RNA–Protein interactions for RNA: ENST00000372998.1

LCN2-202, Transcript of lipocalin 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LCN2, Length 631 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LCN2-202ENST00000372998 NISCHQ9Y2I1 1504 aa22.36■■□□□ 1.17
LCN2-202ENST00000372998 CCDC180Q9P1Z9 1646 aa19.25■□□□□ 0.67
LCN2-202ENST00000372998 ZCCHC6Q5VYS8 1495 aaKnown RBP18.94■□□□□ 0.62
LCN2-202ENST00000372998 DCAF1Q9Y4B6 1507 aa18.62■□□□□ 0.57
LCN2-202ENST00000372998 SHROOM4Q9ULL8 1493 aa18.6■□□□□ 0.57
LCN2-202ENST00000372998 SUPT5HO00267 1087 aaKnown RBP18.38■□□□□ 0.53
LCN2-202ENST00000372998 MYO15BQ96JP2 1530 aa18.1■□□□□ 0.49
LCN2-202ENST00000372998 CHIC1Q5VXU3 224 aa18.08■□□□□ 0.48
LCN2-202ENST00000372998 DCAF8L2P0C7V8 631 aa18.06■□□□□ 0.48
LCN2-202ENST00000372998 ABCC9O60706 1549 aa17.92■□□□□ 0.46
LCN2-202ENST00000372998 HRCP23327 699 aa17.76■□□□□ 0.43
LCN2-202ENST00000372998 NACADO15069 1562 aa17.71■□□□□ 0.43
LCN2-202ENST00000372998 RB1CC1Q8TDY2 1594 aa17.62■□□□□ 0.41
LCN2-202ENST00000372998 SCRIBQ14160 1630 aa17.62■□□□□ 0.41
LCN2-202ENST00000372998 RSF1Q96T23 1441 aaPredicted RBP17.6■□□□□ 0.41
LCN2-202ENST00000372998 PCGF6Q9BYE7 350 aa17.49■□□□□ 0.39
LCN2-202ENST00000372998 TRIM26Q12899 539 aaPredicted RBP17.44■□□□□ 0.38
LCN2-202ENST00000372998 ZEB1P37275 1124 aaPredicted RBP17.37■□□□□ 0.37
LCN2-202ENST00000372998 TRIM41Q8WV44 630 aa17.34■□□□□ 0.37
LCN2-202ENST00000372998 LOC105371045A0A1W2PR82 267 aa17.3■□□□□ 0.36
LCN2-202ENST00000372998 BAZ1AQ9NRL2 1556 aaPredicted RBP17.27■□□□□ 0.35
LCN2-202ENST00000372998 MROH2BQ7Z745 1585 aa17.21■□□□□ 0.35
LCN2-202ENST00000372998 CECR2Q9BXF3 1484 aa17.15■□□□□ 0.34
LCN2-202ENST00000372998 WIZO95785 1651 aa17.15■□□□□ 0.34
LCN2-202ENST00000372998 TOP2AP11388 1531 aaKnown RBP17.08■□□□□ 0.32
LCN2-202ENST00000372998 EIF4G1Q04637 1599 aaKnown RBP17.07■□□□□ 0.32
LCN2-202ENST00000372998 SMARCA4P51532 1647 aa17.02■□□□□ 0.31
LCN2-202ENST00000372998 EEA1Q15075 1411 aa16.97■□□□□ 0.31
LCN2-202ENST00000372998 UNC13AQ9UPW8 1703 aa16.94■□□□□ 0.3
LCN2-202ENST00000372998 PPARGC1BQ86YN6 1023 aaKnown RBP16.94■□□□□ 0.3
LCN2-202ENST00000372998 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
LCN2-202ENST00000372998 SMARCA2P51531 1590 aa16.89■□□□□ 0.29
LCN2-202ENST00000372998 WRNQ14191 1432 aaPredicted RBP eCLIP16.86■□□□□ 0.29
LCN2-202ENST00000372998 CCDC88BA6NC98 1476 aa16.83■□□□□ 0.28
LCN2-202ENST00000372998 PEG3Q9GZU2 1588 aa16.83■□□□□ 0.28
LCN2-202ENST00000372998 TNIKQ9UKE5 1360 aa16.77■□□□□ 0.27
LCN2-202ENST00000372998 ABCC8Q09428 1581 aa16.68■□□□□ 0.26
LCN2-202ENST00000372998 GOLGA3Q08378 1498 aa16.67■□□□□ 0.26
LCN2-202ENST00000372998 CEP162Q5TB80 1403 aa16.66■□□□□ 0.26
LCN2-202ENST00000372998 BICRAQ9NZM4 1560 aa16.66■□□□□ 0.26
LCN2-202ENST00000372998 PELP1Q8IZL8 1130 aaKnown RBP16.64■□□□□ 0.25
LCN2-202ENST00000372998 CSRNP3Q8WYN3 585 aa16.63■□□□□ 0.25
LCN2-202ENST00000372998 KIF21BO75037 1637 aa16.62■□□□□ 0.25
LCN2-202ENST00000372998 CEP164Q9UPV0 1460 aa16.6■□□□□ 0.25
LCN2-202ENST00000372998 CCER1Q8TC90 406 aaPredicted RBP16.58■□□□□ 0.24
LCN2-202ENST00000372998 BAZ1BQ9UIG0 1483 aaKnown RBP16.56■□□□□ 0.24
LCN2-202ENST00000372998 SOGA1O94964 1423 aa16.53■□□□□ 0.24
LCN2-202ENST00000372998 EHMT2Q96KQ7 1210 aa16.51■□□□□ 0.23
LCN2-202ENST00000372998 ATAD2BQ9ULI0 1458 aa16.49■□□□□ 0.23
LCN2-202ENST00000372998 UBTFP17480 764 aaKnown RBP16.48■□□□□ 0.23
LCN2-202ENST00000372998 SYNJ1O43426 1573 aa16.43■□□□□ 0.22
LCN2-202ENST00000372998 TOP2BQ02880 1626 aa16.41■□□□□ 0.22
LCN2-202ENST00000372998 BIVM-ERCC5R4GMW8 1640 aa16.41■□□□□ 0.22
LCN2-202ENST00000372998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.39■□□□□ 0.21
LCN2-202ENST00000372998 CENPBP07199 599 aaPredicted RBP16.38■□□□□ 0.21
LCN2-202ENST00000372998 RUSC2Q8N2Y8 1516 aa16.38■□□□□ 0.21
LCN2-202ENST00000372998 CLIP1P30622 1438 aa16.37■□□□□ 0.21
LCN2-202ENST00000372998 VPS8Q8N3P4 1428 aa16.37■□□□□ 0.21
LCN2-202ENST00000372998 ERICH3Q5RHP9 1530 aa16.37■□□□□ 0.21
LCN2-202ENST00000372998 HMGXB3Q12766 1538 aa16.36■□□□□ 0.21
LCN2-202ENST00000372998 APLP2Q06481 763 aa16.35■□□□□ 0.21
LCN2-202ENST00000372998 PABPN1Q86U42 306 aaKnown RBP eCLIP16.33■□□□□ 0.2
LCN2-202ENST00000372998 DIEXFQ68CQ4 756 aaKnown RBP16.31■□□□□ 0.2
LCN2-202ENST00000372998 CLSPNQ9HAW4 1339 aa16.27■□□□□ 0.2
LCN2-202ENST00000372998 NCAPD3P42695 1498 aa16.27■□□□□ 0.19
LCN2-202ENST00000372998 ACIN1Q9UKV3 1341 aaKnown RBP16.26■□□□□ 0.19
LCN2-202ENST00000372998 ZNF316A6NFI3 1004 aaPredicted RBP16.25■□□□□ 0.19
LCN2-202ENST00000372998 PRDM2Q13029 1718 aa16.25■□□□□ 0.19
LCN2-202ENST00000372998 SCAF1Q9H7N4 1312 aaKnown RBP16.21■□□□□ 0.19
LCN2-202ENST00000372998 PRXQ9BXM0 1461 aa16.2■□□□□ 0.18
LCN2-202ENST00000372998 RAPGEF2Q9Y4G8 1499 aa16.2■□□□□ 0.18
LCN2-202ENST00000372998 KIF27Q86VH2 1401 aa16.16■□□□□ 0.18
LCN2-202ENST00000372998 CFTRP13569 1480 aa16.11■□□□□ 0.17
LCN2-202ENST00000372998 TTBK1Q5TCY1 1321 aaPredicted RBP16.07■□□□□ 0.16
LCN2-202ENST00000372998 CUX1P39880 1505 aa16.07■□□□□ 0.16
LCN2-202ENST00000372998 MAP3K1Q13233 1512 aa16.06■□□□□ 0.16
LCN2-202ENST00000372998 ARAP1Q96P48 1450 aa16.04■□□□□ 0.16
LCN2-202ENST00000372998 HNRNPUL2Q1KMD3 747 aaKnown RBP16.03■□□□□ 0.16
LCN2-202ENST00000372998 RRBP1Q9P2E9 1410 aaKnown RBP16.02■□□□□ 0.16
LCN2-202ENST00000372998 NEUROD1Q13562 356 aa16.02■□□□□ 0.16
LCN2-202ENST00000372998 CUX2O14529 1486 aa16.02■□□□□ 0.15
LCN2-202ENST00000372998 MYT1Q01538 1121 aa15.99■□□□□ 0.15
LCN2-202ENST00000372998 GTF3C3Q9Y5Q9 886 aa15.95■□□□□ 0.14
LCN2-202ENST00000372998 DHX57Q6P158 1386 aaKnown RBP15.91■□□□□ 0.14
LCN2-202ENST00000372998 ARHGAP35Q9NRY4 1499 aa15.91■□□□□ 0.14
LCN2-202ENST00000372998 FHAD1B1AJZ9 1412 aa15.9■□□□□ 0.14
LCN2-202ENST00000372998 CCNB3Q8WWL7 1395 aa15.89■□□□□ 0.13
LCN2-202ENST00000372998 CADPSQ9ULU8 1353 aa15.88■□□□□ 0.13
LCN2-202ENST00000372998 TIAM1Q13009 1591 aa15.87■□□□□ 0.13
LCN2-202ENST00000372998 EFCAB5A4FU69 1503 aa15.84■□□□□ 0.13
LCN2-202ENST00000372998 CFAP43Q8NDM7 1665 aa15.83■□□□□ 0.13
LCN2-202ENST00000372998 CC2D2AQ9P2K1 1620 aa15.83■□□□□ 0.12
LCN2-202ENST00000372998 IGF1RP08069 1367 aa15.82■□□□□ 0.12
LCN2-202ENST00000372998 CUL7Q14999 1698 aa15.81■□□□□ 0.12
LCN2-202ENST00000372998 CARMIL1Q5VZK9 1371 aa15.81■□□□□ 0.12
LCN2-202ENST00000372998 MIER1Q8N108 512 aa15.8■□□□□ 0.12
LCN2-202ENST00000372998 TIMELESSQ9UNS1 1208 aa15.8■□□□□ 0.12
LCN2-202ENST00000372998 AQRO60306 1485 aaKnown RBP eCLIP15.78■□□□□ 0.12
LCN2-202ENST00000372998 FGD5Q6ZNL6 1462 aa15.78■□□□□ 0.12
LCN2-202ENST00000372998 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms