RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 NISCHQ9Y2I1 1504 aa22.11■■□□□ 1.13
SYNE1-202ENST00000347037 CCDC180Q9P1Z9 1646 aa19.35■□□□□ 0.69
SYNE1-202ENST00000347037 SHROOM4Q9ULL8 1493 aa19.13■□□□□ 0.65
SYNE1-202ENST00000347037 SUPT5HO00267 1087 aaKnown RBP18.95■□□□□ 0.62
SYNE1-202ENST00000347037 ZCCHC6Q5VYS8 1495 aaKnown RBP18.65■□□□□ 0.58
SYNE1-202ENST00000347037 HRCP23327 699 aa18.49■□□□□ 0.55
SYNE1-202ENST00000347037 MYO15BQ96JP2 1530 aa18.41■□□□□ 0.54
SYNE1-202ENST00000347037 CHIC1Q5VXU3 224 aa18.4■□□□□ 0.54
SYNE1-202ENST00000347037 PCGF6Q9BYE7 350 aa18.38■□□□□ 0.53
SYNE1-202ENST00000347037 DCAF1Q9Y4B6 1507 aa18.36■□□□□ 0.53
SYNE1-202ENST00000347037 DCAF8L2P0C7V8 631 aa18.36■□□□□ 0.53
SYNE1-202ENST00000347037 PPARGC1BQ86YN6 1023 aaKnown RBP18.21■□□□□ 0.51
SYNE1-202ENST00000347037 LOC105371045A0A1W2PR82 267 aa18.02■□□□□ 0.48
SYNE1-202ENST00000347037 ABCC9O60706 1549 aa17.91■□□□□ 0.46
SYNE1-202ENST00000347037 NACADO15069 1562 aa17.86■□□□□ 0.45
SYNE1-202ENST00000347037 TRIM26Q12899 539 aaPredicted RBP17.8■□□□□ 0.44
SYNE1-202ENST00000347037 SCRIBQ14160 1630 aa17.65■□□□□ 0.42
SYNE1-202ENST00000347037 UNC13AQ9UPW8 1703 aa17.64■□□□□ 0.41
SYNE1-202ENST00000347037 RB1CC1Q8TDY2 1594 aa17.63■□□□□ 0.41
SYNE1-202ENST00000347037 FAM9AQ8IZU1 332 aaPredicted RBP17.56■□□□□ 0.4
SYNE1-202ENST00000347037 EHMT2Q96KQ7 1210 aa17.55■□□□□ 0.4
SYNE1-202ENST00000347037 ZEB1P37275 1124 aaPredicted RBP17.53■□□□□ 0.4
SYNE1-202ENST00000347037 TRIM41Q8WV44 630 aa17.52■□□□□ 0.4
SYNE1-202ENST00000347037 RSF1Q96T23 1441 aaPredicted RBP17.35■□□□□ 0.37
SYNE1-202ENST00000347037 BICRAQ9NZM4 1560 aa17.33■□□□□ 0.37
SYNE1-202ENST00000347037 SCAF1Q9H7N4 1312 aaKnown RBP17.33■□□□□ 0.36
SYNE1-202ENST00000347037 PELP1Q8IZL8 1130 aaKnown RBP17.31■□□□□ 0.36
SYNE1-202ENST00000347037 CECR2Q9BXF3 1484 aa17.16■□□□□ 0.34
SYNE1-202ENST00000347037 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.15■□□□□ 0.34
SYNE1-202ENST00000347037 CCER1Q8TC90 406 aaPredicted RBP17.13■□□□□ 0.33
SYNE1-202ENST00000347037 MROH2BQ7Z745 1585 aa17.1■□□□□ 0.33
SYNE1-202ENST00000347037 TTBK1Q5TCY1 1321 aaPredicted RBP17.06■□□□□ 0.32
SYNE1-202ENST00000347037 SMARCA4P51532 1647 aa17.02■□□□□ 0.31
SYNE1-202ENST00000347037 WIZO95785 1651 aa17.01■□□□□ 0.31
SYNE1-202ENST00000347037 ACIN1Q9UKV3 1341 aaKnown RBP17.01■□□□□ 0.31
SYNE1-202ENST00000347037 BAZ1AQ9NRL2 1556 aaPredicted RBP17■□□□□ 0.31
SYNE1-202ENST00000347037 NEUROD1Q13562 356 aa17■□□□□ 0.31
SYNE1-202ENST00000347037 DIEXFQ68CQ4 756 aaKnown RBP16.94■□□□□ 0.3
SYNE1-202ENST00000347037 GTF3C3Q9Y5Q9 886 aa16.9■□□□□ 0.3
SYNE1-202ENST00000347037 PEG3Q9GZU2 1588 aa16.9■□□□□ 0.3
SYNE1-202ENST00000347037 CENPBP07199 599 aaPredicted RBP16.89■□□□□ 0.3
SYNE1-202ENST00000347037 PABPN1Q86U42 306 aaKnown RBP eCLIP16.81■□□□□ 0.28
SYNE1-202ENST00000347037 EIF4G1Q04637 1599 aaKnown RBP16.8■□□□□ 0.28
SYNE1-202ENST00000347037 TOP2AP11388 1531 aaKnown RBP16.78■□□□□ 0.28
SYNE1-202ENST00000347037 YTHDC1Q96MU7 727 aaKnown RBP16.74■□□□□ 0.27
SYNE1-202ENST00000347037 UBTFP17480 764 aaKnown RBP16.7■□□□□ 0.26
SYNE1-202ENST00000347037 CEP162Q5TB80 1403 aa16.7■□□□□ 0.26
SYNE1-202ENST00000347037 ABCC8Q09428 1581 aa16.7■□□□□ 0.26
SYNE1-202ENST00000347037 SMARCA2P51531 1590 aa16.68■□□□□ 0.26
SYNE1-202ENST00000347037 CCDC88BA6NC98 1476 aa16.68■□□□□ 0.26
SYNE1-202ENST00000347037 ZNF316A6NFI3 1004 aaPredicted RBP16.66■□□□□ 0.26
SYNE1-202ENST00000347037 WRNQ14191 1432 aaPredicted RBP eCLIP16.64■□□□□ 0.25
SYNE1-202ENST00000347037 ATAD2BQ9ULI0 1458 aa16.63■□□□□ 0.25
SYNE1-202ENST00000347037 SOGA1O94964 1423 aa16.63■□□□□ 0.25
SYNE1-202ENST00000347037 HNRNPUL2Q1KMD3 747 aaKnown RBP16.59■□□□□ 0.25
SYNE1-202ENST00000347037 TNIKQ9UKE5 1360 aa16.58■□□□□ 0.24
SYNE1-202ENST00000347037 CSRNP3Q8WYN3 585 aa16.58■□□□□ 0.24
SYNE1-202ENST00000347037 MIER1Q8N108 512 aa16.53■□□□□ 0.24
SYNE1-202ENST00000347037 RUSC2Q8N2Y8 1516 aa16.52■□□□□ 0.24
SYNE1-202ENST00000347037 HMGXB3Q12766 1538 aa16.52■□□□□ 0.24
SYNE1-202ENST00000347037 MYT1Q01538 1121 aa16.52■□□□□ 0.23
SYNE1-202ENST00000347037 NCAPD3P42695 1498 aa16.47■□□□□ 0.23
SYNE1-202ENST00000347037 RANGAP1P46060 587 aaPredicted RBP16.46■□□□□ 0.23
SYNE1-202ENST00000347037 BAZ1BQ9UIG0 1483 aaKnown RBP16.43■□□□□ 0.22
SYNE1-202ENST00000347037 GOLGA3Q08378 1498 aa16.43■□□□□ 0.22
SYNE1-202ENST00000347037 EEA1Q15075 1411 aa16.43■□□□□ 0.22
SYNE1-202ENST00000347037 APLP2Q06481 763 aa16.41■□□□□ 0.22
SYNE1-202ENST00000347037 CC2D2AQ9P2K1 1620 aa16.39■□□□□ 0.21
SYNE1-202ENST00000347037 CLIP1P30622 1438 aa16.32■□□□□ 0.2
SYNE1-202ENST00000347037 PRDM2Q13029 1718 aa16.3■□□□□ 0.2
SYNE1-202ENST00000347037 CEP164Q9UPV0 1460 aa16.28■□□□□ 0.2
SYNE1-202ENST00000347037 VPS8Q8N3P4 1428 aa16.24■□□□□ 0.19
SYNE1-202ENST00000347037 SYNJ1O43426 1573 aa16.18■□□□□ 0.18
SYNE1-202ENST00000347037 RAPGEF2Q9Y4G8 1499 aa16.17■□□□□ 0.18
SYNE1-202ENST00000347037 KIF21BO75037 1637 aa16.17■□□□□ 0.18
SYNE1-202ENST00000347037 CFTRP13569 1480 aa16.14■□□□□ 0.18
SYNE1-202ENST00000347037 BIVM-ERCC5R4GMW8 1640 aa16.13■□□□□ 0.17
SYNE1-202ENST00000347037 SUPT16HQ9Y5B9 1047 aaKnown RBP16.12■□□□□ 0.17
SYNE1-202ENST00000347037 DHX57Q6P158 1386 aaKnown RBP16.09■□□□□ 0.17
SYNE1-202ENST00000347037 ITGAEP38570 1179 aa16.08■□□□□ 0.16
SYNE1-202ENST00000347037 TOP2BQ02880 1626 aa16.07■□□□□ 0.16
SYNE1-202ENST00000347037 KANK4Q5T7N3 995 aaPredicted RBP16.06■□□□□ 0.16
SYNE1-202ENST00000347037 CLSPNQ9HAW4 1339 aa16.05■□□□□ 0.16
SYNE1-202ENST00000347037 CUX1P39880 1505 aa15.99■□□□□ 0.15
SYNE1-202ENST00000347037 BCANQ96GW7 911 aa15.97■□□□□ 0.15
SYNE1-202ENST00000347037 KCNH8Q96L42 1107 aa15.96■□□□□ 0.15
SYNE1-202ENST00000347037 TSHZ2Q9NRE2 1034 aa15.95■□□□□ 0.14
SYNE1-202ENST00000347037 CADPSQ9ULU8 1353 aa15.95■□□□□ 0.14
SYNE1-202ENST00000347037 ARAP1Q96P48 1450 aa15.94■□□□□ 0.14
SYNE1-202ENST00000347037 DNAJC5BQ9UF47 199 aa15.92■□□□□ 0.14
SYNE1-202ENST00000347037 LAMC3Q9Y6N6 1575 aa15.91■□□□□ 0.14
SYNE1-202ENST00000347037 CCNB3Q8WWL7 1395 aa15.88■□□□□ 0.13
SYNE1-202ENST00000347037 NESP48681 1621 aa15.88■□□□□ 0.13
SYNE1-202ENST00000347037 RRBP1Q9P2E9 1410 aaKnown RBP15.86■□□□□ 0.13
SYNE1-202ENST00000347037 PRXQ9BXM0 1461 aa15.86■□□□□ 0.13
SYNE1-202ENST00000347037 DDX10Q13206 875 aaKnown RBP15.85■□□□□ 0.13
SYNE1-202ENST00000347037 FKBP8Q14318 412 aa15.84■□□□□ 0.13
SYNE1-202ENST00000347037 ERICH3Q5RHP9 1530 aa15.84■□□□□ 0.13
SYNE1-202ENST00000347037 KIF21AQ7Z4S6 1674 aa15.83■□□□□ 0.12
SYNE1-202ENST00000347037 ANP32EQ9BTT0 268 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms