 aaPredicted RBP18.12■□□□□ 0.49
RAPGEF3-201ENST00000389212 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.09■□□□□ 0.49
RAPGEF3-201ENST00000389212 UBTFP17480 764 aaKnown RBP18.09■□□□□ 0.49
RAPGEF3-201ENST00000389212 CSRNP3Q8WYN3 585 aa18.05■□□□□ 0.48
RAPGEF3-201ENST00000389212 CEP162Q5TB80 1403 aa18.04■□□□□ 0.48
RAPGEF3-201ENST00000389212 WRNQ14191 1432 aaPredicted RBP eCLIP17.98■□□□□ 0.47
RAPGEF3-201ENST00000389212 CCER1Q8TC90 406 aaPredicted RBP17.98■□□□□ 0.47
RAPGEF3-201ENST00000389212 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
RAPGEF3-201ENST00000389212 TNIKQ9UKE5 1360 aa17.94■□□□□ 0.46
RAPGEF3-201ENST00000389212 RANGAP1P46060 587 aaPredicted RBP17.93■□□□□ 0.46
RAPGEF3-201ENST00000389212 BAZ1BQ9UIG0 1483 aaKnown RBP17.92■□□□□ 0.46
RAPGEF3-201ENST00000389212 PEG3Q9GZU2 1588 aa17.91■□□□□ 0.46
RAPGEF3-201ENST00000389212 SYNJ1O43426 1573 aa17.9■□□□□ 0.46
RAPGEF3-201ENST00000389212 EEA1Q15075 1411 aa17.87■□□□□ 0.45
RAPGEF3-201ENST00000389212 GOLGA3Q08378 1498 aa17.85■□□□□ 0.45
RAPGEF3-201ENST00000389212 CEP164Q9UPV0 1460 aa17.74■□□□□ 0.43
RAPGEF3-201ENST00000389212 RAPGEF2Q9Y4G8 1499 aa17.72■□□□□ 0.43
RAPGEF3-201ENST00000389212 HNRNPUL2Q1KMD3 747 aaKnown RBP17.72■□□□□ 0.43
RAPGEF3-201ENST00000389212 CLIP1P30622 1438 aa17.71■□□□□ 0.43
RAPGEF3-201ENST00000389212 BCL11AQ9H165 835 aa17.67■□□□□ 0.42
RAPGEF3-201ENST00000389212 KIF21BO75037 1637 aa17.65■□□□□ 0.42
RAPGEF3-201ENST00000389212 GTF3C3Q9Y5Q9 886 aa17.64■□□□□ 0.41
RAPGEF3-201ENST00000389212 APLP2Q06481 763 aa17.61■□□□□ 0.41
RAPGEF3-201ENST00000389212 TOP2BQ02880 1626 aa17.59■□□□□ 0.41
RAPGEF3-201ENST00000389212 VPS8Q8N3P4 1428 aa17.58■□□□□ 0.4
RAPGEF3-201ENST00000389212 PRKCSHP14314 528 aaPredicted RBP17.57■□□□□ 0.4
RAPGEF3-201ENST00000389212 DIEXFQ68CQ4 756 aaKnown RBP17.56■□□□□ 0.4
RAPGEF3-201ENST00000389212 NCAPD3P42695 1498 aa17.54■□□□□ 0.4
RAPGEF3-201ENST00000389212 CUX1P39880 1505 aa17.51■□□□□ 0.39
RAPGEF3-201ENST00000389212 NEUROD1Q13562 356 aa17.5■□□□□ 0.39
RAPGEF3-201ENST00000389212 HMGXB3Q12766 1538 aa17.49■□□□□ 0.39
RAPGEF3-201ENST00000389212 CENPBP07199 599 aaPredicted RBP17.49■□□□□ 0.39
RAPGEF3-201ENST00000389212 BIVM-ERCC5R4GMW8 1640 aa17.49■□□□□ 0.39
RAPGEF3-201ENST00000389212 ACIN1Q9UKV3 1341 aaKnown RBP17.49■□□□□ 0.39
RAPGEF3-201ENST00000389212 PRXQ9BXM0 1461 aa17.44■□□□□ 0.38
RAPGEF3-201ENST00000389212 KANK4Q5T7N3 995 aaPredicted RBP17.44■□□□□ 0.38
RAPGEF3-201ENST00000389212 CFTRP13569 1480 aa17.42■□□□□ 0.38
RAPGEF3-201ENST00000389212 KIF27Q86VH2 1401 aa17.41■□□□□ 0.38
RAPGEF3-201ENST00000389212 ARAP1Q96P48 1450 aa17.41■□□□□ 0.38
RAPGEF3-201ENST00000389212 ZNF316A6NFI3 1004 aaPredicted RBP17.39■□□□□ 0.38
RAPGEF3-201ENST00000389212 ERICH3Q5RHP9 1530 aa17.36■□□□□ 0.37
RAPGEF3-201ENST00000389212 CUX2O14529 1486 aa17.32■□□□□ 0.36
RAPGEF3-201ENST00000389212 ITGAEP38570 1179 aa17.32■□□□□ 0.36
RAPGEF3-201ENST00000389212 YTHDC1Q96MU7 727 aaKnown RBP17.31■□□□□ 0.36
RAPGEF3-201ENST00000389212 CADPSQ9ULU8 1353 aa17.28■□□□□ 0.36
RAPGEF3-201ENST00000389212 ARHGAP35Q9NRY4 1499 aa17.27■□□□□ 0.35
RAPGEF3-201ENST00000389212 IGF1RP08069 1367 aa17.26■□□□□ 0.35
RAPGEF3-201ENST00000389212 P3H3Q8IVL6 736 aa17.25■□□□□ 0.35
RAPGEF3-201ENST00000389212 MIER1Q8N108 512 aa17.23■□□□□ 0.35
RAPGEF3-201ENST00000389212 FGD5Q6ZNL6 1462 aa17.23■□□□□ 0.35
RAPGEF3-201ENST00000389212 ATP1B4Q9UN42 357 aaPredicted RBP17.21■□□□□ 0.35
RAPGEF3-201ENST00000389212 CC2D2AQ9P2K1 1620 aa17.2■□□□□ 0.34
RAPGEF3-201ENST00000389212 CARMIL1Q5VZK9 1371 aa17.2■□□□□ 0.34
RAPGEF3-201ENST00000389212 DHX57Q6P158 1386 aaKnown RBP17.19■□□□□ 0.34
RAPGEF3-201ENST00000389212 PRDM2Q13029 1718 aa17.14■□□□□ 0.33
RAPGEF3-201ENST00000389212 ERICH6Q7L0X2 663 aa17.14■□□□□ 0.33
RAPGEF3-201ENST00000389212 NESP48681 1621 aa17.14■□□□□ 0.33
RAPGEF3-201ENST00000389212 FANCD2Q9BXW9 1451 aa17.14■□□□□ 0.33
RAPGEF3-201ENST00000389212 RAD54L2Q9Y4B4 1467 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms