RNA–Protein interactions for RNA: ENST00000357164.3

GM2A-201, Transcript of GM2 ganglioside activator, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GM2A, Length 3,896 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GM2A-201ENST00000357164 NISCHQ9Y2I1 1504 aa16.72■□□□□ 0.27
GM2A-201ENST00000357164 HRCP23327 699 aa14.84□□□□□ -0.03
GM2A-201ENST00000357164 MYO15BQ96JP2 1530 aa14.78□□□□□ -0.04
GM2A-201ENST00000357164 DCAF1Q9Y4B6 1507 aa14.46□□□□□ -0.1
GM2A-201ENST00000357164 CCDC180Q9P1Z9 1646 aa14.42□□□□□ -0.1
GM2A-201ENST00000357164 ZCCHC6Q5VYS8 1495 aaKnown RBP14.37□□□□□ -0.11
GM2A-201ENST00000357164 PELP1Q8IZL8 1130 aaKnown RBP14.34□□□□□ -0.11
GM2A-201ENST00000357164 PPARGC1BQ86YN6 1023 aaKnown RBP14.31□□□□□ -0.12
GM2A-201ENST00000357164 CHIC1Q5VXU3 224 aa14.24□□□□□ -0.13
GM2A-201ENST00000357164 PCGF6Q9BYE7 350 aa14.12□□□□□ -0.15
GM2A-201ENST00000357164 SCAF1Q9H7N4 1312 aaKnown RBP14.09□□□□□ -0.15
GM2A-201ENST00000357164 SHROOM4Q9ULL8 1493 aa14.07□□□□□ -0.16
GM2A-201ENST00000357164 SUPT5HO00267 1087 aaKnown RBP13.93□□□□□ -0.18
GM2A-201ENST00000357164 TRIM26Q12899 539 aaPredicted RBP13.87□□□□□ -0.19
GM2A-201ENST00000357164 MYT1Q01538 1121 aa13.79□□□□□ -0.2
GM2A-201ENST00000357164 ZEB1P37275 1124 aaPredicted RBP13.74□□□□□ -0.21
GM2A-201ENST00000357164 ABCC9O60706 1549 aa13.74□□□□□ -0.21
GM2A-201ENST00000357164 LOC105371045A0A1W2PR82 267 aa13.69□□□□□ -0.22
GM2A-201ENST00000357164 ACIN1Q9UKV3 1341 aaKnown RBP13.63□□□□□ -0.23
GM2A-201ENST00000357164 NEUROD1Q13562 356 aa13.57□□□□□ -0.24
GM2A-201ENST00000357164 EIF4G1Q04637 1599 aaKnown RBP13.53□□□□□ -0.24
GM2A-201ENST00000357164 RB1CC1Q8TDY2 1594 aa13.45□□□□□ -0.26
GM2A-201ENST00000357164 RSF1Q96T23 1441 aaPredicted RBP13.38□□□□□ -0.27
GM2A-201ENST00000357164 DCAF8L2P0C7V8 631 aa13.37□□□□□ -0.27
GM2A-201ENST00000357164 GTF3C3Q9Y5Q9 886 aa13.36□□□□□ -0.27
GM2A-201ENST00000357164 TRIM41Q8WV44 630 aa13.35□□□□□ -0.27
GM2A-201ENST00000357164 EHMT2Q96KQ7 1210 aa13.34□□□□□ -0.27
GM2A-201ENST00000357164 WRNQ14191 1432 aaPredicted RBP eCLIP13.32□□□□□ -0.28
GM2A-201ENST00000357164 DIEXFQ68CQ4 756 aaKnown RBP13.18□□□□□ -0.3
GM2A-201ENST00000357164 AEBP2Q6ZN18 517 aaPredicted RBP13.15□□□□□ -0.3
GM2A-201ENST00000357164 CENPBP07199 599 aaPredicted RBP13.13□□□□□ -0.31
GM2A-201ENST00000357164 TTBK1Q5TCY1 1321 aaPredicted RBP13.13□□□□□ -0.31
GM2A-201ENST00000357164 NACADO15069 1562 aa13.12□□□□□ -0.31
GM2A-201ENST00000357164 BAZ1AQ9NRL2 1556 aaPredicted RBP13.1□□□□□ -0.31
GM2A-201ENST00000357164 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.06□□□□□ -0.32
GM2A-201ENST00000357164 WIZO95785 1651 aa13.04□□□□□ -0.32
GM2A-201ENST00000357164 SCRIBQ14160 1630 aa13.03□□□□□ -0.32
GM2A-201ENST00000357164 MROH2BQ7Z745 1585 aa13.01□□□□□ -0.33
GM2A-201ENST00000357164 ZNF316A6NFI3 1004 aaPredicted RBP12.99□□□□□ -0.33
GM2A-201ENST00000357164 CLSPNQ9HAW4 1339 aa12.93□□□□□ -0.34
GM2A-201ENST00000357164 MIER1Q8N108 512 aa12.92□□□□□ -0.34
GM2A-201ENST00000357164 CECR2Q9BXF3 1484 aa12.91□□□□□ -0.34
GM2A-201ENST00000357164 CEP162Q5TB80 1403 aa12.91□□□□□ -0.34
GM2A-201ENST00000357164 CCER1Q8TC90 406 aaPredicted RBP12.91□□□□□ -0.34
GM2A-201ENST00000357164 FAM9AQ8IZU1 332 aaPredicted RBP12.9□□□□□ -0.34
GM2A-201ENST00000357164 BCL11AQ9H165 835 aa12.9□□□□□ -0.34
GM2A-201ENST00000357164 ABCC8Q09428 1581 aa12.89□□□□□ -0.35
GM2A-201ENST00000357164 TNIKQ9UKE5 1360 aa12.89□□□□□ -0.35
GM2A-201ENST00000357164 ANP32EQ9BTT0 268 aa12.88□□□□□ -0.35
GM2A-201ENST00000357164 TSHZ2Q9NRE2 1034 aa12.88□□□□□ -0.35
GM2A-201ENST00000357164 SUPT16HQ9Y5B9 1047 aaKnown RBP12.87□□□□□ -0.35
GM2A-201ENST00000357164 CCDC88BA6NC98 1476 aa12.86□□□□□ -0.35
GM2A-201ENST00000357164 KIF21BO75037 1637 aa12.85□□□□□ -0.35
GM2A-201ENST00000357164 SMARCA2P51531 1590 aa12.83□□□□□ -0.36
GM2A-201ENST00000357164 TOP2AP11388 1531 aaKnown RBP12.82□□□□□ -0.36
GM2A-201ENST00000357164 CUX2O14529 1486 aa12.79□□□□□ -0.36
GM2A-201ENST00000357164 EEA1Q15075 1411 aa12.77□□□□□ -0.37
GM2A-201ENST00000357164 SOGA1O94964 1423 aa12.73□□□□□ -0.37
GM2A-201ENST00000357164 RUSC2Q8N2Y8 1516 aa12.73□□□□□ -0.37
GM2A-201ENST00000357164 CSRNP3Q8WYN3 585 aa12.72□□□□□ -0.37
GM2A-201ENST00000357164 SMARCA4P51532 1647 aa12.68□□□□□ -0.38
GM2A-201ENST00000357164 YTHDC1Q96MU7 727 aaKnown RBP12.68□□□□□ -0.38
GM2A-201ENST00000357164 GOLGA3Q08378 1498 aa12.67□□□□□ -0.38
GM2A-201ENST00000357164 UNC13AQ9UPW8 1703 aa12.65□□□□□ -0.38
GM2A-201ENST00000357164 DHX57Q6P158 1386 aaKnown RBP12.65□□□□□ -0.38
GM2A-201ENST00000357164 BAZ1BQ9UIG0 1483 aaKnown RBP12.65□□□□□ -0.38
GM2A-201ENST00000357164 SYNJ1O43426 1573 aa12.63□□□□□ -0.39
GM2A-201ENST00000357164 CLIP1P30622 1438 aa12.61□□□□□ -0.39
GM2A-201ENST00000357164 VPS8Q8N3P4 1428 aa12.61□□□□□ -0.39
GM2A-201ENST00000357164 PEG3Q9GZU2 1588 aa12.61□□□□□ -0.39
GM2A-201ENST00000357164 MAPKBP1O60336 1514 aa12.59□□□□□ -0.39
GM2A-201ENST00000357164 RRBP1Q9P2E9 1410 aaKnown RBP12.56□□□□□ -0.4
GM2A-201ENST00000357164 CEP164Q9UPV0 1460 aa12.55□□□□□ -0.4
GM2A-201ENST00000357164 MSH5O43196 834 aa12.55□□□□□ -0.4
GM2A-201ENST00000357164 PRKCSHP14314 528 aaPredicted RBP12.53□□□□□ -0.4
GM2A-201ENST00000357164 BIVM-ERCC5R4GMW8 1640 aa12.5□□□□□ -0.41
GM2A-201ENST00000357164 ARAP1Q96P48 1450 aa12.49□□□□□ -0.41
GM2A-201ENST00000357164 ERICH3Q5RHP9 1530 aa12.48□□□□□ -0.41
GM2A-201ENST00000357164 RBM19Q9Y4C8 960 aaKnown RBP12.46□□□□□ -0.42
GM2A-201ENST00000357164 FANCIQ9NVI1 1328 aa12.43□□□□□ -0.42
GM2A-201ENST00000357164 RAPGEF2Q9Y4G8 1499 aa12.43□□□□□ -0.42
GM2A-201ENST00000357164 TOP2BQ02880 1626 aa12.43□□□□□ -0.42
GM2A-201ENST00000357164 KCNH8Q96L42 1107 aa12.42□□□□□ -0.42
GM2A-201ENST00000357164 WDR97A6NE52 1622 aa12.41□□□□□ -0.42
GM2A-201ENST00000357164 PRXQ9BXM0 1461 aa12.38□□□□□ -0.43
GM2A-201ENST00000357164 KDM5BQ9UGL1 1544 aa12.38□□□□□ -0.43
GM2A-201ENST00000357164 MAP3K1Q13233 1512 aa12.37□□□□□ -0.43
GM2A-201ENST00000357164 PPP1R15AO75807 674 aaPredicted RBP12.35□□□□□ -0.43
GM2A-201ENST00000357164 CFAP43Q8NDM7 1665 aa12.34□□□□□ -0.43
GM2A-201ENST00000357164 POLR1AO95602 1720 aaPredicted RBP12.31□□□□□ -0.44
GM2A-201ENST00000357164 APLP2Q06481 763 aa12.31□□□□□ -0.44
GM2A-201ENST00000357164 RANGAP1P46060 587 aaPredicted RBP12.3□□□□□ -0.44
GM2A-201ENST00000357164 NCAPD3P42695 1498 aa12.3□□□□□ -0.44
GM2A-201ENST00000357164 HNRNPUL2Q1KMD3 747 aaKnown RBP12.29□□□□□ -0.44
GM2A-201ENST00000357164 BICRAQ9NZM4 1560 aa12.27□□□□□ -0.45
GM2A-201ENST00000357164 TIAM1Q13009 1591 aa12.26□□□□□ -0.45
GM2A-201ENST00000357164 CCER2I3L3R5 266 aa12.25□□□□□ -0.45
GM2A-201ENST00000357164 FKBP8Q14318 412 aa12.23□□□□□ -0.45
GM2A-201ENST00000357164 ABCA5Q8WWZ7 1642 aa12.21□□□□□ -0.45
GM2A-201ENST00000357164 ARHGAP35Q9NRY4 1499 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms