RNA–Protein interactions for RNA: ENST00000348749.9

CHRNA1-202, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRNA1, Length 1,984 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-202ENST00000348749 NISCHQ9Y2I1 1504 aa20.48■□□□□ 0.87
CHRNA1-202ENST00000348749 HRCP23327 699 aa17.48■□□□□ 0.39
CHRNA1-202ENST00000348749 CCDC180Q9P1Z9 1646 aa17.47■□□□□ 0.39
CHRNA1-202ENST00000348749 ZCCHC6Q5VYS8 1495 aaKnown RBP17.4■□□□□ 0.38
CHRNA1-202ENST00000348749 SHROOM4Q9ULL8 1493 aa17.26■□□□□ 0.35
CHRNA1-202ENST00000348749 PELP1Q8IZL8 1130 aaKnown RBP17.11■□□□□ 0.33
CHRNA1-202ENST00000348749 SUPT5HO00267 1087 aaKnown RBP17.08■□□□□ 0.32
CHRNA1-202ENST00000348749 DCAF1Q9Y4B6 1507 aa16.99■□□□□ 0.31
CHRNA1-202ENST00000348749 MYO15BQ96JP2 1530 aa16.95■□□□□ 0.3
CHRNA1-202ENST00000348749 PCGF6Q9BYE7 350 aa16.91■□□□□ 0.3
CHRNA1-202ENST00000348749 PPARGC1BQ86YN6 1023 aaKnown RBP16.9■□□□□ 0.3
CHRNA1-202ENST00000348749 CHIC1Q5VXU3 224 aa16.88■□□□□ 0.29
CHRNA1-202ENST00000348749 MYT1Q01538 1121 aa16.54■□□□□ 0.24
CHRNA1-202ENST00000348749 DCAF8L2P0C7V8 631 aa16.53■□□□□ 0.24
CHRNA1-202ENST00000348749 TRIM26Q12899 539 aaPredicted RBP16.51■□□□□ 0.23
CHRNA1-202ENST00000348749 SCAF1Q9H7N4 1312 aaKnown RBP16.51■□□□□ 0.23
CHRNA1-202ENST00000348749 ZEB1P37275 1124 aaPredicted RBP16.49■□□□□ 0.23
CHRNA1-202ENST00000348749 ABCC9O60706 1549 aa16.47■□□□□ 0.23
CHRNA1-202ENST00000348749 LOC105371045A0A1W2PR82 267 aa16.28■□□□□ 0.2
CHRNA1-202ENST00000348749 RSF1Q96T23 1441 aaPredicted RBP16.23■□□□□ 0.19
CHRNA1-202ENST00000348749 RB1CC1Q8TDY2 1594 aa16.2■□□□□ 0.18
CHRNA1-202ENST00000348749 ACIN1Q9UKV3 1341 aaKnown RBP16.13■□□□□ 0.17
CHRNA1-202ENST00000348749 SCRIBQ14160 1630 aa16.13■□□□□ 0.17
CHRNA1-202ENST00000348749 NACADO15069 1562 aa16.05■□□□□ 0.16
CHRNA1-202ENST00000348749 TRIM41Q8WV44 630 aa16.02■□□□□ 0.16
CHRNA1-202ENST00000348749 NEUROD1Q13562 356 aa16.01■□□□□ 0.15
CHRNA1-202ENST00000348749 CENPBP07199 599 aaPredicted RBP15.93■□□□□ 0.14
CHRNA1-202ENST00000348749 GTF3C3Q9Y5Q9 886 aa15.92■□□□□ 0.14
CHRNA1-202ENST00000348749 MROH2BQ7Z745 1585 aa15.83■□□□□ 0.13
CHRNA1-202ENST00000348749 BAZ1AQ9NRL2 1556 aaPredicted RBP15.83■□□□□ 0.12
CHRNA1-202ENST00000348749 CECR2Q9BXF3 1484 aa15.8■□□□□ 0.12
CHRNA1-202ENST00000348749 EIF4G1Q04637 1599 aaKnown RBP15.78■□□□□ 0.12
CHRNA1-202ENST00000348749 DIEXFQ68CQ4 756 aaKnown RBP15.76■□□□□ 0.11
CHRNA1-202ENST00000348749 WIZO95785 1651 aa15.76■□□□□ 0.11
CHRNA1-202ENST00000348749 DNAJC5BQ9UF47 199 aa15.72■□□□□ 0.11
CHRNA1-202ENST00000348749 FAM9AQ8IZU1 332 aaPredicted RBP15.7■□□□□ 0.1
CHRNA1-202ENST00000348749 CCER1Q8TC90 406 aaPredicted RBP15.66■□□□□ 0.1
CHRNA1-202ENST00000348749 WRNQ14191 1432 aaPredicted RBP eCLIP15.65■□□□□ 0.1
CHRNA1-202ENST00000348749 TOP2AP11388 1531 aaKnown RBP15.65■□□□□ 0.1
CHRNA1-202ENST00000348749 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.64■□□□□ 0.09
CHRNA1-202ENST00000348749 TTBK1Q5TCY1 1321 aaPredicted RBP15.58■□□□□ 0.08
CHRNA1-202ENST00000348749 EEA1Q15075 1411 aa15.58■□□□□ 0.08
CHRNA1-202ENST00000348749 SMARCA4P51532 1647 aa15.56■□□□□ 0.08
CHRNA1-202ENST00000348749 SMARCA2P51531 1590 aa15.52■□□□□ 0.07
CHRNA1-202ENST00000348749 TNIKQ9UKE5 1360 aa15.5■□□□□ 0.07
CHRNA1-202ENST00000348749 ZNF316A6NFI3 1004 aaPredicted RBP15.49■□□□□ 0.07
CHRNA1-202ENST00000348749 CCDC88BA6NC98 1476 aa15.48■□□□□ 0.07
CHRNA1-202ENST00000348749 CEP162Q5TB80 1403 aa15.45■□□□□ 0.06
CHRNA1-202ENST00000348749 ABCC8Q09428 1581 aa15.42■□□□□ 0.06
CHRNA1-202ENST00000348749 UNC13AQ9UPW8 1703 aa15.4■□□□□ 0.06
CHRNA1-202ENST00000348749 EHMT2Q96KQ7 1210 aa15.4■□□□□ 0.06
CHRNA1-202ENST00000348749 CLSPNQ9HAW4 1339 aa15.39■□□□□ 0.05
CHRNA1-202ENST00000348749 GOLGA3Q08378 1498 aa15.36■□□□□ 0.05
CHRNA1-202ENST00000348749 PEG3Q9GZU2 1588 aa15.36■□□□□ 0.05
CHRNA1-202ENST00000348749 YTHDC1Q96MU7 727 aaKnown RBP15.35■□□□□ 0.05
CHRNA1-202ENST00000348749 CSRNP3Q8WYN3 585 aa15.34■□□□□ 0.05
CHRNA1-202ENST00000348749 SOGA1O94964 1423 aa15.32■□□□□ 0.04
CHRNA1-202ENST00000348749 MIER1Q8N108 512 aa15.32■□□□□ 0.04
CHRNA1-202ENST00000348749 KIF21BO75037 1637 aa15.31■□□□□ 0.04
CHRNA1-202ENST00000348749 CEP164Q9UPV0 1460 aa15.27■□□□□ 0.04
CHRNA1-202ENST00000348749 ANP32EQ9BTT0 268 aa15.27■□□□□ 0.03
CHRNA1-202ENST00000348749 BCL11AQ9H165 835 aa15.24■□□□□ 0.03
CHRNA1-202ENST00000348749 BAZ1BQ9UIG0 1483 aaKnown RBP15.23■□□□□ 0.03
CHRNA1-202ENST00000348749 RUSC2Q8N2Y8 1516 aa15.2■□□□□ 0.02
CHRNA1-202ENST00000348749 UBTFP17480 764 aaKnown RBP15.2■□□□□ 0.02
CHRNA1-202ENST00000348749 SUPT16HQ9Y5B9 1047 aaKnown RBP15.19■□□□□ 0.02
CHRNA1-202ENST00000348749 BICRAQ9NZM4 1560 aa15.18■□□□□ 0.02
CHRNA1-202ENST00000348749 TSHZ2Q9NRE2 1034 aa15.16■□□□□ 0.02
CHRNA1-202ENST00000348749 VPS8Q8N3P4 1428 aa15.15■□□□□ 0.02
CHRNA1-202ENST00000348749 SYNJ1O43426 1573 aa15.14■□□□□ 0.01
CHRNA1-202ENST00000348749 CLIP1P30622 1438 aa15.13■□□□□ 0.01
CHRNA1-202ENST00000348749 ATAD2BQ9ULI0 1458 aa15.06■□□□□ 0
CHRNA1-202ENST00000348749 PABPN1Q86U42 306 aaKnown RBP eCLIP15.06■□□□□ 0
CHRNA1-202ENST00000348749 TOP2BQ02880 1626 aa15.05■□□□□ -0
CHRNA1-202ENST00000348749 ERICH3Q5RHP9 1530 aa15.04■□□□□ -0
CHRNA1-202ENST00000348749 BIVM-ERCC5R4GMW8 1640 aa15.02■□□□□ -0
CHRNA1-202ENST00000348749 APLP2Q06481 763 aa15□□□□□ -0.01
CHRNA1-202ENST00000348749 RAPGEF2Q9Y4G8 1499 aa14.98□□□□□ -0.01
CHRNA1-202ENST00000348749 PRXQ9BXM0 1461 aa14.93□□□□□ -0.02
CHRNA1-202ENST00000348749 HNRNPUL2Q1KMD3 747 aaKnown RBP14.92□□□□□ -0.02
CHRNA1-202ENST00000348749 DNAJC5Q9H3Z4 198 aa14.89□□□□□ -0.03
CHRNA1-202ENST00000348749 CUX2O14529 1486 aa14.88□□□□□ -0.03
CHRNA1-202ENST00000348749 HMGXB3Q12766 1538 aa14.87□□□□□ -0.03
CHRNA1-202ENST00000348749 ARAP1Q96P48 1450 aa14.86□□□□□ -0.03
CHRNA1-202ENST00000348749 RRBP1Q9P2E9 1410 aaKnown RBP14.86□□□□□ -0.03
CHRNA1-202ENST00000348749 DHX57Q6P158 1386 aaKnown RBP14.85□□□□□ -0.03
CHRNA1-202ENST00000348749 NCAPD3P42695 1498 aa14.8□□□□□ -0.04
CHRNA1-202ENST00000348749 KIF27Q86VH2 1401 aa14.8□□□□□ -0.04
CHRNA1-202ENST00000348749 MAP3K1Q13233 1512 aa14.78□□□□□ -0.04
CHRNA1-202ENST00000348749 RBM19Q9Y4C8 960 aaKnown RBP14.78□□□□□ -0.04
CHRNA1-202ENST00000348749 CUX1P39880 1505 aa14.76□□□□□ -0.05
CHRNA1-202ENST00000348749 PRDM2Q13029 1718 aa14.74□□□□□ -0.05
CHRNA1-202ENST00000348749 CFTRP13569 1480 aa14.72□□□□□ -0.05
CHRNA1-202ENST00000348749 CCNB3Q8WWL7 1395 aa14.71□□□□□ -0.05
CHRNA1-202ENST00000348749 FKBP8Q14318 412 aa14.71□□□□□ -0.05
CHRNA1-202ENST00000348749 CC2D2AQ9P2K1 1620 aa14.71□□□□□ -0.05
CHRNA1-202ENST00000348749 ARHGAP35Q9NRY4 1499 aa14.69□□□□□ -0.06
CHRNA1-202ENST00000348749 BCANQ96GW7 911 aa14.69□□□□□ -0.06
CHRNA1-202ENST00000348749 KANK4Q5T7N3 995 aaPredicted RBP14.67□□□□□ -0.06
CHRNA1-202ENST00000348749 FANCIQ9NVI1 1328 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms